Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is yhhL [C]

Identifier: 119776602

GI number: 119776602

Start: 4100173

End: 4100466

Strand: Direct

Name: yhhL [C]

Synonym: Sama_3470

Alternate gene names: 119776602

Gene position: 4100173-4100466 (Clockwise)

Preceding gene: 119776601

Following gene: 119776604

Centisome position: 95.22

GC content: 52.04

Gene sequence:

>294_bases
ATGAAGTGGCTGATCATGTTTGGAAAGCTCGCCACCCTCGGTGCCTGGGTAATGATGGGCTACAACCTGCTTACCCCGTT
CGATGGCAACATAGGTACCCTACTCAAGATTTTACTGGGGGTCACCGTGGTGATGCACAGCTTCCAGTTGGGGGTGTTTC
ATTTACTGTTCAAAAAGTTGCTGCCACTGAAGGCGAGCGATTATTTGCAGGTGTTTGCCTTTGGCGTATTTGCACTGCTG
GAGTACCGCGCCATAGCTTTGGCTAAGTTTGAAGCCGAGGCCCGCAAGGGCTAG

Upstream 100 bases:

>100_bases
CTGCCATGCCGCTGCCACCAGGCTTTACAGAGCTTAAACACAAGACAGCCGGCCAGGTCTGCTATCGCTTATTGCAATTC
AACCAGGGAGAGCAAGCATA

Downstream 100 bases:

>100_bases
AGCCACCCAACAAAAAAGCCCCGTAATCGGGGCTTTTTGCTATCGGGTTATTCCTGGCGAAAGTGCCACTATCGCAAGGG
CTGTTATCAACTCTTTGGAT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 97; Mature: 97

Protein sequence:

>97_residues
MKWLIMFGKLATLGAWVMMGYNLLTPFDGNIGTLLKILLGVTVVMHSFQLGVFHLLFKKLLPLKASDYLQVFAFGVFALL
EYRAIALAKFEAEARKG

Sequences:

>Translated_97_residues
MKWLIMFGKLATLGAWVMMGYNLLTPFDGNIGTLLKILLGVTVVMHSFQLGVFHLLFKKLLPLKASDYLQVFAFGVFALL
EYRAIALAKFEAEARKG
>Mature_97_residues
MKWLIMFGKLATLGAWVMMGYNLLTPFDGNIGTLLKILLGVTVVMHSFQLGVFHLLFKKLLPLKASDYLQVFAFGVFALL
EYRAIALAKFEAEARKG

Specific function: Unknown

COG id: COG3776

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10868; Mature: 10868

Theoretical pI: Translated: 10.35; Mature: 10.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKWLIMFGKLATLGAWVMMGYNLLTPFDGNIGTLLKILLGVTVVMHSFQLGVFHLLFKKL
CCHHHHHHHHHHHHHHHHHCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LPLKASDYLQVFAFGVFALLEYRAIALAKFEAEARKG
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKWLIMFGKLATLGAWVMMGYNLLTPFDGNIGTLLKILLGVTVVMHSFQLGVFHLLFKKL
CCHHHHHHHHHHHHHHHHHCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LPLKASDYLQVFAFGVFALLEYRAIALAKFEAEARKG
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA