Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

Click here to switch to the map view.

The map label for this gene is 119776604

Identifier: 119776604

GI number: 119776604

Start: 4101592

End: 4102041

Strand: Direct

Name: 119776604

Synonym: Sama_3472

Alternate gene names: NA

Gene position: 4101592-4102041 (Clockwise)

Preceding gene: 119776602

Following gene: 119776605

Centisome position: 95.25

GC content: 53.56

Gene sequence:

>450_bases
ATGTCGCTGATGCTGCGTAAACCATTGCTGGTGATGATTACCCTGCTTGCCCTTGTGGGACAGGCATTGGTGGGTAATGG
CCACGCCATGGTAATGCAACCCGACATGGCCAAGCCTATGGATAGCGCCGTCATGGCTCAGCACCCTGAAATGGCCGACA
CGACCCATGATTGTTGTGACAGCCTGGACATGCCAACGCTTCCCGACCACAGCATGTCTTCCTGTTGCGATGGTAATGGG
TTTTGTACCGGTGATTGCAGTCATTGCCTGACTATTTCGGTTAATCTGAGCCTGCCCATTGGCAATGTCTGGCCATTTTC
CTATGGTCCGGAAGAAGCCATGGCGCTGCCCTTGCCTCATTTCCACTCCATTGCGCCCACTGCCGCCTTCAAGCCCCCCC
AGGGCCTGAACGCACACCTCAAAAATACGCAATTAATTCAGTTTCTTTGA

Upstream 100 bases:

>100_bases
ATGTCAACAGCGCACTGATAGCTGCGGGTTTGTGAGTAAAATCAATATCCAATTAATGGCACTGTGCTAATATCGACGCT
GTTCATAGTTTGAGGTCATT

Downstream 100 bases:

>100_bases
ATATAAGGTCGTTGCAGCTTTTCTCATTCCGCTGCTGACCCGAGTGGAGTATCTCTATGAAAACACTGATTGGCCTGTTT
TTGGCCGCCCTTTTATCTGT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 149; Mature: 148

Protein sequence:

>149_residues
MSLMLRKPLLVMITLLALVGQALVGNGHAMVMQPDMAKPMDSAVMAQHPEMADTTHDCCDSLDMPTLPDHSMSSCCDGNG
FCTGDCSHCLTISVNLSLPIGNVWPFSYGPEEAMALPLPHFHSIAPTAAFKPPQGLNAHLKNTQLIQFL

Sequences:

>Translated_149_residues
MSLMLRKPLLVMITLLALVGQALVGNGHAMVMQPDMAKPMDSAVMAQHPEMADTTHDCCDSLDMPTLPDHSMSSCCDGNG
FCTGDCSHCLTISVNLSLPIGNVWPFSYGPEEAMALPLPHFHSIAPTAAFKPPQGLNAHLKNTQLIQFL
>Mature_148_residues
SLMLRKPLLVMITLLALVGQALVGNGHAMVMQPDMAKPMDSAVMAQHPEMADTTHDCCDSLDMPTLPDHSMSSCCDGNGF
CTGDCSHCLTISVNLSLPIGNVWPFSYGPEEAMALPLPHFHSIAPTAAFKPPQGLNAHLKNTQLIQFL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16016; Mature: 15885

Theoretical pI: Translated: 5.74; Mature: 5.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.7 %Cys     (Translated Protein)
8.1 %Met     (Translated Protein)
12.8 %Cys+Met (Translated Protein)
4.7 %Cys     (Mature Protein)
7.4 %Met     (Mature Protein)
12.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLMLRKPLLVMITLLALVGQALVGNGHAMVMQPDMAKPMDSAVMAQHPEMADTTHDCCD
CCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHCCCCCCCCHHHHHH
SLDMPTLPDHSMSSCCDGNGFCTGDCSHCLTISVNLSLPIGNVWPFSYGPEEAMALPLPH
CCCCCCCCCCCCHHCCCCCCEECCCCCCEEEEEEEEECCCCCCCCCCCCCCCCEECCCCC
FHSIAPTAAFKPPQGLNAHLKNTQLIQFL
CCCCCCCCCCCCCCCCCCCCCCCEEEECC
>Mature Secondary Structure 
SLMLRKPLLVMITLLALVGQALVGNGHAMVMQPDMAKPMDSAVMAQHPEMADTTHDCCD
CCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHCCCCCCCCHHHHHH
SLDMPTLPDHSMSSCCDGNGFCTGDCSHCLTISVNLSLPIGNVWPFSYGPEEAMALPLPH
CCCCCCCCCCCCHHCCCCCCEECCCCCCEEEEEEEEECCCCCCCCCCCCCCCCEECCCCC
FHSIAPTAAFKPPQGLNAHLKNTQLIQFL
CCCCCCCCCCCCCCCCCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA