| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is fct [H]
Identifier: 119776544
GI number: 119776544
Start: 4036983
End: 4039058
Strand: Direct
Name: fct [H]
Synonym: Sama_3412
Alternate gene names: 119776544
Gene position: 4036983-4039058 (Clockwise)
Preceding gene: 119776543
Following gene: 119776545
Centisome position: 93.75
GC content: 54.91
Gene sequence:
>2076_bases ATGTCCAGCTCCAGCCTCTTCAGATTGACCGGGCTGTCTGTGGCACTGATGTCAGCCATGGCTGCCCATGGTCAGGACAC TTCTGACATCAGTATCGAAAGGATGATCGTCACCACTAAAGCCACTGCACCTTCCACCACCAAGGGCGACTTCAGCTTGC TGAAGGCACCGCAGAACATTCAGATCTTGTCCAAAAATTTCCTTGATGATCAGGGTGTCGTGCATTTGGAAGACGCGTTG AAGAACGTGGCCGGGATACAACCCGGTGGTTACTATCAGGGTTACGACTACTTCCGAATCCGGGGTTTCGATGCCTCGCA AAACATCTATCTCGACGGTCTGCGCCTGAATGACAATGGCCTGGGTGCCAATGTGGAGCAGTCGAATCTCGAAACCCTTG AGGTGATGAAAGGGCCTTCCTCCACTCTTTACGGTGCAGGTGCCATCTCGGGTATGGTGAACCTGGTGACCAAACGGCCA ACCCAAACCGACATGGGCAGCGTAAGCTTGCAGGGTGGCAATCTGGGCTACCGTGAGCTGGATGCCGACATTAACCGCGT ACTGAGCGACGATGGTGACATCTTCGGCCGTGTTGGTCTGGCGTACCGAGAAGCGGCCAACAGCGTGGACCATATTGACG GACAACATCGCTTCTTTATCGCGCCGTCGCTCACCTTTAATCTGGGTGAAGACGCTGCTCTGACCCTGCTCACCAGCTAC ACAAAAGACGATAATCAGTTAGGCATGCCACTGCCTGCCATGGGAACTGTGCTGCCGTCACCGCTGGGTGAGCTGGATAA GGATCTCTTTTACGGCAACATCAAAGATCCCGGTGCCATCAACGACGAAACCTATCGTCTGGGTTACGAGCTGCGCTGGG ACCTGACCGACAACTTGCAGCTGCGTCAGAATGTCCGATTCCAGGATGCCTCCAGCGATTGGCACAATCTCTACTATCCC AGCAGTTACGATGCCGACACCGGCGATTTGAACCTGTACAAATTCAGCTATCGCACCCAGTGGAAAACCTGGGCACTGGA CACCGGACTCAATGGCCGCGTTATGCTGGGTGAAACCGAGCACCTGTTTACCGCAGGGGTGGATATCTTTATGTCGGATC TCTACACCAGCGGCGCCCTGGGCAGTGATTTCCCCACCATCAATCTCTACCAGCCGGATTACAGTGTCTTCCCTGATACC GAGGTCAATCAGTTCGGCCCCGAAAGCAAGGTTGAGAATCGTATTCTGGGTCTGTACGCCCAGGATCAAATTAATCTGGG AGAGCACTGGAGCTTTACACTGGGTGCCCGTTTCGATCGCTACAAGCAAGCCTACGTGGAAGACTACGAAACCAAACTGA GCCCGAGAGCCGGTGTCAGCTACGCTTTCAACGACGATTGGGTGGCCTTTGCCAGCTATTCTGAAGCCTTCACCCCCCAG TCCTATGTGGACAGTAATGGCAAGGTTCTCGACCCGGAAGAAGGCCAGCAGTGGGAACTGGGCCTTAAGAGCCGCGCCTT TAACGGTGACCTGAATGCCACTGTGTCCCTCTATGAGCTGACCAAAAAGAACATAGCGCTGGCCAATGTGGATGCCGGTG GCAACTTTACCTACTCCGCATCCGGCGAGCTGCAAAGTCGTGGCATAGAGCTGGATTTGCAGTGGCTGCTGACACAGGAT CTGCAGCTGATTGGCCACGGCGCATACACCCATGCCGTCGATACCGAGCACGACAAGTGGGTCGCCAATGTACCCCGTTA TGCCCTGGGTGGCTGGCTAAAATACAACTTGGATGACATGCTCGATGGTCTGAGCGTGGCGGCCGGTGTCAATCACTACG GCAAGCAGCAAGGCAACGTACAGGCGGTACTGACTGACAGCAGCGAAGGCGACTTTTACCTGCCAGCCTACACTCTGGTT GACCTGAACCTGACCTACAGCTGGGACCAGTACGATCTGCGCTTTATCGTCAACAACCTGACCGATGAAGACTACTTCTC TGGCTCCGACAGTCTGCTGCGGGTACTGCCGGGCAGCGGCCGTGAAGTGAAACTCAGCTTCACTGCCAACTGGTAA
Upstream 100 bases:
>100_bases TCTGTGTCGCAATCTTTTTGCATACACTCAATTTTTAATGATAATTATTTTTATTTAGTTTAGTATCCTTGCGAATTTAC CACTCGAGGATACTAAAATC
Downstream 100 bases:
>100_bases TCCCATGCGCAGATTACTGTGGAAATGGCACGGATTGGCAGGGCTGATTACCGCCCTGCCGCTCTTTGTTATCGCACTGA CGGGCAGCTTGCTGGTGTTT
Product: ferrichrome iron receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 691; Mature: 690
Protein sequence:
>691_residues MSSSSLFRLTGLSVALMSAMAAHGQDTSDISIERMIVTTKATAPSTTKGDFSLLKAPQNIQILSKNFLDDQGVVHLEDAL KNVAGIQPGGYYQGYDYFRIRGFDASQNIYLDGLRLNDNGLGANVEQSNLETLEVMKGPSSTLYGAGAISGMVNLVTKRP TQTDMGSVSLQGGNLGYRELDADINRVLSDDGDIFGRVGLAYREAANSVDHIDGQHRFFIAPSLTFNLGEDAALTLLTSY TKDDNQLGMPLPAMGTVLPSPLGELDKDLFYGNIKDPGAINDETYRLGYELRWDLTDNLQLRQNVRFQDASSDWHNLYYP SSYDADTGDLNLYKFSYRTQWKTWALDTGLNGRVMLGETEHLFTAGVDIFMSDLYTSGALGSDFPTINLYQPDYSVFPDT EVNQFGPESKVENRILGLYAQDQINLGEHWSFTLGARFDRYKQAYVEDYETKLSPRAGVSYAFNDDWVAFASYSEAFTPQ SYVDSNGKVLDPEEGQQWELGLKSRAFNGDLNATVSLYELTKKNIALANVDAGGNFTYSASGELQSRGIELDLQWLLTQD LQLIGHGAYTHAVDTEHDKWVANVPRYALGGWLKYNLDDMLDGLSVAAGVNHYGKQQGNVQAVLTDSSEGDFYLPAYTLV DLNLTYSWDQYDLRFIVNNLTDEDYFSGSDSLLRVLPGSGREVKLSFTANW
Sequences:
>Translated_691_residues MSSSSLFRLTGLSVALMSAMAAHGQDTSDISIERMIVTTKATAPSTTKGDFSLLKAPQNIQILSKNFLDDQGVVHLEDAL KNVAGIQPGGYYQGYDYFRIRGFDASQNIYLDGLRLNDNGLGANVEQSNLETLEVMKGPSSTLYGAGAISGMVNLVTKRP TQTDMGSVSLQGGNLGYRELDADINRVLSDDGDIFGRVGLAYREAANSVDHIDGQHRFFIAPSLTFNLGEDAALTLLTSY TKDDNQLGMPLPAMGTVLPSPLGELDKDLFYGNIKDPGAINDETYRLGYELRWDLTDNLQLRQNVRFQDASSDWHNLYYP SSYDADTGDLNLYKFSYRTQWKTWALDTGLNGRVMLGETEHLFTAGVDIFMSDLYTSGALGSDFPTINLYQPDYSVFPDT EVNQFGPESKVENRILGLYAQDQINLGEHWSFTLGARFDRYKQAYVEDYETKLSPRAGVSYAFNDDWVAFASYSEAFTPQ SYVDSNGKVLDPEEGQQWELGLKSRAFNGDLNATVSLYELTKKNIALANVDAGGNFTYSASGELQSRGIELDLQWLLTQD LQLIGHGAYTHAVDTEHDKWVANVPRYALGGWLKYNLDDMLDGLSVAAGVNHYGKQQGNVQAVLTDSSEGDFYLPAYTLV DLNLTYSWDQYDLRFIVNNLTDEDYFSGSDSLLRVLPGSGREVKLSFTANW >Mature_690_residues SSSSLFRLTGLSVALMSAMAAHGQDTSDISIERMIVTTKATAPSTTKGDFSLLKAPQNIQILSKNFLDDQGVVHLEDALK NVAGIQPGGYYQGYDYFRIRGFDASQNIYLDGLRLNDNGLGANVEQSNLETLEVMKGPSSTLYGAGAISGMVNLVTKRPT QTDMGSVSLQGGNLGYRELDADINRVLSDDGDIFGRVGLAYREAANSVDHIDGQHRFFIAPSLTFNLGEDAALTLLTSYT KDDNQLGMPLPAMGTVLPSPLGELDKDLFYGNIKDPGAINDETYRLGYELRWDLTDNLQLRQNVRFQDASSDWHNLYYPS SYDADTGDLNLYKFSYRTQWKTWALDTGLNGRVMLGETEHLFTAGVDIFMSDLYTSGALGSDFPTINLYQPDYSVFPDTE VNQFGPESKVENRILGLYAQDQINLGEHWSFTLGARFDRYKQAYVEDYETKLSPRAGVSYAFNDDWVAFASYSEAFTPQS YVDSNGKVLDPEEGQQWELGLKSRAFNGDLNATVSLYELTKKNIALANVDAGGNFTYSASGELQSRGIELDLQWLLTQDL QLIGHGAYTHAVDTEHDKWVANVPRYALGGWLKYNLDDMLDGLSVAAGVNHYGKQQGNVQAVLTDSSEGDFYLPAYTLVD LNLTYSWDQYDLRFIVNNLTDEDYFSGSDSLLRVLPGSGREVKLSFTANW
Specific function: Involved in the initial step of iron uptake by binding chrysobactin, an iron chelatin siderophore that allows the bacteria to extract iron from the environment [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1786344, Length=756, Percent_Identity=27.7777777777778, Blast_Score=208, Evalue=1e-54, Organism=Escherichia coli, GI1787024, Length=775, Percent_Identity=24.6451612903226, Blast_Score=149, Evalue=4e-37, Organism=Escherichia coli, GI1787344, Length=283, Percent_Identity=30.3886925795053, Blast_Score=100, Evalue=4e-22, Organism=Escherichia coli, GI1788478, Length=147, Percent_Identity=31.9727891156463, Blast_Score=69, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 76605; Mature: 76473
Theoretical pI: Translated: 4.26; Mature: 4.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSSSLFRLTGLSVALMSAMAAHGQDTSDISIERMIVTTKATAPSTTKGDFSLLKAPQNI CCCCCEEEEHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCCCCCHHEEECCCCE QILSKNFLDDQGVVHLEDALKNVAGIQPGGYYQGYDYFRIRGFDASQNIYLDGLRLNDNG EEHHHHCCCCCCEEEHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCEEEEEEEECCCC LGANVEQSNLETLEVMKGPSSTLYGAGAISGMVNLVTKRPTQTDMGSVSLQGGNLGYREL CCCCCCCCCCCEEEEECCCCCCEECCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHH DADINRVLSDDGDIFGRVGLAYREAANSVDHIDGQHRFFIAPSLTFNLGEDAALTLLTSY HHHHHHHHCCCCCEEEHHHHHHHHHCCCHHCCCCCEEEEEECEEEEECCCCCEEEEEEEC TKDDNQLGMPLPAMGTVLPSPLGELDKDLFYGNIKDPGAINDETYRLGYELRWDLTDNLQ CCCCCCCCCCCCHHHHHCCCCHHHHHHHHEECCCCCCCCCCCCEEEEEEEEEECCCCCCE LRQNVRFQDASSDWHNLYYPSSYDADTGDLNLYKFSYRTQWKTWALDTGLNGRVMLGETE ECCCCCEECCCCCCCEEECCCCCCCCCCCEEEEEEEEECCEEEEEEECCCCCEEEECCCC HLFTAGVDIFMSDLYTSGALGSDFPTINLYQPDYSVFPDTEVNQFGPESKVENRILGLYA HHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCHHCCCHHHHCCEEEEEEE QDQINLGEHWSFTLGARFDRYKQAYVEDYETKLSPRAGVSYAFNDDWVAFASYSEAFTPQ CCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEECCCCCCCCH SYVDSNGKVLDPEEGQQWELGLKSRAFNGDLNATVSLYELTKKNIALANVDAGGNFTYSA HHHCCCCCEECCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCEEEEC SGELQSRGIELDLQWLLTQDLQLIGHGAYTHAVDTEHDKWVANVPRYALGGWLKYNLDDM CCCHHHCCEEEEEEEHHHHHHHHHCCCCEEECCCCCCCCHHHCCCCHHHCCEEEECHHHH LDGLSVAAGVNHYGKQQGNVQAVLTDSSEGDFYLPAYTLVDLNLTYSWDQYDLRFIVNNL HHHHHHHHCCHHHCCCCCCEEEEEEECCCCCEEEEEEEEEEEEEEEECCCCEEEEEEECC TDEDYFSGSDSLLRVLPGSGREVKLSFTANW CCCCCCCCCCCEEEECCCCCCEEEEEEEECC >Mature Secondary Structure SSSSLFRLTGLSVALMSAMAAHGQDTSDISIERMIVTTKATAPSTTKGDFSLLKAPQNI CCCCEEEEHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCCCCCHHEEECCCCE QILSKNFLDDQGVVHLEDALKNVAGIQPGGYYQGYDYFRIRGFDASQNIYLDGLRLNDNG EEHHHHCCCCCCEEEHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCEEEEEEEECCCC LGANVEQSNLETLEVMKGPSSTLYGAGAISGMVNLVTKRPTQTDMGSVSLQGGNLGYREL CCCCCCCCCCCEEEEECCCCCCEECCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHH DADINRVLSDDGDIFGRVGLAYREAANSVDHIDGQHRFFIAPSLTFNLGEDAALTLLTSY HHHHHHHHCCCCCEEEHHHHHHHHHCCCHHCCCCCEEEEEECEEEEECCCCCEEEEEEEC TKDDNQLGMPLPAMGTVLPSPLGELDKDLFYGNIKDPGAINDETYRLGYELRWDLTDNLQ CCCCCCCCCCCCHHHHHCCCCHHHHHHHHEECCCCCCCCCCCCEEEEEEEEEECCCCCCE LRQNVRFQDASSDWHNLYYPSSYDADTGDLNLYKFSYRTQWKTWALDTGLNGRVMLGETE ECCCCCEECCCCCCCEEECCCCCCCCCCCEEEEEEEEECCEEEEEEECCCCCEEEECCCC HLFTAGVDIFMSDLYTSGALGSDFPTINLYQPDYSVFPDTEVNQFGPESKVENRILGLYA HHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCHHCCCHHHHCCEEEEEEE QDQINLGEHWSFTLGARFDRYKQAYVEDYETKLSPRAGVSYAFNDDWVAFASYSEAFTPQ CCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEECCCCCCCCH SYVDSNGKVLDPEEGQQWELGLKSRAFNGDLNATVSLYELTKKNIALANVDAGGNFTYSA HHHCCCCCEECCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCEEEEC SGELQSRGIELDLQWLLTQDLQLIGHGAYTHAVDTEHDKWVANVPRYALGGWLKYNLDDM CCCHHHCCEEEEEEEHHHHHHHHHCCCCEEECCCCCCCCHHHCCCCHHHCCEEEECHHHH LDGLSVAAGVNHYGKQQGNVQAVLTDSSEGDFYLPAYTLVDLNLTYSWDQYDLRFIVNNL HHHHHHHHCCHHHCCCCCCEEEEEEECCCCCEEEEEEEEEEEEEEEECCCCEEEEEEECC TDEDYFSGSDSLLRVLPGSGREVKLSFTANW CCCCCCCCCCCEEEECCCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8576065 [H]