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The map label for this gene is yafC [H]

Identifier: 119776681

GI number: 119776681

Start: 4181280

End: 4182179

Strand: Reverse

Name: yafC [H]

Synonym: Sama_3549

Alternate gene names: 119776681

Gene position: 4182179-4181280 (Counterclockwise)

Preceding gene: 119776684

Following gene: 119776680

Centisome position: 97.12

GC content: 55.78

Gene sequence:

>900_bases
ATGGACGCTTCACAATTGTACCGCATGCTGGTGTTTGCTTCGGTTGTAGAGCAAGGGTCACTGACCATGGCCGCAGAAGT
GTTGGGGATCAGCCGCTCCATGGTGAGCCAGCACCTGAAAAAGCTGGAAGAGCGGTTGGGCTGCGAGCTGCTTCACCGCA
CCACGAGGCGTATCAGCCTGACCGAAGATGGGCGGGAGTTTTTTCATTACTGCGGCGAACTATTGCAGCTGGCAAGGCAG
GCAGAGGCTGTGACCCGCCCGGCGGATGAGCATCTTCACGGTAGCCTCAGGGTCACGGCGCCGGTTGGTCTGGGAGAACA
TAACCTGCTGCCCCTTATCGGCGACTTTCATCGCCGTTACCCCAACATTCGTCTGACATTGATGCTGGAGGACAGCAAGC
TCAACCTCCTCGAACATCAAATTGACGTGGCCATACAGGCAGGTTGGCCGGAAGATTCAGAATTCAGGGCCATTAAGCTT
GGCAGTTTTGATGAGCAGTTGGTGGCCAGCCCCGAGTATGTGGCGGCTCATGGAAAGCCCTTGCACCCCGACAACTTACA
GCATCATCAATGGTTGGCGCATGCGTCCGGCCATTTGCCGAAAACCTGGACGTTGCACAATGGTCAGGGTGAGGAGTTTC
GGGTCAGGATCACTCCATTTATCAGCTGCAACAGTACCAATGGCCTGATTGCCATGGCGCTGCAGGGGCTGGGGGTGGCA
ATACTGCCCGATAATCTGGTGAACGAGCATTTGGCGTCCGGGGCCTTGGAACTGCTTTTGCCGGATTATCATTTACGCGA
AGGCGGCGTGTATGCCCTGCATCCCTATAAAGAGAATACTCCCCCCAGAGTGCGGGTATTTCTCGACTTTCTGAAGGAGC
GGTTGATCCAATCCCGCTAA

Upstream 100 bases:

>100_bases
GTTGGTATGAATGAGGTGCTCAGTTTATTCCCGTGGCGAAATCGGATAATGAGTGATTTACTTATATCTTTGGTAATTCA
AACTTAACAAAAGGTCGCCC

Downstream 100 bases:

>100_bases
AACCAACTAAATTAAACAAAGGGCGTTTGATTGGGAGCCGGATTCCATGGAGCTCTTTTACCACCCGTTGTCGCGATATT
CCCAAAAAGTTCTGCTTGGA

Product: LyrR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MDASQLYRMLVFASVVEQGSLTMAAEVLGISRSMVSQHLKKLEERLGCELLHRTTRRISLTEDGREFFHYCGELLQLARQ
AEAVTRPADEHLHGSLRVTAPVGLGEHNLLPLIGDFHRRYPNIRLTLMLEDSKLNLLEHQIDVAIQAGWPEDSEFRAIKL
GSFDEQLVASPEYVAAHGKPLHPDNLQHHQWLAHASGHLPKTWTLHNGQGEEFRVRITPFISCNSTNGLIAMALQGLGVA
ILPDNLVNEHLASGALELLLPDYHLREGGVYALHPYKENTPPRVRVFLDFLKERLIQSR

Sequences:

>Translated_299_residues
MDASQLYRMLVFASVVEQGSLTMAAEVLGISRSMVSQHLKKLEERLGCELLHRTTRRISLTEDGREFFHYCGELLQLARQ
AEAVTRPADEHLHGSLRVTAPVGLGEHNLLPLIGDFHRRYPNIRLTLMLEDSKLNLLEHQIDVAIQAGWPEDSEFRAIKL
GSFDEQLVASPEYVAAHGKPLHPDNLQHHQWLAHASGHLPKTWTLHNGQGEEFRVRITPFISCNSTNGLIAMALQGLGVA
ILPDNLVNEHLASGALELLLPDYHLREGGVYALHPYKENTPPRVRVFLDFLKERLIQSR
>Mature_299_residues
MDASQLYRMLVFASVVEQGSLTMAAEVLGISRSMVSQHLKKLEERLGCELLHRTTRRISLTEDGREFFHYCGELLQLARQ
AEAVTRPADEHLHGSLRVTAPVGLGEHNLLPLIGDFHRRYPNIRLTLMLEDSKLNLLEHQIDVAIQAGWPEDSEFRAIKL
GSFDEQLVASPEYVAAHGKPLHPDNLQHHQWLAHASGHLPKTWTLHNGQGEEFRVRITPFISCNSTNGLIAMALQGLGVA
ILPDNLVNEHLASGALELLLPDYHLREGGVYALHPYKENTPPRVRVFLDFLKERLIQSR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=286, Percent_Identity=37.0629370629371, Blast_Score=178, Evalue=3e-46,
Organism=Escherichia coli, GI1789639, Length=293, Percent_Identity=30.3754266211604, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI87081978, Length=284, Percent_Identity=29.9295774647887, Blast_Score=121, Evalue=7e-29,
Organism=Escherichia coli, GI145693193, Length=291, Percent_Identity=28.1786941580756, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1787128, Length=297, Percent_Identity=26.2626262626263, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1787589, Length=298, Percent_Identity=27.1812080536913, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1789440, Length=283, Percent_Identity=27.9151943462898, Blast_Score=107, Evalue=7e-25,
Organism=Escherichia coli, GI1788706, Length=305, Percent_Identity=26.8852459016393, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1790011, Length=294, Percent_Identity=25.5102040816327, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1789173, Length=267, Percent_Identity=28.8389513108614, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI157672245, Length=152, Percent_Identity=32.8947368421053, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1788481, Length=307, Percent_Identity=25.4071661237785, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1788748, Length=122, Percent_Identity=34.4262295081967, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786448, Length=257, Percent_Identity=26.8482490272374, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787806, Length=265, Percent_Identity=25.6603773584906, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787601, Length=299, Percent_Identity=21.4046822742475, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI87082132, Length=174, Percent_Identity=28.1609195402299, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1788297, Length=142, Percent_Identity=29.5774647887324, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33693; Mature: 33693

Theoretical pI: Translated: 6.70; Mature: 6.70

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDASQLYRMLVFASVVEQGSLTMAAEVLGISRSMVSQHLKKLEERLGCELLHRTTRRISL
CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE
TEDGREFFHYCGELLQLARQAEAVTRPADEHLHGSLRVTAPVGLGEHNLLPLIGDFHRRY
CCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHC
PNIRLTLMLEDSKLNLLEHQIDVAIQAGWPEDSEFRAIKLGSFDEQLVASPEYVAAHGKP
CCEEEEEEEECCCHHHHHHHEEEEEECCCCCCCCEEEEEECCCCHHHHCCCCCEECCCCC
LHPDNLQHHQWLAHASGHLPKTWTLHNGQGEEFRVRITPFISCNSTNGLIAMALQGLGVA
CCCCCCCHHHHHHHCCCCCCCEEEEECCCCCEEEEEEEEEEEECCCCCHHEEHHHCCCEE
ILPDNLVNEHLASGALELLLPDYHLREGGVYALHPYKENTPPRVRVFLDFLKERLIQSR
EECHHHHHHHHHHCHHHHHCCCCEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDASQLYRMLVFASVVEQGSLTMAAEVLGISRSMVSQHLKKLEERLGCELLHRTTRRISL
CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE
TEDGREFFHYCGELLQLARQAEAVTRPADEHLHGSLRVTAPVGLGEHNLLPLIGDFHRRY
CCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHC
PNIRLTLMLEDSKLNLLEHQIDVAIQAGWPEDSEFRAIKLGSFDEQLVASPEYVAAHGKP
CCEEEEEEEECCCHHHHHHHEEEEEECCCCCCCCEEEEEECCCCHHHHCCCCCEECCCCC
LHPDNLQHHQWLAHASGHLPKTWTLHNGQGEEFRVRITPFISCNSTNGLIAMALQGLGVA
CCCCCCCHHHHHHHCCCCCCCEEEEECCCCCEEEEEEEEEEEECCCCCHHEEHHHCCCEE
ILPDNLVNEHLASGALELLLPDYHLREGGVYALHPYKENTPPRVRVFLDFLKERLIQSR
EECHHHHHHHHHHCHHHHHCCCCEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]