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The map label for this gene is yedQ [H]

Identifier: 119776735

GI number: 119776735

Start: 4238369

End: 4240294

Strand: Direct

Name: yedQ [H]

Synonym: Sama_3603

Alternate gene names: 119776735

Gene position: 4238369-4240294 (Clockwise)

Preceding gene: 119776734

Following gene: 119776738

Centisome position: 98.43

GC content: 44.34

Gene sequence:

>1926_bases
ATGCTGCGTTTTATTCGGCTCGTCATTGCAGGGATGATGTCACTGCTGGTAACACAAGCGACCCTGGCACAAGAGCGATA
CGGCATGGCAGAGCTTCAGGAAGAGCTGGCACAATTGGACAAATCACTCTCACAAGATAATCTGGACAGCGTTATCGCTA
AGATAGACCTAAGCATTAACAAAGCAAAATACGAGCCTGTAAGAAAAGCCGCATTATTAACTTTTAAAGCAGAAAAACTG
CGGTTCCATGGAATATTTTATATTAATGAAAGCTTATCTAAAGCATTTGATTTGATTAGTTATGATAAACAACCAGAGCT
ATACATCTATGCTATGACAGTTAAAAGCTATGAAATATATGCCTATCAAAACAACCCTGAACTGGCAGTAAAATTACTTG
AAGATTTACAAAAAAAACCTGAACTAGAAAACATACCGTATATACATGTTATTTTTTTAAAACACTTACTTGAAACATAT
TATAAACTTCAACTTTTTGAAAAAATCCCACAACCTCTCTTTCGTCTCTCACAAATTTCAAAGGAATTTGAATTAAGTAC
AAACAGCAAAGACCTATTATTTTATCTTGAAGAAGAGCTAGCATACCACAGCAGTTTGATTGGTGACACGGAACAGGCCA
TTGAGCAATACGGCAGACTCGCACAGCACTATGAGCAGAAAAATCACTCGGAACACATCGCAATTATTTACTGCAACATT
GCCAATATGTATTTTCTGCCATTCGAGGAAAAGGTTCGTTATGCACAGGCTTCACTGTCTGCTCACAATAATATCGCCTG
TTCAGATGTGATGGAGAAAATTGTTTGGCTCGCCGAAATTCAGCAAGGCGACTTTTCCAATGTAAATCGATTAATGCACT
TCAATCCCGTGCAGCAAATACCGCACCTGAATGATAGCTCTGCATATTATGCGGGGCTATCGTACCTATTGCTGGGGAAT
CTGTCAGCGGCGCAAGCAATGGCTGACAGAATTACAGCAGAAGATAATTGGGAGCGTCAGGATCTACTGCAACAAATTTA
CCAGAAACAAGGTCATTATCAGGCAGCACTTGAAGCCTCTCAGCGTTATCATCAGTTAAGAACCGCAAAAGACGCAGAGG
CGCGGTCATTAATGTTAAGCAGTTTTCAAACCCGCTTGGCGTTGGCTCAAGAAGAAACACAGGCCGCAGAGCAAGAAAAA
CAAGCAGCCCGTATTGCAGCGGCAGAACAAAAAGCAAAATCAAGACTGCATATTACACTGATAGTGATTAGTGCAGGCGT
CATGATCACCCTGATATTGTCGCTGTACCTACTTCGCAGCCGCCAACACAGGATAAAACTGCAACAACTCTCGGATACGG
ATCCCTTAACGGGATTGCTTAACCGACGTGCTTTTTTGCATCAGGCCCGTCAGATGCAGCGTCTTGCCGAACGTCAGCAG
TTCCCATTATCCGTTGCTCTGTTGGATCTGGATTTTTTTAAAGCCATCAATGATAAACATGGGCATCACGTCGGTGACGC
CGTCTTGCGGGCATTTGCTCATGGGGCGAAAACGACGTTGAGGCAAACAGACATTATCGGTCGCTTTGGTGGTGAGGAGT
TTATTCTGCTGGCGACGGAGAAAGACCCCATCATATTTGCAGGCCTGCTACAGCGTGTGCAGCGCGCATTTACTCATGCG
TGTCAGCAGGATCCCGCCATTGGCTTTAGCGTTAGCTTCTCAGCCGGTATTGCTGCTCTTGAGGATAACGGCGCAACTGA
AATCCCTGACATTGAAGAGGCGATTCGTCAGGCTGATGAACTGCTTTACCGGGCAAAAGCCAACGGTCGCCAGCAGGTTT
GTACAGACAGCTTATGTCAGCGGCTTATGGACACAGATTGCGACCTTGTTGCACCAGGCCATCCCGTAACCCTTAGCGCA
GAGTAA

Upstream 100 bases:

>100_bases
ACATTGTATAAAACTTGCTATTGGAGTGACTTTGTTGATCTTCAGTGCTTTGCTCTATTCGCGTTTTAAGTCTGCTATCC
ACATGGATAGTGATAAGTTC

Downstream 100 bases:

>100_bases
ACGCTGTATTATTGAAGGCCGCTAACCGCCTCCAGGTACAAGCACGTCTTACATATCGCAATTCTTCAGCGGTTGACGCA
GCTGTGCCCGTACGTTATCC

Product: GGDEF domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 641; Mature: 641

Protein sequence:

>641_residues
MLRFIRLVIAGMMSLLVTQATLAQERYGMAELQEELAQLDKSLSQDNLDSVIAKIDLSINKAKYEPVRKAALLTFKAEKL
RFHGIFYINESLSKAFDLISYDKQPELYIYAMTVKSYEIYAYQNNPELAVKLLEDLQKKPELENIPYIHVIFLKHLLETY
YKLQLFEKIPQPLFRLSQISKEFELSTNSKDLLFYLEEELAYHSSLIGDTEQAIEQYGRLAQHYEQKNHSEHIAIIYCNI
ANMYFLPFEEKVRYAQASLSAHNNIACSDVMEKIVWLAEIQQGDFSNVNRLMHFNPVQQIPHLNDSSAYYAGLSYLLLGN
LSAAQAMADRITAEDNWERQDLLQQIYQKQGHYQAALEASQRYHQLRTAKDAEARSLMLSSFQTRLALAQEETQAAEQEK
QAARIAAAEQKAKSRLHITLIVISAGVMITLILSLYLLRSRQHRIKLQQLSDTDPLTGLLNRRAFLHQARQMQRLAERQQ
FPLSVALLDLDFFKAINDKHGHHVGDAVLRAFAHGAKTTLRQTDIIGRFGGEEFILLATEKDPIIFAGLLQRVQRAFTHA
CQQDPAIGFSVSFSAGIAALEDNGATEIPDIEEAIRQADELLYRAKANGRQQVCTDSLCQRLMDTDCDLVAPGHPVTLSA
E

Sequences:

>Translated_641_residues
MLRFIRLVIAGMMSLLVTQATLAQERYGMAELQEELAQLDKSLSQDNLDSVIAKIDLSINKAKYEPVRKAALLTFKAEKL
RFHGIFYINESLSKAFDLISYDKQPELYIYAMTVKSYEIYAYQNNPELAVKLLEDLQKKPELENIPYIHVIFLKHLLETY
YKLQLFEKIPQPLFRLSQISKEFELSTNSKDLLFYLEEELAYHSSLIGDTEQAIEQYGRLAQHYEQKNHSEHIAIIYCNI
ANMYFLPFEEKVRYAQASLSAHNNIACSDVMEKIVWLAEIQQGDFSNVNRLMHFNPVQQIPHLNDSSAYYAGLSYLLLGN
LSAAQAMADRITAEDNWERQDLLQQIYQKQGHYQAALEASQRYHQLRTAKDAEARSLMLSSFQTRLALAQEETQAAEQEK
QAARIAAAEQKAKSRLHITLIVISAGVMITLILSLYLLRSRQHRIKLQQLSDTDPLTGLLNRRAFLHQARQMQRLAERQQ
FPLSVALLDLDFFKAINDKHGHHVGDAVLRAFAHGAKTTLRQTDIIGRFGGEEFILLATEKDPIIFAGLLQRVQRAFTHA
CQQDPAIGFSVSFSAGIAALEDNGATEIPDIEEAIRQADELLYRAKANGRQQVCTDSLCQRLMDTDCDLVAPGHPVTLSA
E
>Mature_641_residues
MLRFIRLVIAGMMSLLVTQATLAQERYGMAELQEELAQLDKSLSQDNLDSVIAKIDLSINKAKYEPVRKAALLTFKAEKL
RFHGIFYINESLSKAFDLISYDKQPELYIYAMTVKSYEIYAYQNNPELAVKLLEDLQKKPELENIPYIHVIFLKHLLETY
YKLQLFEKIPQPLFRLSQISKEFELSTNSKDLLFYLEEELAYHSSLIGDTEQAIEQYGRLAQHYEQKNHSEHIAIIYCNI
ANMYFLPFEEKVRYAQASLSAHNNIACSDVMEKIVWLAEIQQGDFSNVNRLMHFNPVQQIPHLNDSSAYYAGLSYLLLGN
LSAAQAMADRITAEDNWERQDLLQQIYQKQGHYQAALEASQRYHQLRTAKDAEARSLMLSSFQTRLALAQEETQAAEQEK
QAARIAAAEQKAKSRLHITLIVISAGVMITLILSLYLLRSRQHRIKLQQLSDTDPLTGLLNRRAFLHQARQMQRLAERQQ
FPLSVALLDLDFFKAINDKHGHHVGDAVLRAFAHGAKTTLRQTDIIGRFGGEEFILLATEKDPIIFAGLLQRVQRAFTHA
CQQDPAIGFSVSFSAGIAALEDNGATEIPDIEEAIRQADELLYRAKANGRQQVCTDSLCQRLMDTDCDLVAPGHPVTLSA
E

Specific function: Involves in the regulation of cellulose production [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI87082007, Length=202, Percent_Identity=34.6534653465347, Blast_Score=98, Evalue=2e-21,
Organism=Escherichia coli, GI87081881, Length=170, Percent_Identity=38.8235294117647, Blast_Score=96, Evalue=6e-21,
Organism=Escherichia coli, GI145693134, Length=186, Percent_Identity=36.0215053763441, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1787262, Length=168, Percent_Identity=32.7380952380952, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI1786584, Length=174, Percent_Identity=33.9080459770115, Blast_Score=89, Evalue=1e-18,
Organism=Escherichia coli, GI87081974, Length=157, Percent_Identity=31.2101910828025, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1787802, Length=213, Percent_Identity=30.0469483568075, Blast_Score=80, Evalue=5e-16,
Organism=Escherichia coli, GI1787541, Length=211, Percent_Identity=30.3317535545024, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI87081977, Length=156, Percent_Identity=30.7692307692308, Blast_Score=75, Evalue=9e-15,
Organism=Escherichia coli, GI1788381, Length=179, Percent_Identity=32.9608938547486, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1787816, Length=174, Percent_Identity=33.3333333333333, Blast_Score=73, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160 [H]

Pfam domain/function: PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 72959; Mature: 72959

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRFIRLVIAGMMSLLVTQATLAQERYGMAELQEELAQLDKSLSQDNLDSVIAKIDLSIN
CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCEEC
KAKYEPVRKAALLTFKAEKLRFHGIFYINESLSKAFDLISYDKQPELYIYAMTVKSYEIY
HHHHHHHHHHHHHEEEHHHEEEEEEEEEEHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEE
AYQNNPELAVKLLEDLQKKPELENIPYIHVIFLKHLLETYYKLQLFEKIPQPLFRLSQIS
EEECCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
KEFELSTNSKDLLFYLEEELAYHSSLIGDTEQAIEQYGRLAQHYEQKNHSEHIAIIYCNI
HHHCCCCCCCCEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEE
ANMYFLPFEEKVRYAQASLSAHNNIACSDVMEKIVWLAEIQQGDFSNVNRLMHFNPVQQI
CCEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHC
PHLNDSSAYYAGLSYLLLGNLSAAQAMADRITAEDNWERQDLLQQIYQKQGHYQAALEAS
CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHH
QRYHQLRTAKDAEARSLMLSSFQTRLALAQEETQAAEQEKQAARIAAAEQKAKSRLHITL
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE
IVISAGVMITLILSLYLLRSRQHRIKLQQLSDTDPLTGLLNRRAFLHQARQMQRLAERQQ
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
FPLSVALLDLDFFKAINDKHGHHVGDAVLRAFAHGAKTTLRQTDIIGRFGGEEFILLATE
CCCEEEEEHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEC
KDPIIFAGLLQRVQRAFTHACQQDPAIGFSVSFSAGIAALEDNGATEIPDIEEAIRQADE
CCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHH
LLYRAKANGRQQVCTDSLCQRLMDTDCDLVAPGHPVTLSAE
HHHHHHCCCHHHHHHHHHHHHHHCCCCCEECCCCCEEEECC
>Mature Secondary Structure
MLRFIRLVIAGMMSLLVTQATLAQERYGMAELQEELAQLDKSLSQDNLDSVIAKIDLSIN
CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCEEC
KAKYEPVRKAALLTFKAEKLRFHGIFYINESLSKAFDLISYDKQPELYIYAMTVKSYEIY
HHHHHHHHHHHHHEEEHHHEEEEEEEEEEHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEE
AYQNNPELAVKLLEDLQKKPELENIPYIHVIFLKHLLETYYKLQLFEKIPQPLFRLSQIS
EEECCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
KEFELSTNSKDLLFYLEEELAYHSSLIGDTEQAIEQYGRLAQHYEQKNHSEHIAIIYCNI
HHHCCCCCCCCEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEE
ANMYFLPFEEKVRYAQASLSAHNNIACSDVMEKIVWLAEIQQGDFSNVNRLMHFNPVQQI
CCEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHC
PHLNDSSAYYAGLSYLLLGNLSAAQAMADRITAEDNWERQDLLQQIYQKQGHYQAALEAS
CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHH
QRYHQLRTAKDAEARSLMLSSFQTRLALAQEETQAAEQEKQAARIAAAEQKAKSRLHITL
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE
IVISAGVMITLILSLYLLRSRQHRIKLQQLSDTDPLTGLLNRRAFLHQARQMQRLAERQQ
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
FPLSVALLDLDFFKAINDKHGHHVGDAVLRAFAHGAKTTLRQTDIIGRFGGEEFILLATE
CCCEEEEEHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEC
KDPIIFAGLLQRVQRAFTHACQQDPAIGFSVSFSAGIAALEDNGATEIPDIEEAIRQADE
CCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHH
LLYRAKANGRQQVCTDSLCQRLMDTDCDLVAPGHPVTLSAE
HHHHHHCCCHHHHHHHHHHHHHHCCCCCEECCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA