| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119776604
Identifier: 119776604
GI number: 119776604
Start: 4101592
End: 4102041
Strand: Direct
Name: 119776604
Synonym: Sama_3472
Alternate gene names: NA
Gene position: 4101592-4102041 (Clockwise)
Preceding gene: 119776602
Following gene: 119776605
Centisome position: 95.25
GC content: 53.56
Gene sequence:
>450_bases ATGTCGCTGATGCTGCGTAAACCATTGCTGGTGATGATTACCCTGCTTGCCCTTGTGGGACAGGCATTGGTGGGTAATGG CCACGCCATGGTAATGCAACCCGACATGGCCAAGCCTATGGATAGCGCCGTCATGGCTCAGCACCCTGAAATGGCCGACA CGACCCATGATTGTTGTGACAGCCTGGACATGCCAACGCTTCCCGACCACAGCATGTCTTCCTGTTGCGATGGTAATGGG TTTTGTACCGGTGATTGCAGTCATTGCCTGACTATTTCGGTTAATCTGAGCCTGCCCATTGGCAATGTCTGGCCATTTTC CTATGGTCCGGAAGAAGCCATGGCGCTGCCCTTGCCTCATTTCCACTCCATTGCGCCCACTGCCGCCTTCAAGCCCCCCC AGGGCCTGAACGCACACCTCAAAAATACGCAATTAATTCAGTTTCTTTGA
Upstream 100 bases:
>100_bases ATGTCAACAGCGCACTGATAGCTGCGGGTTTGTGAGTAAAATCAATATCCAATTAATGGCACTGTGCTAATATCGACGCT GTTCATAGTTTGAGGTCATT
Downstream 100 bases:
>100_bases ATATAAGGTCGTTGCAGCTTTTCTCATTCCGCTGCTGACCCGAGTGGAGTATCTCTATGAAAACACTGATTGGCCTGTTT TTGGCCGCCCTTTTATCTGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 149; Mature: 148
Protein sequence:
>149_residues MSLMLRKPLLVMITLLALVGQALVGNGHAMVMQPDMAKPMDSAVMAQHPEMADTTHDCCDSLDMPTLPDHSMSSCCDGNG FCTGDCSHCLTISVNLSLPIGNVWPFSYGPEEAMALPLPHFHSIAPTAAFKPPQGLNAHLKNTQLIQFL
Sequences:
>Translated_149_residues MSLMLRKPLLVMITLLALVGQALVGNGHAMVMQPDMAKPMDSAVMAQHPEMADTTHDCCDSLDMPTLPDHSMSSCCDGNG FCTGDCSHCLTISVNLSLPIGNVWPFSYGPEEAMALPLPHFHSIAPTAAFKPPQGLNAHLKNTQLIQFL >Mature_148_residues SLMLRKPLLVMITLLALVGQALVGNGHAMVMQPDMAKPMDSAVMAQHPEMADTTHDCCDSLDMPTLPDHSMSSCCDGNGF CTGDCSHCLTISVNLSLPIGNVWPFSYGPEEAMALPLPHFHSIAPTAAFKPPQGLNAHLKNTQLIQFL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16016; Mature: 15885
Theoretical pI: Translated: 5.74; Mature: 5.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.7 %Cys (Translated Protein) 8.1 %Met (Translated Protein) 12.8 %Cys+Met (Translated Protein) 4.7 %Cys (Mature Protein) 7.4 %Met (Mature Protein) 12.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLMLRKPLLVMITLLALVGQALVGNGHAMVMQPDMAKPMDSAVMAQHPEMADTTHDCCD CCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHCCCCCCCCHHHHHH SLDMPTLPDHSMSSCCDGNGFCTGDCSHCLTISVNLSLPIGNVWPFSYGPEEAMALPLPH CCCCCCCCCCCCHHCCCCCCEECCCCCCEEEEEEEEECCCCCCCCCCCCCCCCEECCCCC FHSIAPTAAFKPPQGLNAHLKNTQLIQFL CCCCCCCCCCCCCCCCCCCCCCCEEEECC >Mature Secondary Structure SLMLRKPLLVMITLLALVGQALVGNGHAMVMQPDMAKPMDSAVMAQHPEMADTTHDCCD CCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHCCCCCCCCHHHHHH SLDMPTLPDHSMSSCCDGNGFCTGDCSHCLTISVNLSLPIGNVWPFSYGPEEAMALPLPH CCCCCCCCCCCCHHCCCCCCEECCCCCCEEEEEEEEECCCCCCCCCCCCCCCCEECCCCC FHSIAPTAAFKPPQGLNAHLKNTQLIQFL CCCCCCCCCCCCCCCCCCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA