| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is acyII [H]
Identifier: 119776672
GI number: 119776672
Start: 4170831
End: 4173137
Strand: Direct
Name: acyII [H]
Synonym: Sama_3540
Alternate gene names: 119776672
Gene position: 4170831-4173137 (Clockwise)
Preceding gene: 119776671
Following gene: 119776673
Centisome position: 96.86
GC content: 57.39
Gene sequence:
>2307_bases ATGTTAAAAGCCATCAAATGGGCACTGCTGCTGGTATTCGTGGTGTGCGCCAGTCTGTATTTCGCCTTTCGCGCCAGTCT GCCTGAACTCAGTGGCAACACTATCGCCCCAGGGCTGGAGCAGGCTGTCGACATCGAGCGCGATACTCTGGGTACGGCCA TCATTCGGGCTCAAAGCCGACGCGACGCAGCCTTTGGGTTGGGCTATGCCCACGGACAGGACAGATTTTTTCAGATGGAT TTGCTGCGCCGCAACTCAGCTGGCGAGCTGGCCGAGCTCTTTGGCGATGGGGCGCTGACCCTTGATGAGCGCCACCGCTT TCACCAATTCAGAAAGCGTGCCCGGGCGCTGCTGTCGCGCCTGCCTGCAAAAGACAGAGCCGTGCTGGAAGCCTATAGCC TCGGCGTCAATCAGGCACTGTCGCAGCAAACCCTGCCCAGTTTTGAGTACCTGCTGAGCGGTGGTGAAATCACGCCCTGG CAACCCGAAGACAGCCTGCTGACTATCTTCTCCATGTATCTGGATTTACAGGGGAACACGGTTGAACGTGAACTGGTACT GGAGCGCATCAAACAGCTTTATGGTAATGAAATGCTCGCCTTCGTCAGCCAGAACGATCCTATTCAGGCAGCATTGGACG GCAGTACCTTACCCACCCAGGCAATGGTGGCGCCCACCTTATCGGCCACCGCGCTCGATAGAGCACAGCAAAGCCCCATT GGCAGCGAACTCGATGCCTTTGTTAAGGGCAGCAACAACTGGGCGGTCACGGGTCAACTTACCCAGTCCGGACACGCCAT GCTGTCGGATGATATGCACCTCGGCCTCGCGGTCCCCATTATCTGGTACAGAGCCCAACTCAATTACCGCCATCAAGGCG GTGAAACCGGCGAGCGCGACATTCAGGTCACAGGTGTGAGCCTGCCAGGCGCTCCTGTGATTGTGGTGGGCACCAATGGT CGTATCGCCTGGGGCTTTACCAACGGCTATATCGACACTGCAGACTGGATTGAGCTGGACGGCAACGAAGAAACAGAGAT CGTCACAGAACAGCTCAAAAGCAAAGGCACGGGTAAAGAGATGGCGCTCAAGTTATCCCGCTTTGGCCCGGTAAAACGCC TCGGCGACAAAGACTATGCGCTGTCCTGGGTGGCCCACGGCGACTTTGCCATTAACCTCAACCTGATGCATCTGGAAACC GCCACCCACGTGGATGAGGGACTTAAACTCACCCGGCACACGGGGATCCCGGTGCAGAACATGCTGATAGTGGATGAGGC CGGTAATGCGGCCTGGCGCCTGACCGGTGCCATTTCGGCGCGGGATAACCCGACTCAAACTGCACAGTCAGCCGATGGCT GGCAAGCCGATAGGTGGGCAGTACCTGCTGAAGATGTGCCCGTTGTCAGTAACCCCGCCAATCAACGGCTATGGAGCGCC AATAGCCGTGTGCTGTCGGTATCAGACACCCAACGCTTCGGCGATGGCGGTTACGCCATCGCCAGTCGTGCTGCGCAAAT TCGCGATACCCTGCAGACCAAAGACAGTTTCGACGAGCGGGACTTTCTCGCGATGCAACTGGATAACCGGGCGCTGTTTC TTGCTCCCTGGCATCAGCTGTTGACCGACACACTGGAAAAGCAACAGGATGAATTTGCGGATGACCTCAAGGCGCTGGCC AGTTGGGGCGGCTGTGCCTGCAGCGATTCGGTGGGCTACCCCCTGGTAAACAGTTTCCGTATTCGGGTCATGGACAGCCT GTTTGCCCCGTTGCAAACCCGCCTCGCCGAAGAAGGTCTCAGCCTGAGCAAAATCAAGGGGAATCTGGAAGTGTCCGTAT GGCAATTGCTCCGCCAACAGCCAGAATCCTGGCTTCCCGAGAAAATGGCCGACTGGGACAGCTACCTGCTGCAGATTTAC CGCCATAATCGGGCTGAACTGCTAAGCCGCCATTCTCAAGCAGGTAAGCTTGCCGATCTCAATTGGGGCAAGGTTAACGC GCTCAAAATACAGCACCCTTTCAGCAAGCAGATCCCGCTGTTGGCGCCGCTGTTGGACATGCCACAGGTGCCGGGTTTTG GAGGCCACTTCGAACCCGCAGTACAAAGCTCAGGCTTTGGCGCCTCCCAGCGTCTTATCGTGCAGCCGGGGCGCGAATCC AATGGCATCCTGATGGTACCGGGCGGTCAATCGGGCCATCCGTTATCGCCCTATTACCGCAGTGGCTTTGACGATTACGC CAATCACAGGCCAACACCCTTACTGCCTGGCGAGGTAAAACACATGCTGCGTTTATCCCCGCAGTAA
Upstream 100 bases:
>100_bases AAAGCGCCAAATTCAGCAATTTACAAGCTGGCTGGACGAGCAAATCGGCACAGATGCCGACCAATAACCGCCGTGGCAAT GACTATCAAGGAAGAACCCC
Downstream 100 bases:
>100_bases ACCAAATCAACAGGAACGCCTGCCAACTGGCCCGATGATTTGCCAAAACCGTGGAAATGTTCGAGTCTGAGTAAACAAGA TTCAACAGGGCATTAGCCAT
Product: penicillin amidase
Products: NA
Alternate protein names: Cephalosporin acylase II; Penicillin acylase II; Penicillin amidase II; Penicillin acylase II small subunit; Penicillin acylase II large subunit [H]
Number of amino acids: Translated: 768; Mature: 768
Protein sequence:
>768_residues MLKAIKWALLLVFVVCASLYFAFRASLPELSGNTIAPGLEQAVDIERDTLGTAIIRAQSRRDAAFGLGYAHGQDRFFQMD LLRRNSAGELAELFGDGALTLDERHRFHQFRKRARALLSRLPAKDRAVLEAYSLGVNQALSQQTLPSFEYLLSGGEITPW QPEDSLLTIFSMYLDLQGNTVERELVLERIKQLYGNEMLAFVSQNDPIQAALDGSTLPTQAMVAPTLSATALDRAQQSPI GSELDAFVKGSNNWAVTGQLTQSGHAMLSDDMHLGLAVPIIWYRAQLNYRHQGGETGERDIQVTGVSLPGAPVIVVGTNG RIAWGFTNGYIDTADWIELDGNEETEIVTEQLKSKGTGKEMALKLSRFGPVKRLGDKDYALSWVAHGDFAINLNLMHLET ATHVDEGLKLTRHTGIPVQNMLIVDEAGNAAWRLTGAISARDNPTQTAQSADGWQADRWAVPAEDVPVVSNPANQRLWSA NSRVLSVSDTQRFGDGGYAIASRAAQIRDTLQTKDSFDERDFLAMQLDNRALFLAPWHQLLTDTLEKQQDEFADDLKALA SWGGCACSDSVGYPLVNSFRIRVMDSLFAPLQTRLAEEGLSLSKIKGNLEVSVWQLLRQQPESWLPEKMADWDSYLLQIY RHNRAELLSRHSQAGKLADLNWGKVNALKIQHPFSKQIPLLAPLLDMPQVPGFGGHFEPAVQSSGFGASQRLIVQPGRES NGILMVPGGQSGHPLSPYYRSGFDDYANHRPTPLLPGEVKHMLRLSPQ
Sequences:
>Translated_768_residues MLKAIKWALLLVFVVCASLYFAFRASLPELSGNTIAPGLEQAVDIERDTLGTAIIRAQSRRDAAFGLGYAHGQDRFFQMD LLRRNSAGELAELFGDGALTLDERHRFHQFRKRARALLSRLPAKDRAVLEAYSLGVNQALSQQTLPSFEYLLSGGEITPW QPEDSLLTIFSMYLDLQGNTVERELVLERIKQLYGNEMLAFVSQNDPIQAALDGSTLPTQAMVAPTLSATALDRAQQSPI GSELDAFVKGSNNWAVTGQLTQSGHAMLSDDMHLGLAVPIIWYRAQLNYRHQGGETGERDIQVTGVSLPGAPVIVVGTNG RIAWGFTNGYIDTADWIELDGNEETEIVTEQLKSKGTGKEMALKLSRFGPVKRLGDKDYALSWVAHGDFAINLNLMHLET ATHVDEGLKLTRHTGIPVQNMLIVDEAGNAAWRLTGAISARDNPTQTAQSADGWQADRWAVPAEDVPVVSNPANQRLWSA NSRVLSVSDTQRFGDGGYAIASRAAQIRDTLQTKDSFDERDFLAMQLDNRALFLAPWHQLLTDTLEKQQDEFADDLKALA SWGGCACSDSVGYPLVNSFRIRVMDSLFAPLQTRLAEEGLSLSKIKGNLEVSVWQLLRQQPESWLPEKMADWDSYLLQIY RHNRAELLSRHSQAGKLADLNWGKVNALKIQHPFSKQIPLLAPLLDMPQVPGFGGHFEPAVQSSGFGASQRLIVQPGRES NGILMVPGGQSGHPLSPYYRSGFDDYANHRPTPLLPGEVKHMLRLSPQ >Mature_768_residues MLKAIKWALLLVFVVCASLYFAFRASLPELSGNTIAPGLEQAVDIERDTLGTAIIRAQSRRDAAFGLGYAHGQDRFFQMD LLRRNSAGELAELFGDGALTLDERHRFHQFRKRARALLSRLPAKDRAVLEAYSLGVNQALSQQTLPSFEYLLSGGEITPW QPEDSLLTIFSMYLDLQGNTVERELVLERIKQLYGNEMLAFVSQNDPIQAALDGSTLPTQAMVAPTLSATALDRAQQSPI GSELDAFVKGSNNWAVTGQLTQSGHAMLSDDMHLGLAVPIIWYRAQLNYRHQGGETGERDIQVTGVSLPGAPVIVVGTNG RIAWGFTNGYIDTADWIELDGNEETEIVTEQLKSKGTGKEMALKLSRFGPVKRLGDKDYALSWVAHGDFAINLNLMHLET ATHVDEGLKLTRHTGIPVQNMLIVDEAGNAAWRLTGAISARDNPTQTAQSADGWQADRWAVPAEDVPVVSNPANQRLWSA NSRVLSVSDTQRFGDGGYAIASRAAQIRDTLQTKDSFDERDFLAMQLDNRALFLAPWHQLLTDTLEKQQDEFADDLKALA SWGGCACSDSVGYPLVNSFRIRVMDSLFAPLQTRLAEEGLSLSKIKGNLEVSVWQLLRQQPESWLPEKMADWDSYLLQIY RHNRAELLSRHSQAGKLADLNWGKVNALKIQHPFSKQIPLLAPLLDMPQVPGFGGHFEPAVQSSGFGASQRLIVQPGRES NGILMVPGGQSGHPLSPYYRSGFDDYANHRPTPLLPGEVKHMLRLSPQ
Specific function: Unknown
COG id: COG2366
COG function: function code R; Protein related to penicillin acylase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S45 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014395 - InterPro: IPR002692 [H]
Pfam domain/function: PF01804 Penicil_amidase [H]
EC number: =3.5.1.11 [H]
Molecular weight: Translated: 84799; Mature: 84799
Theoretical pI: Translated: 5.84; Mature: 5.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKAIKWALLLVFVVCASLYFAFRASLPELSGNTIAPGLEQAVDIERDTLGTAIIRAQSR CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHCC RDAAFGLGYAHGQDRFFQMDLLRRNSAGELAELFGDGALTLDERHRFHQFRKRARALLSR CCHHHCCCEECCCCCEEEHHHHHCCCCHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHH LPAKDRAVLEAYSLGVNQALSQQTLPSFEYLLSGGEITPWQPEDSLLTIFSMYLDLQGNT CCCCHHHHHHHHHHCHHHHHHHHCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCC VERELVLERIKQLYGNEMLAFVSQNDPIQAALDGSTLPTQAMVAPTLSATALDRAQQSPI HHHHHHHHHHHHHHCCCEEEEECCCCCEEEEECCCCCCCHHHHCCCHHHHHHHHHHCCCC GSELDAFVKGSNNWAVTGQLTQSGHAMLSDDMHLGLAVPIIWYRAQLNYRHQGGETGERD CCHHHHHEECCCCEEEEEEECCCCCEEECCCCCCCCHHEEEEEEEEECEECCCCCCCCCE IQVTGVSLPGAPVIVVGTNGRIAWGFTNGYIDTADWIELDGNEETEIVTEQLKSKGTGKE EEEEEEECCCCCEEEEECCCEEEEEECCCEECCCCEEEECCCCHHHHHHHHHHCCCCCHH MALKLSRFGPVKRLGDKDYALSWVAHGDFAINLNLMHLETATHVDEGLKLTRHTGIPVQN HHHHHHHCCCHHHCCCCCCEEEEEECCCEEEEEEEEEEEHHHHHHHCCEEEECCCCCEEE MLIVDEAGNAAWRLTGAISARDNPTQTAQSADGWQADRWAVPAEDVPVVSNPANQRLWSA EEEEECCCCCEEEEEEEEECCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHEECC NSRVLSVSDTQRFGDGGYAIASRAAQIRDTLQTKDSFDERDFLAMQLDNRALFLAPWHQL CCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEECHHHH LTDTLEKQQDEFADDLKALASWGGCACSDSVGYPLVNSFRIRVMDSLFAPLQTRLAEEGL HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC SLSKIKGNLEVSVWQLLRQQPESWLPEKMADWDSYLLQIYRHNRAELLSRHSQAGKLADL CEEHHCCCCCHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEECC NWGKVNALKIQHPFSKQIPLLAPLLDMPQVPGFGGHFEPAVQSSGFGASQRLIVQPGRES CCCCEEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCEEEEECCCCC NGILMVPGGQSGHPLSPYYRSGFDDYANHRPTPLLPGEVKHMLRLSPQ CCEEEECCCCCCCCCCHHHHCCCHHHHCCCCCCCCCHHHHHHHHCCCC >Mature Secondary Structure MLKAIKWALLLVFVVCASLYFAFRASLPELSGNTIAPGLEQAVDIERDTLGTAIIRAQSR CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHCC RDAAFGLGYAHGQDRFFQMDLLRRNSAGELAELFGDGALTLDERHRFHQFRKRARALLSR CCHHHCCCEECCCCCEEEHHHHHCCCCHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHH LPAKDRAVLEAYSLGVNQALSQQTLPSFEYLLSGGEITPWQPEDSLLTIFSMYLDLQGNT CCCCHHHHHHHHHHCHHHHHHHHCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCC VERELVLERIKQLYGNEMLAFVSQNDPIQAALDGSTLPTQAMVAPTLSATALDRAQQSPI HHHHHHHHHHHHHHCCCEEEEECCCCCEEEEECCCCCCCHHHHCCCHHHHHHHHHHCCCC GSELDAFVKGSNNWAVTGQLTQSGHAMLSDDMHLGLAVPIIWYRAQLNYRHQGGETGERD CCHHHHHEECCCCEEEEEEECCCCCEEECCCCCCCCHHEEEEEEEEECEECCCCCCCCCE IQVTGVSLPGAPVIVVGTNGRIAWGFTNGYIDTADWIELDGNEETEIVTEQLKSKGTGKE EEEEEEECCCCCEEEEECCCEEEEEECCCEECCCCEEEECCCCHHHHHHHHHHCCCCCHH MALKLSRFGPVKRLGDKDYALSWVAHGDFAINLNLMHLETATHVDEGLKLTRHTGIPVQN HHHHHHHCCCHHHCCCCCCEEEEEECCCEEEEEEEEEEEHHHHHHHCCEEEECCCCCEEE MLIVDEAGNAAWRLTGAISARDNPTQTAQSADGWQADRWAVPAEDVPVVSNPANQRLWSA EEEEECCCCCEEEEEEEEECCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHEECC NSRVLSVSDTQRFGDGGYAIASRAAQIRDTLQTKDSFDERDFLAMQLDNRALFLAPWHQL CCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEECHHHH LTDTLEKQQDEFADDLKALASWGGCACSDSVGYPLVNSFRIRVMDSLFAPLQTRLAEEGL HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC SLSKIKGNLEVSVWQLLRQQPESWLPEKMADWDSYLLQIYRHNRAELLSRHSQAGKLADL CEEHHCCCCCHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEECC NWGKVNALKIQHPFSKQIPLLAPLLDMPQVPGFGGHFEPAVQSSGFGASQRLIVQPGRES CCCCEEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCEEEEECCCCC NGILMVPGGQSGHPLSPYYRSGFDDYANHRPTPLLPGEVKHMLRLSPQ CCEEEECCCCCCCCCCHHHHCCCHHHHCCCCCCCCCHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 3680178 [H]