Click here to switch to the map view.

The map label for this gene is pecM [H]

Identifier: 119776697

GI number: 119776697

Start: 4199788

End: 4200663

Strand: Reverse

Name: pecM [H]

Synonym: Sama_3565

Alternate gene names: 119776697

Gene position: 4200663-4199788 (Counterclockwise)

Preceding gene: 119776699

Following gene: 119776695

Centisome position: 97.55

GC content: 52.28

Gene sequence:

>876_bases
ATGAACATAATTTTAGCCATGTTGACAGCGGCCCTGTGGGGAACCACTTATGGGGTGACTCAATACACCTTACCCGACTG
GCCGCCCTTACTTTTGGGGGCGATTCGCGCGTTGCCGGCGGGGATAATTCTCTGGTGTTTTCGTCCCAGATTTCCCGTCC
GTGAGCATGGGTTGGCACTGCTGAAATTAGGGGCTGTAAACATAGCTCTCTTCTTCAGTCTGATTTTTGTGATGGCCCAT
ACCCTGCCATCCGCTATCTCGGGTGTGGGCATGGTATCAGTTCCGCTGTTTGCGATGATCTTCCAATTTGTGGTGCTCAA
GCATAAGCCTTCAGGGGCGCAGATATTGGCTGGTGTTTTATTGTTGGTTTTGGGGTTGATGCTCTTTAATCCCGCCAGTC
TGTCTCTTAATCCGGTTGGGCTTGTCGCGATGTTTGCGGCCATAAGCTGCATCATTCTGGGCAGTCGCATGACCCAAACC
CTGAGTGGCAGGATGCATTGGTGGGATGTATTGGTTTGGCAATTGATTCTGGGGGGCGCCTTGCTTGCGTTGATAGGCTC
CGGTCAGTGGTTGATTGCACCAGGTGGATTTGCGGCTGTGGCAGATGGTATCAGTGGCCGGGAGTTTGCCGGCATCGCCT
GGATTGTGCTCTTCAACACTGTGCTTGCCTATGGTCTGTATGTGTTTTTGATGCAGCGGATGAGTATTGTCGACTTTACC
TTTGGTGGCATCGCCAACCCCATTACGGGTATTGCCCTGGGTGTGCTGCTGATGGGCGAACAGTACAGTCACACCCAGTA
CATGCTAATGGCCGGTATGATAGTGTCTTCACTCTTACCCAGCCTGTGGCAGCGCTTTAAACGGCCTGCTAACTAA

Upstream 100 bases:

>100_bases
CATACTTTCATCGATATAAAATTATCTTAGCATAAAGATACTTTACGAGAAGTTTTTTCTGCGTTAGCCTGAAAACAATC
TCAATATAAAGATACTTTGC

Downstream 100 bases:

>100_bases
GCCAATCAGCCCATGGCCGCTTTGACATACACGTCGAAGCGGTTTTTCTTGGTCTCGATGCGGGTACTGGGTCTGACGCC
ATCGAGATCCTCAGCATAGT

Product: DMT family permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MNIILAMLTAALWGTTYGVTQYTLPDWPPLLLGAIRALPAGIILWCFRPRFPVREHGLALLKLGAVNIALFFSLIFVMAH
TLPSAISGVGMVSVPLFAMIFQFVVLKHKPSGAQILAGVLLLVLGLMLFNPASLSLNPVGLVAMFAAISCIILGSRMTQT
LSGRMHWWDVLVWQLILGGALLALIGSGQWLIAPGGFAAVADGISGREFAGIAWIVLFNTVLAYGLYVFLMQRMSIVDFT
FGGIANPITGIALGVLLMGEQYSHTQYMLMAGMIVSSLLPSLWQRFKRPAN

Sequences:

>Translated_291_residues
MNIILAMLTAALWGTTYGVTQYTLPDWPPLLLGAIRALPAGIILWCFRPRFPVREHGLALLKLGAVNIALFFSLIFVMAH
TLPSAISGVGMVSVPLFAMIFQFVVLKHKPSGAQILAGVLLLVLGLMLFNPASLSLNPVGLVAMFAAISCIILGSRMTQT
LSGRMHWWDVLVWQLILGGALLALIGSGQWLIAPGGFAAVADGISGREFAGIAWIVLFNTVLAYGLYVFLMQRMSIVDFT
FGGIANPITGIALGVLLMGEQYSHTQYMLMAGMIVSSLLPSLWQRFKRPAN
>Mature_291_residues
MNIILAMLTAALWGTTYGVTQYTLPDWPPLLLGAIRALPAGIILWCFRPRFPVREHGLALLKLGAVNIALFFSLIFVMAH
TLPSAISGVGMVSVPLFAMIFQFVVLKHKPSGAQILAGVLLLVLGLMLFNPASLSLNPVGLVAMFAAISCIILGSRMTQT
LSGRMHWWDVLVWQLILGGALLALIGSGQWLIAPGGFAAVADGISGREFAGIAWIVLFNTVLAYGLYVFLMQRMSIVDFT
FGGIANPITGIALGVLLMGEQYSHTQYMLMAGMIVSSLLPSLWQRFKRPAN

Specific function: Involved in pectinase, cellulase, and blue pigment regulation [H]

COG id: COG0697

COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004779
- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 31431; Mature: 31431

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIILAMLTAALWGTTYGVTQYTLPDWPPLLLGAIRALPAGIILWCFRPRFPVREHGLAL
CHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHH
LKLGAVNIALFFSLIFVMAHTLPSAISGVGMVSVPLFAMIFQFVVLKHKPSGAQILAGVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
LLVLGLMLFNPASLSLNPVGLVAMFAAISCIILGSRMTQTLSGRMHWWDVLVWQLILGGA
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
LLALIGSGQWLIAPGGFAAVADGISGREFAGIAWIVLFNTVLAYGLYVFLMQRMSIVDFT
HHHHHCCCCEEEECCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGGIANPITGIALGVLLMGEQYSHTQYMLMAGMIVSSLLPSLWQRFKRPAN
HCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNIILAMLTAALWGTTYGVTQYTLPDWPPLLLGAIRALPAGIILWCFRPRFPVREHGLAL
CHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHH
LKLGAVNIALFFSLIFVMAHTLPSAISGVGMVSVPLFAMIFQFVVLKHKPSGAQILAGVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
LLVLGLMLFNPASLSLNPVGLVAMFAAISCIILGSRMTQTLSGRMHWWDVLVWQLILGGA
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
LLALIGSGQWLIAPGGFAAVADGISGREFAGIAWIVLFNTVLAYGLYVFLMQRMSIVDFT
HHHHHCCCCEEEECCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGGIANPITGIALGVLLMGEQYSHTQYMLMAGMIVSSLLPSLWQRFKRPAN
HCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8022282 [H]