| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is 119776714
Identifier: 119776714
GI number: 119776714
Start: 4217119
End: 4217526
Strand: Reverse
Name: 119776714
Synonym: Sama_3582
Alternate gene names: NA
Gene position: 4217526-4217119 (Counterclockwise)
Preceding gene: 119776716
Following gene: 119776706
Centisome position: 97.94
GC content: 52.7
Gene sequence:
>408_bases ATGAGTTTGTTCTTCTTGCTGCAGGCCTGTTCAACCACTCATCTCAGCCGTGATGAGTGGGAATTGAAGGTGAACGACTC CATCAGCCAGTGGCAACTGGAGAGTGTGAAAAAGGTGAATACCTTCAGGCTCGACAGCTGGGCCAGTCTGGGGGAAAAGC ATCTGATCCTGCGTACCAGTCCAAGCAAGCCGTACTTGGTTGAGCTGGATGCCAGGTGTCCGCAACTCCACTTTGCCAGA GCGCTGATGCTTGACCAGACTATGCCTACCAGTTTGGATGCGGGCTTTGATTCGGTGTTTACCGTCCAGGAGCCGCATAT AAAGTGCCGGATAAAGACTATCTATCCCCTAAACAGGGAACAGGATAAAGCCTTGCTGGCGCTGGATACGCAGGCCGCTG AAGACTAG
Upstream 100 bases:
>100_bases CGGTATCCCTCCGGTGTTGGCGCTACACTGAATGGCTGAAAAGCTTGGTATTCCAAAAAGGAGATGCCCGATGAAAAGTG CGCTTACATCCGCCACTGTG
Downstream 100 bases:
>100_bases ACCGCCAACCGCAGGCGGTTAGCAGGACAGTTGCTTGCAGCAATTCTTTCCTGCCGCTTTGGCCTGATAGAGCGCAGAAT CTGCCAAGGAACAGAGTGTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 135; Mature: 134
Protein sequence:
>135_residues MSLFFLLQACSTTHLSRDEWELKVNDSISQWQLESVKKVNTFRLDSWASLGEKHLILRTSPSKPYLVELDARCPQLHFAR ALMLDQTMPTSLDAGFDSVFTVQEPHIKCRIKTIYPLNREQDKALLALDTQAAED
Sequences:
>Translated_135_residues MSLFFLLQACSTTHLSRDEWELKVNDSISQWQLESVKKVNTFRLDSWASLGEKHLILRTSPSKPYLVELDARCPQLHFAR ALMLDQTMPTSLDAGFDSVFTVQEPHIKCRIKTIYPLNREQDKALLALDTQAAED >Mature_134_residues SLFFLLQACSTTHLSRDEWELKVNDSISQWQLESVKKVNTFRLDSWASLGEKHLILRTSPSKPYLVELDARCPQLHFARA LMLDQTMPTSLDAGFDSVFTVQEPHIKCRIKTIYPLNREQDKALLALDTQAAED
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15494; Mature: 15363
Theoretical pI: Translated: 6.10; Mature: 6.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLFFLLQACSTTHLSRDEWELKVNDSISQWQLESVKKVNTFRLDSWASLGEKHLILRTS CCCEEEEEHHCCCCCCCCCEEEEECCCCCHHHHHHHHHCCEEECCCHHCCCCEEEEEEEC PSKPYLVELDARCPQLHFARALMLDQTMPTSLDAGFDSVFTVQEPHIKCRIKTIYPLNRE CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEEEEEEEEECCCCC QDKALLALDTQAAED CCCEEEEEECCCCCC >Mature Secondary Structure SLFFLLQACSTTHLSRDEWELKVNDSISQWQLESVKKVNTFRLDSWASLGEKHLILRTS CCEEEEEHHCCCCCCCCCEEEEECCCCCHHHHHHHHHCCEEECCCHHCCCCEEEEEEEC PSKPYLVELDARCPQLHFARALMLDQTMPTSLDAGFDSVFTVQEPHIKCRIKTIYPLNRE CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEEEEEEEEECCCCC QDKALLALDTQAAED CCCEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA