Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

Click here to switch to the map view.

The map label for this gene is 119776543

Identifier: 119776543

GI number: 119776543

Start: 4036540

End: 4036869

Strand: Direct

Name: 119776543

Synonym: Sama_3411

Alternate gene names: NA

Gene position: 4036540-4036869 (Clockwise)

Preceding gene: 119776542

Following gene: 119776544

Centisome position: 93.74

GC content: 59.09

Gene sequence:

>330_bases
ATGATGGCTCTGGCGCTGTTTTTTCTGAGTTTTGGCAGTTTCGGCTTGCTGGCTGCCTCCCAGTTTGGCCATCACAGAAC
AATTTTCGGCGTGCCACCATCGGATACCAGGGCCAGGTGGCTGCAAGTGGCAGGGCTTGGCATGCTGGCGTTGGGAATGG
CCTTGGCCATCGCCCTGGATGGCGGCTATGGGCTGATTCTGTTAATTACCCTGATGGCGCCCGCAGCTCTGGGACAAAGT
GTGCTGCTTAACCTCAAACCCCGGGCGCTGAGGCTCTCGTTCTGGCTCGCACCGGCCGCACTCTTACTGCTGGTTCTTGC
CGTCCGCTGA

Upstream 100 bases:

>100_bases
CCGACCTGCTTTTTATTGTACTTGGCATCACCTGCCTCTTTGCACGTCGTAAGTTCGTTGTGCCTGTCCGGGCAACAATG
CCAGCAATGGAGCGCACCGC

Downstream 100 bases:

>100_bases
ACACTGACAAGGATCTGTGTCGCAATCTTTTTGCATACACTCAATTTTTAATGATAATTATTTTTATTTAGTTTAGTATC
CTTGCGAATTTACCACTCGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 109; Mature: 109

Protein sequence:

>109_residues
MMALALFFLSFGSFGLLAASQFGHHRTIFGVPPSDTRARWLQVAGLGMLALGMALAIALDGGYGLILLITLMAPAALGQS
VLLNLKPRALRLSFWLAPAALLLLVLAVR

Sequences:

>Translated_109_residues
MMALALFFLSFGSFGLLAASQFGHHRTIFGVPPSDTRARWLQVAGLGMLALGMALAIALDGGYGLILLITLMAPAALGQS
VLLNLKPRALRLSFWLAPAALLLLVLAVR
>Mature_109_residues
MMALALFFLSFGSFGLLAASQFGHHRTIFGVPPSDTRARWLQVAGLGMLALGMALAIALDGGYGLILLITLMAPAALGQS
VLLNLKPRALRLSFWLAPAALLLLVLAVR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11530; Mature: 11530

Theoretical pI: Translated: 12.21; Mature: 12.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMALALFFLSFGSFGLLAASQFGHHRTIFGVPPSDTRARWLQVAGLGMLALGMALAIALD
CHHHHHHHHHHCCHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
GGYGLILLITLMAPAALGQSVLLNLKPRALRLSFWLAPAALLLLVLAVR
CCCHHHHHHHHHHHHHCCHHHEEECCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MMALALFFLSFGSFGLLAASQFGHHRTIFGVPPSDTRARWLQVAGLGMLALGMALAIALD
CHHHHHHHHHHCCHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
GGYGLILLITLMAPAALGQSVLLNLKPRALRLSFWLAPAALLLLVLAVR
CCCHHHHHHHHHHHHHCCHHHEEECCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA