Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119776665

Identifier: 119776665

GI number: 119776665

Start: 4165127

End: 4165651

Strand: Direct

Name: 119776665

Synonym: Sama_3533

Alternate gene names: NA

Gene position: 4165127-4165651 (Clockwise)

Preceding gene: 119776664

Following gene: 119776666

Centisome position: 96.73

GC content: 53.52

Gene sequence:

>525_bases
ATGAGATATTGGTTGCTTGGAGCAATGATGGTGACAGCCGGCGCCTCGGCCAACACCAGTTTGTTCAACTTGCTCAATAC
GGGTGACAGAGTCAACCCTGTGGCCATGATGGAAAGGGTGGAGACAGACCATCCCGGCTATATCGCCGATTTTGAGCTTG
ATGTGCAGGACGGAGAACTCAGATATGAGTTCGACGTGATCAATGCCGATGAAAACACCCTTACAGAGCTGACCTTTCGC
GCCGCCGATGGCACACTGGTGCTGCAACGCAACAGTAAGCTGGAAGCCGATGACCACGACGAGCTGGAAGCGGTAAAGCT
GCTCGACCGCAAGCAACTGCGTTTTTCCGAACTGGTGCGCATGGCCAGCGATCAGCACGAAGGCAAGTTGATGGGCGCCC
AGCTGGAGCACGATCTGGGGATCAGCTACCTTGAATTCAAAATGGTGGATGAAAACGGCAAGCGCAAACACGCCTTTGAC
ATCCAAAAGCTTAAACCCTTGCCAATGCTGCAATGGGAACGCTGA

Upstream 100 bases:

>100_bases
GGCTGGCGCGGCCCGGAAGTGGAGATAGACAGCATCCGCGTGGTGACATCGCCGGGATAGTCTTTTAGGATACCGACACT
GGTTTTTTACGGAGGCATCA

Downstream 100 bases:

>100_bases
GCCACACTAAGGAGCAACAGTGAAAATCCTTTTGGTTGAAGACGACAACACCACTTCAGAATACATAGTCAAAGGTTTTT
CCGAACAGGGACACAATATT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MRYWLLGAMMVTAGASANTSLFNLLNTGDRVNPVAMMERVETDHPGYIADFELDVQDGELRYEFDVINADENTLTELTFR
AADGTLVLQRNSKLEADDHDELEAVKLLDRKQLRFSELVRMASDQHEGKLMGAQLEHDLGISYLEFKMVDENGKRKHAFD
IQKLKPLPMLQWER

Sequences:

>Translated_174_residues
MRYWLLGAMMVTAGASANTSLFNLLNTGDRVNPVAMMERVETDHPGYIADFELDVQDGELRYEFDVINADENTLTELTFR
AADGTLVLQRNSKLEADDHDELEAVKLLDRKQLRFSELVRMASDQHEGKLMGAQLEHDLGISYLEFKMVDENGKRKHAFD
IQKLKPLPMLQWER
>Mature_174_residues
MRYWLLGAMMVTAGASANTSLFNLLNTGDRVNPVAMMERVETDHPGYIADFELDVQDGELRYEFDVINADENTLTELTFR
AADGTLVLQRNSKLEADDHDELEAVKLLDRKQLRFSELVRMASDQHEGKLMGAQLEHDLGISYLEFKMVDENGKRKHAFD
IQKLKPLPMLQWER

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19974; Mature: 19974

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYWLLGAMMVTAGASANTSLFNLLNTGDRVNPVAMMERVETDHPGYIADFELDVQDGEL
CCEEHEEHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHCCCCCCEEEEEEEECCCCCE
RYEFDVINADENTLTELTFRAADGTLVLQRNSKLEADDHDELEAVKLLDRKQLRFSELVR
EEEEEEEECCCCCEEEEEEEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
MASDQHEGKLMGAQLEHDLGISYLEFKMVDENGKRKHAFDIQKLKPLPMLQWER
HHCCCCCCEEECCEECCCCCCEEEEEEEECCCCCCCCCCCHHHCCCCCCCCCCC
>Mature Secondary Structure
MRYWLLGAMMVTAGASANTSLFNLLNTGDRVNPVAMMERVETDHPGYIADFELDVQDGEL
CCEEHEEHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHCCCCCCEEEEEEEECCCCCE
RYEFDVINADENTLTELTFRAADGTLVLQRNSKLEADDHDELEAVKLLDRKQLRFSELVR
EEEEEEEECCCCCEEEEEEEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
MASDQHEGKLMGAQLEHDLGISYLEFKMVDENGKRKHAFDIQKLKPLPMLQWER
HHCCCCCCEEECCEECCCCCCEEEEEEEECCCCCCCCCCCHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA