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The map label for this gene is yddU [C]

Identifier: 119776732

GI number: 119776732

Start: 4233484

End: 4234992

Strand: Reverse

Name: yddU [C]

Synonym: Sama_3600

Alternate gene names: 119776732

Gene position: 4234992-4233484 (Counterclockwise)

Preceding gene: 119776733

Following gene: 119776730

Centisome position: 98.35

GC content: 50.76

Gene sequence:

>1509_bases
ATGCACAGAGCTGTCACTTCGGCCTTCCGGGTATCTATCATTTATGCGGTTTTTGCCGGGTTTTGGATCCTGTTTTCAGA
TATCGCCGTCGAAATACTGCTCGACAGTCCACAGCTTCGCGCTATAGCACAAACGTACAAGGGATTGGCCTTTGTCATCA
TCACGGCAACCCTGCTGCTGATGTTGGTGCTCAGGAGTAACAGGGCGCTGGAAAAAGCCAATGAAATGGACAGCCTCACC
GGCCTTTGCAGTCTCAGCGTGTTTATTCGTTCCTTGAATAACACCATCCGCAAGCTTAAAACCAATGAACGCCTTATTCT
GGGTTATCTGGACATCGACGATTTCAAGCAAATCAACGACAACTTTGGCTATGAGCGTGCCGATGCTTTCTTGCGTGATT
TGGCCAACGACATCACTGATGCCGCCCTGCCAGGCTCTGTGGTTTCACGCTTACACGCAGATCAATTTGCCAGTTTTGTT
CGCTTGGATACTTCGGTGGATATGGAAGCCCATGTACGGGGATTTCAACGTTTATTCGCCCACCGGGCCAGGCAACATGG
GATTGATGCCACTTGTTGTATCGGTGTCGCCCTGTTTCCAGCCGATGGCACCAATGCCAAAGATATGATGGTATCGGCCA
CCGAAGCGCTGAATATGGCCAAAAAGAAGAAAAATGCCATCCAGTACCACGATAAGGCGCTCAGCGAAAAAGCCTTGCAA
CGCCGCCAGTTGGTTATGGATTTACGCCAAGCCATCAGTGACGAAGTCCTGTCGCTGGTATATCAGCCCAAATATGATCT
GAGTACGCTCACTGCCTGTGGCGTTGAAGTGCTGGTGCGCTGGCATCACCCGGTGAAGGGGTATATTGCTCCCGATGTGT
TTATTCCGCTTGCAGAGGAAATCGGCCTGACAGCCGCCATCTCCAAGCTGGTGGTCGACAAAGCGGCTGCGGAGCTTGGC
AGTGCAGGTTTGCTGGACGGCAGTCTGGCGCATGTGGCCGTAAATGTGTCGGCGGACGAATTCAATAACGCCGACGAAAT
GTATGCATTGACCCAATTTATCAAGAGTAAAAAGGCCCTGGCACCCTTTGTGCGGATTGAAATTACTGAAACCGCCACCC
TCACAGATATGCATAAGAGTGTGGAGATTATTTCCAACCTGCAGGCCAGTGGTATCACCTTTTCCATCGATGATTTCGGT
ACCGGTTACACCTCTTTGGCGATGCTAAAAGACCTGACTGTTGATGAGATTAAAATCGACCGCAGTTTTGTTTCAGGGGT
GGAGCAGGACGAGCGATCACGCACCATTGTCAGCGCTATTGTTGCCATGGCCCAGAGTTTTGATATTCATATCGTGGCGG
AAGGGGTCGAAAATGCCGCGCAGCTGAAAATTTTGCAGGATATGGGATGTCAGCAGGCTCAGGGTTATTATCTGGGACGC
CCCATGGCATTGCATGATTTGGTGAAGCATCTGAATCAAGACGCCACCGAGTTCAGCGCAGCTCACTGA

Upstream 100 bases:

>100_bases
GAAAATAAGAATCTTGTCAGCATAACCATTTTTATTGTGCGATTTTTATTGGTGGCTGTGATACGTTGAGCAAACGACTA
AGTTACAGGTTCAGTCAATC

Downstream 100 bases:

>100_bases
GGGGCGAGGCTAAGATACTGGCCAGCGCCCAGGGTAAAAAGCCACAGCCCCCAGAGGCTGTGTTCCAGCACGCAGGCTGC
GGTGGAGCGGGAGCTGGCAT

Product: putative diguanylate phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 502; Mature: 502

Protein sequence:

>502_residues
MHRAVTSAFRVSIIYAVFAGFWILFSDIAVEILLDSPQLRAIAQTYKGLAFVIITATLLLMLVLRSNRALEKANEMDSLT
GLCSLSVFIRSLNNTIRKLKTNERLILGYLDIDDFKQINDNFGYERADAFLRDLANDITDAALPGSVVSRLHADQFASFV
RLDTSVDMEAHVRGFQRLFAHRARQHGIDATCCIGVALFPADGTNAKDMMVSATEALNMAKKKKNAIQYHDKALSEKALQ
RRQLVMDLRQAISDEVLSLVYQPKYDLSTLTACGVEVLVRWHHPVKGYIAPDVFIPLAEEIGLTAAISKLVVDKAAAELG
SAGLLDGSLAHVAVNVSADEFNNADEMYALTQFIKSKKALAPFVRIEITETATLTDMHKSVEIISNLQASGITFSIDDFG
TGYTSLAMLKDLTVDEIKIDRSFVSGVEQDERSRTIVSAIVAMAQSFDIHIVAEGVENAAQLKILQDMGCQQAQGYYLGR
PMALHDLVKHLNQDATEFSAAH

Sequences:

>Translated_502_residues
MHRAVTSAFRVSIIYAVFAGFWILFSDIAVEILLDSPQLRAIAQTYKGLAFVIITATLLLMLVLRSNRALEKANEMDSLT
GLCSLSVFIRSLNNTIRKLKTNERLILGYLDIDDFKQINDNFGYERADAFLRDLANDITDAALPGSVVSRLHADQFASFV
RLDTSVDMEAHVRGFQRLFAHRARQHGIDATCCIGVALFPADGTNAKDMMVSATEALNMAKKKKNAIQYHDKALSEKALQ
RRQLVMDLRQAISDEVLSLVYQPKYDLSTLTACGVEVLVRWHHPVKGYIAPDVFIPLAEEIGLTAAISKLVVDKAAAELG
SAGLLDGSLAHVAVNVSADEFNNADEMYALTQFIKSKKALAPFVRIEITETATLTDMHKSVEIISNLQASGITFSIDDFG
TGYTSLAMLKDLTVDEIKIDRSFVSGVEQDERSRTIVSAIVAMAQSFDIHIVAEGVENAAQLKILQDMGCQQAQGYYLGR
PMALHDLVKHLNQDATEFSAAH
>Mature_502_residues
MHRAVTSAFRVSIIYAVFAGFWILFSDIAVEILLDSPQLRAIAQTYKGLAFVIITATLLLMLVLRSNRALEKANEMDSLT
GLCSLSVFIRSLNNTIRKLKTNERLILGYLDIDDFKQINDNFGYERADAFLRDLANDITDAALPGSVVSRLHADQFASFV
RLDTSVDMEAHVRGFQRLFAHRARQHGIDATCCIGVALFPADGTNAKDMMVSATEALNMAKKKKNAIQYHDKALSEKALQ
RRQLVMDLRQAISDEVLSLVYQPKYDLSTLTACGVEVLVRWHHPVKGYIAPDVFIPLAEEIGLTAAISKLVVDKAAAELG
SAGLLDGSLAHVAVNVSADEFNNADEMYALTQFIKSKKALAPFVRIEITETATLTDMHKSVEIISNLQASGITFSIDDFG
TGYTSLAMLKDLTVDEIKIDRSFVSGVEQDERSRTIVSAIVAMAQSFDIHIVAEGVENAAQLKILQDMGCQQAQGYYLGR
PMALHDLVKHLNQDATEFSAAH

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=430, Percent_Identity=28.6046511627907, Blast_Score=184, Evalue=2e-47,
Organism=Escherichia coli, GI1787541, Length=410, Percent_Identity=29.0243902439024, Blast_Score=173, Evalue=2e-44,
Organism=Escherichia coli, GI87081845, Length=244, Percent_Identity=36.0655737704918, Blast_Score=142, Evalue=5e-35,
Organism=Escherichia coli, GI87081980, Length=233, Percent_Identity=34.7639484978541, Blast_Score=141, Evalue=1e-34,
Organism=Escherichia coli, GI1788502, Length=254, Percent_Identity=32.2834645669291, Blast_Score=139, Evalue=6e-34,
Organism=Escherichia coli, GI226510982, Length=297, Percent_Identity=29.2929292929293, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1790496, Length=246, Percent_Identity=32.520325203252, Blast_Score=134, Evalue=2e-32,
Organism=Escherichia coli, GI1787055, Length=429, Percent_Identity=27.7389277389277, Blast_Score=127, Evalue=2e-30,
Organism=Escherichia coli, GI1786507, Length=270, Percent_Identity=33.3333333333333, Blast_Score=125, Evalue=7e-30,
Organism=Escherichia coli, GI87081743, Length=246, Percent_Identity=29.6747967479675, Blast_Score=125, Evalue=8e-30,
Organism=Escherichia coli, GI1788849, Length=411, Percent_Identity=25.0608272506083, Blast_Score=115, Evalue=1e-26,
Organism=Escherichia coli, GI87082096, Length=200, Percent_Identity=31, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1787410, Length=134, Percent_Identity=28.3582089552239, Blast_Score=69, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 55293; Mature: 55293

Theoretical pI: Translated: 5.89; Mature: 5.89

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHRAVTSAFRVSIIYAVFAGFWILFSDIAVEILLDSPQLRAIAQTYKGLAFVIITATLLL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHH
MLVLRSNRALEKANEMDSLTGLCSLSVFIRSLNNTIRKLKTNERLILGYLDIDDFKQIND
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHH
NFGYERADAFLRDLANDITDAALPGSVVSRLHADQFASFVRLDTSVDMEAHVRGFQRLFA
CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
HRARQHGIDATCCIGVALFPADGTNAKDMMVSATEALNMAKKKKNAIQYHDKALSEKALQ
HHHHHCCCCHHHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRQLVMDLRQAISDEVLSLVYQPKYDLSTLTACGVEVLVRWHHPVKGYIAPDVFIPLAEE
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
IGLTAAISKLVVDKAAAELGSAGLLDGSLAHVAVNVSADEFNNADEMYALTQFIKSKKAL
HHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECHHHCCCHHHHHHHHHHHHHHHHH
APFVRIEITETATLTDMHKSVEIISNLQASGITFSIDDFGTGYTSLAMLKDLTVDEIKID
CCEEEEEEECCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHCCHHHHHHH
RSFVSGVEQDERSRTIVSAIVAMAQSFDIHIVAEGVENAAQLKILQDMGCQQAQGYYLGR
HHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCHHCCCEECCC
PMALHDLVKHLNQDATEFSAAH
CHHHHHHHHHHCCCHHHHCCCC
>Mature Secondary Structure
MHRAVTSAFRVSIIYAVFAGFWILFSDIAVEILLDSPQLRAIAQTYKGLAFVIITATLLL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHH
MLVLRSNRALEKANEMDSLTGLCSLSVFIRSLNNTIRKLKTNERLILGYLDIDDFKQIND
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHH
NFGYERADAFLRDLANDITDAALPGSVVSRLHADQFASFVRLDTSVDMEAHVRGFQRLFA
CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
HRARQHGIDATCCIGVALFPADGTNAKDMMVSATEALNMAKKKKNAIQYHDKALSEKALQ
HHHHHCCCCHHHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRQLVMDLRQAISDEVLSLVYQPKYDLSTLTACGVEVLVRWHHPVKGYIAPDVFIPLAEE
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
IGLTAAISKLVVDKAAAELGSAGLLDGSLAHVAVNVSADEFNNADEMYALTQFIKSKKAL
HHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECHHHCCCHHHHHHHHHHHHHHHHH
APFVRIEITETATLTDMHKSVEIISNLQASGITFSIDDFGTGYTSLAMLKDLTVDEIKID
CCEEEEEEECCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHCCHHHHHHH
RSFVSGVEQDERSRTIVSAIVAMAQSFDIHIVAEGVENAAQLKILQDMGCQQAQGYYLGR
HHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCHHCCCEECCC
PMALHDLVKHLNQDATEFSAAH
CHHHHHHHHHHCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]