BacMap

Definition	Shewanella amazonensis SB2B chromosome, complete genome.
Accession	NC_008700
Length	4,306,142

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The map label for this gene is fabG [H]

Identifier: 119776525

GI number: 119776525

Start: 4021070

End: 4021795

Strand: Direct

Name: fabG [H]

Synonym: Sama_3393

Alternate gene names: 119776525

Gene position: 4021070-4021795 (Clockwise)

Preceding gene: 119776524

Following gene: 119776526

Centisome position: 93.38

GC content: 59.23

Gene sequence:

>726_bases
ATGACTAAAAGAGTCCTGGTGACAGGTTCCAGCCGCGGCATTGGCAAAGCCATTGCCCTGCGCCTTGCATCTCAAGGCTA
TGATGTTGCAGTGCATTACCACTCAAACCTCACTGCTGCCGAAGCCACTGCCAGCGAAATTGCCGACCTCGGCGTGAAGG
TGAGCCTGCTGAAATTTGATGTGGCCGACCGCGCTGCGGTGCGTGCCGCCATCGAGGCCGATATCGAGGCCAACGGCGCT
TACTACGGCGTGGTGCTCAATGCCGGCATCAACCGCGACACCGCCTTCCCGGCCATGACCGATGATGATTGGGACAGCGT
AATTCACACCAACCTCGACGGCTTTTACAACGTGGTGCAGCCCACTGTGATGCCGATGATCCAAAGCCGCAAGGGCGGAC
GCATCATCACGCTGGCATCGGTATCCGGCATTGCCGGTAACCGTGGTCAGGTAAACTACAGCGCCTCCAAGGCCGGGCTT
ATCGGCGCCACCAAGGCGCTGTCGCTGGAGCTGGCCAAGCGCAAGATCACCGTTAACTGCATCGCCCCCGGCCTGATTGA
AACCGACATGGTGAGCGAATTCCCCAGCGAAATGGTCGACCAGCTGGTGCCGATGCGCCGCATGGGCAAGCCGGAAGAAA
TCGCTGCACTGGCGGGCTTTTTGATGTCCGATGATGCCGCCTACATTACCCGTCAGGTGATTTCGGTGAACGGAGGCATG
CTGTGA

Upstream 100 bases:

>100_bases
TGCCGAGGCCAACGTCAACGTGTTCCAGCCTCAGGACACAGACGCCTATATTCGTGAGAGCCAAGGCTCATCTACCCGTA
TCTAGCACAGGAGCATAATA

Downstream 100 bases:

>100_bases
GCCGCCGGGTTGTGGTCACAGGCTTTGGCGGCATCAGCAGCCTTGGCCATGACTGGTCATCGATTGCGGCCAGCCTTAAG
GCCATGCAAAACAAAGTGGT

Product: 3-ketoacyl-(acyl-carrier-protein) reductase

Products: NA

Alternate protein names: 3-ketoacyl-acyl carrier protein reductase [H]

Number of amino acids: Translated: 241; Mature: 240

Protein sequence:

>241_residues
MTKRVLVTGSSRGIGKAIALRLASQGYDVAVHYHSNLTAAEATASEIADLGVKVSLLKFDVADRAAVRAAIEADIEANGA
YYGVVLNAGINRDTAFPAMTDDDWDSVIHTNLDGFYNVVQPTVMPMIQSRKGGRIITLASVSGIAGNRGQVNYSASKAGL
IGATKALSLELAKRKITVNCIAPGLIETDMVSEFPSEMVDQLVPMRRMGKPEEIAALAGFLMSDDAAYITRQVISVNGGM
L

Sequences:

>Translated_241_residues
MTKRVLVTGSSRGIGKAIALRLASQGYDVAVHYHSNLTAAEATASEIADLGVKVSLLKFDVADRAAVRAAIEADIEANGA
YYGVVLNAGINRDTAFPAMTDDDWDSVIHTNLDGFYNVVQPTVMPMIQSRKGGRIITLASVSGIAGNRGQVNYSASKAGL
IGATKALSLELAKRKITVNCIAPGLIETDMVSEFPSEMVDQLVPMRRMGKPEEIAALAGFLMSDDAAYITRQVISVNGGM
L
>Mature_240_residues
TKRVLVTGSSRGIGKAIALRLASQGYDVAVHYHSNLTAAEATASEIADLGVKVSLLKFDVADRAAVRAAIEADIEANGAY
YGVVLNAGINRDTAFPAMTDDDWDSVIHTNLDGFYNVVQPTVMPMIQSRKGGRIITLASVSGIAGNRGQVNYSASKAGLI
GATKALSLELAKRKITVNCIAPGLIETDMVSEFPSEMVDQLVPMRRMGKPEEIAALAGFLMSDDAAYITRQVISVNGGML

Specific function: Fatty acid biosynthesis pathway; first reduction step. [C]

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI15277342, Length=247, Percent_Identity=36.0323886639676, Blast_Score=146, Evalue=2e-35,
Organism=Homo sapiens, GI40254992, Length=241, Percent_Identity=38.5892116182573, Blast_Score=144, Evalue=5e-35,
Organism=Homo sapiens, GI32483357, Length=245, Percent_Identity=32.2448979591837, Blast_Score=117, Evalue=1e-26,
Organism=Homo sapiens, GI4504505, Length=245, Percent_Identity=32.6530612244898, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI126723750, Length=246, Percent_Identity=29.2682926829268, Blast_Score=95, Evalue=7e-20,
Organism=Homo sapiens, GI5031737, Length=242, Percent_Identity=30.1652892561983, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI19923817, Length=246, Percent_Identity=29.6747967479675, Blast_Score=91, Evalue=8e-19,
Organism=Homo sapiens, GI66933014, Length=149, Percent_Identity=30.2013422818792, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI4758504, Length=250, Percent_Identity=30, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI4503301, Length=207, Percent_Identity=29.4685990338164, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI33667109, Length=189, Percent_Identity=31.2169312169312, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI59889578, Length=190, Percent_Identity=30.5263157894737, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI210032110, Length=191, Percent_Identity=27.7486910994764, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI83715985, Length=252, Percent_Identity=27.7777777777778, Blast_Score=65, Evalue=7e-11,
Organism=Homo sapiens, GI31542939, Length=204, Percent_Identity=28.4313725490196, Blast_Score=65, Evalue=7e-11,
Organism=Escherichia coli, GI1787335, Length=242, Percent_Identity=42.9752066115703, Blast_Score=168, Evalue=3e-43,
Organism=Escherichia coli, GI1788459, Length=244, Percent_Identity=34.8360655737705, Blast_Score=138, Evalue=4e-34,
Organism=Escherichia coli, GI87082100, Length=249, Percent_Identity=35.3413654618474, Blast_Score=134, Evalue=6e-33,
Organism=Escherichia coli, GI2367175, Length=242, Percent_Identity=37.603305785124, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1790717, Length=246, Percent_Identity=30.0813008130081, Blast_Score=108, Evalue=2e-25,
Organism=Escherichia coli, GI1789208, Length=245, Percent_Identity=29.3877551020408, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI2367365, Length=242, Percent_Identity=32.6446280991736, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1789378, Length=254, Percent_Identity=29.5275590551181, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI87082160, Length=245, Percent_Identity=30.6122448979592, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1786812, Length=250, Percent_Identity=31.6, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI1787905, Length=242, Percent_Identity=31.404958677686, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1789057, Length=257, Percent_Identity=27.2373540856031, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1786701, Length=188, Percent_Identity=28.7234042553192, Blast_Score=64, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17555706, Length=243, Percent_Identity=35.3909465020576, Blast_Score=134, Evalue=4e-32,
Organism=Caenorhabditis elegans, GI25147288, Length=240, Percent_Identity=36.6666666666667, Blast_Score=128, Evalue=2e-30,
Organism=Caenorhabditis elegans, GI17560676, Length=259, Percent_Identity=30.1158301158301, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17568967, Length=237, Percent_Identity=32.4894514767932, Blast_Score=97, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI17561402, Length=250, Percent_Identity=31.6, Blast_Score=97, Evalue=6e-21,
Organism=Caenorhabditis elegans, GI115534694, Length=244, Percent_Identity=29.5081967213115, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17564282, Length=191, Percent_Identity=29.8429319371728, Blast_Score=81, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17561272, Length=234, Percent_Identity=31.1965811965812, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17536025, Length=247, Percent_Identity=29.9595141700405, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17538182, Length=251, Percent_Identity=30.6772908366534, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17536651, Length=247, Percent_Identity=29.5546558704453, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17562910, Length=266, Percent_Identity=29.3233082706767, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17560150, Length=256, Percent_Identity=27.734375, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI71994600, Length=248, Percent_Identity=24.1935483870968, Blast_Score=70, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17562904, Length=259, Percent_Identity=30.1158301158301, Blast_Score=70, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17562906, Length=260, Percent_Identity=27.6923076923077, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI71994604, Length=248, Percent_Identity=25.4032258064516, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17563726, Length=260, Percent_Identity=28.0769230769231, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17562990, Length=258, Percent_Identity=26.3565891472868, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI72000259, Length=257, Percent_Identity=27.2373540856031, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI193204405, Length=260, Percent_Identity=29.6153846153846, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17508651, Length=247, Percent_Identity=25.9109311740891, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17559104, Length=258, Percent_Identity=27.906976744186, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17562908, Length=258, Percent_Identity=28.2945736434109, Blast_Score=64, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=245, Percent_Identity=32.6530612244898, Blast_Score=103, Evalue=3e-23,
Organism=Saccharomyces cerevisiae, GI6324126, Length=186, Percent_Identity=27.4193548387097, Blast_Score=69, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6323882, Length=194, Percent_Identity=32.4742268041237, Blast_Score=64, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24639444, Length=243, Percent_Identity=37.8600823045267, Blast_Score=134, Evalue=4e-32,
Organism=Drosophila melanogaster, GI21355319, Length=244, Percent_Identity=33.6065573770492, Blast_Score=112, Evalue=3e-25,
Organism=Drosophila melanogaster, GI24644339, Length=248, Percent_Identity=29.0322580645161, Blast_Score=97, Evalue=8e-21,
Organism=Drosophila melanogaster, GI24643142, Length=242, Percent_Identity=29.3388429752066, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI18859837, Length=236, Percent_Identity=32.6271186440678, Blast_Score=92, Evalue=4e-19,
Organism=Drosophila melanogaster, GI28571526, Length=247, Percent_Identity=29.5546558704453, Blast_Score=91, Evalue=7e-19,
Organism=Drosophila melanogaster, GI23397609, Length=250, Percent_Identity=30.8, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI17737361, Length=254, Percent_Identity=30.3149606299213, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI21357041, Length=247, Percent_Identity=28.3400809716599, Blast_Score=85, Evalue=3e-17,
Organism=Drosophila melanogaster, GI161076933, Length=190, Percent_Identity=27.8947368421053, Blast_Score=64, Evalue=8e-11,
Organism=Drosophila melanogaster, GI24584748, Length=190, Percent_Identity=27.8947368421053, Blast_Score=64, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR011285
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: =1.1.1.100 [H]

Molecular weight: Translated: 25535; Mature: 25403

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKRVLVTGSSRGIGKAIALRLASQGYDVAVHYHSNLTAAEATASEIADLGVKVSLLKFD
CCCEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCEEEEEEEEC
VADRAAVRAAIEADIEANGAYYGVVLNAGINRDTAFPAMTDDDWDSVIHTNLDGFYNVVQ
CHHHHHHHHHHHCCEECCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHH
PTVMPMIQSRKGGRIITLASVSGIAGNRGQVNYSASKAGLIGATKALSLELAKRKITVNC
HHHHHHHHCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCEEHHHHHHHEEHHHEEEEEE
IAPGLIETDMVSEFPSEMVDQLVPMRRMGKPEEIAALAGFLMSDDAAYITRQVISVNGGM
ECCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCC
L
C
>Mature Secondary Structure 
TKRVLVTGSSRGIGKAIALRLASQGYDVAVHYHSNLTAAEATASEIADLGVKVSLLKFD
CCEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCEEEEEEEEC
VADRAAVRAAIEADIEANGAYYGVVLNAGINRDTAFPAMTDDDWDSVIHTNLDGFYNVVQ
CHHHHHHHHHHHCCEECCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHH
PTVMPMIQSRKGGRIITLASVSGIAGNRGQVNYSASKAGLIGATKALSLELAKRKITVNC
HHHHHHHHCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCEEHHHHHHHEEHHHEEEEEE
IAPGLIETDMVSEFPSEMVDQLVPMRRMGKPEEIAALAGFLMSDDAAYITRQVISVNGGM
ECCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCC
L
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9020051 [H]