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The map label for this gene is cph2 [H]

Identifier: 119776418

GI number: 119776418

Start: 3903986

End: 3905773

Strand: Reverse

Name: cph2 [H]

Synonym: Sama_3286

Alternate gene names: 119776418

Gene position: 3905773-3903986 (Counterclockwise)

Preceding gene: 119776419

Following gene: 119776416

Centisome position: 90.7

GC content: 53.58

Gene sequence:

>1788_bases
ATGATCATTGGCGTCAGCACCCTGTTGGCGCTCGTCACCATGCTTATCCAGTTTGTGTGGAACTATCTGGGCGCGGTGGA
CAACGCCAAGGCCGAAATTCGTGGTTACAGCGAGCTGATATTGCCGTCTATCGCCCAGGCGTTGTGGGATGCCGACAGGC
CACTGCTGAATGATCTGGTTTCGGCTGTGTCGCGTTTGCCCGCTGTCAGCTTTGTTGAATTGTCCAGCCTCGATGGTTTC
ACTGTGCGTTCGGATAATGCGGCCAATTCGGCGCAGACCAATCCCAACGCCCGGATTGAAATGCCTGTGCTGTTTGAACA
GCAGCCAATTGCCACACTGCGGGTGGTTCTCAGCAACAGCGAAATCTATCGGATGCTGTGGCAGCAGATGGTGTTTCTGG
TGCTGGGAAACGGTATTAAAACCCTGGTCATGGCATTCGTTATTCTATCGCTGCTCAAACATTTGGTGATTGGGCGTCTT
GCCCGTTTATCGGCCTTTGCCAATACCGTGAGTTTGGCCAATGGTGAACGTATCAATAAGCCCTTTTGGCCCGCCAATGA
ACAGGATGAAATAGGCTCGGTGGGCCGGGCACTTGAGGCCATGTACCACAGACTCAGATCAGATTTGGCGCTTATCCGCA
TGCAACAGCGCCAGTTGGCAAGAAGAGGCAGGGCACTGAGCCATACCGTGGCGGCACAGGACTCACAGCTGAACTGGCTT
GCCAATGCCAACAGTCTGCTGGCCAAGGTGAGTCTGCAGTTTCTGGCAGCCACCAGTGCGGATGCCAGCAAAGAGCTGAA
TCATTTCACCCGTGAGCTTGGTGCATTGTTGGGGGTTGAGCGGGTCAGTGTGCTCGAGTTTGTGAAGGGTAAGGCAACCT
ATCGCAGCTTTTGGTCATCGAATGAATCTGATGCGCCAGCCAGTGAGTTGGTGATTGATAACCTGCCACTTTTAAAACAA
AAGTTTGGCCACAGTCATACGCTGGTCATTGAGGATGTCGAAAGCCTGAAGGATTCGTCATCGCAGGAATACCGTTATAT
GAAGCAACTGGGGATTGTGTCGGTTGCCGGGTTTGCCATTGCAGATGGTGACACCCTGTTGGGGGTGCTGTTGGTGGCCA
ACCACCGCTTGCCTCTGAATTGGAGTCCGGAAAAAACGCACATACTGACCCAGTTTGCCTCGGCATTGAATGAGTTGTGG
CTTAGAGAGCGGCACGAAAACCGAATGTTTGAGCTGCAACAGGAACTGATGCGCGCCAACATGCACCTTGCCAGAGAGGC
AGTGACAGATCCCCTGACAGGCCTGACTAATCGTCGTCCCTTCACCGAACGCTTATCGATGCAGCTTGAACAGGGGGGCA
TACTCCTGATGGCAGATGTGGACTTTTTCAAAGGCTACAACGATACCTATGGCCACGTGGCCGGGGACGATGTGTTGAAA
AAGTTGGCAATGGAACTTCAAGCTTTGTTGTCAGACAGCGCCCTGCTGGCGCGTATTGGGGGAGAGGAGTTTGCCCTGAT
AGCTCCCGTGATGAGCGAAGCCGAACTTGAGGCATTATGCGACAGGCTGCTCACCCATGTCCGCAATCTGGCCATAGAGC
ACAGGGGATCGCATTTCGGCATAGTGACCCTGAGTTTGGGCGCGATAAACCTGGAGAATAGCAGCAATGTGCGCGATGCC
CTGAGTCAGGCCGATGCCAGTCTCTATTTAGCCAAGCAACAGGGGCGTAATCTTGCGGTTATCAATGGTCATGTCAGCCC
GGCGGCGAGACAGATGTCTTCTTCCTGA

Upstream 100 bases:

>100_bases
ACCCGGAAGTCTGTAAGCGCGTTTCCGGTGTCAATCTCATTAGAATAAAGGTGAACTGTTGAGCTCCAGAGTACATTCCA
TCAGCAGCAAGGTGACAGGT

Downstream 100 bases:

>100_bases
GAGTGTGTCGCTCTGCGGCGGGCTTTGATTTGGTGTAGCCATCCCGGAACTGATCAGATATAGCAATGGCATGAATAGCG
GAACTAGCGGGTGGCCGGTT

Product: GGDEF domain-containing protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 595; Mature: 595

Protein sequence:

>595_residues
MIIGVSTLLALVTMLIQFVWNYLGAVDNAKAEIRGYSELILPSIAQALWDADRPLLNDLVSAVSRLPAVSFVELSSLDGF
TVRSDNAANSAQTNPNARIEMPVLFEQQPIATLRVVLSNSEIYRMLWQQMVFLVLGNGIKTLVMAFVILSLLKHLVIGRL
ARLSAFANTVSLANGERINKPFWPANEQDEIGSVGRALEAMYHRLRSDLALIRMQQRQLARRGRALSHTVAAQDSQLNWL
ANANSLLAKVSLQFLAATSADASKELNHFTRELGALLGVERVSVLEFVKGKATYRSFWSSNESDAPASELVIDNLPLLKQ
KFGHSHTLVIEDVESLKDSSSQEYRYMKQLGIVSVAGFAIADGDTLLGVLLVANHRLPLNWSPEKTHILTQFASALNELW
LRERHENRMFELQQELMRANMHLAREAVTDPLTGLTNRRPFTERLSMQLEQGGILLMADVDFFKGYNDTYGHVAGDDVLK
KLAMELQALLSDSALLARIGGEEFALIAPVMSEAELEALCDRLLTHVRNLAIEHRGSHFGIVTLSLGAINLENSSNVRDA
LSQADASLYLAKQQGRNLAVINGHVSPAARQMSSS

Sequences:

>Translated_595_residues
MIIGVSTLLALVTMLIQFVWNYLGAVDNAKAEIRGYSELILPSIAQALWDADRPLLNDLVSAVSRLPAVSFVELSSLDGF
TVRSDNAANSAQTNPNARIEMPVLFEQQPIATLRVVLSNSEIYRMLWQQMVFLVLGNGIKTLVMAFVILSLLKHLVIGRL
ARLSAFANTVSLANGERINKPFWPANEQDEIGSVGRALEAMYHRLRSDLALIRMQQRQLARRGRALSHTVAAQDSQLNWL
ANANSLLAKVSLQFLAATSADASKELNHFTRELGALLGVERVSVLEFVKGKATYRSFWSSNESDAPASELVIDNLPLLKQ
KFGHSHTLVIEDVESLKDSSSQEYRYMKQLGIVSVAGFAIADGDTLLGVLLVANHRLPLNWSPEKTHILTQFASALNELW
LRERHENRMFELQQELMRANMHLAREAVTDPLTGLTNRRPFTERLSMQLEQGGILLMADVDFFKGYNDTYGHVAGDDVLK
KLAMELQALLSDSALLARIGGEEFALIAPVMSEAELEALCDRLLTHVRNLAIEHRGSHFGIVTLSLGAINLENSSNVRDA
LSQADASLYLAKQQGRNLAVINGHVSPAARQMSSS
>Mature_595_residues
MIIGVSTLLALVTMLIQFVWNYLGAVDNAKAEIRGYSELILPSIAQALWDADRPLLNDLVSAVSRLPAVSFVELSSLDGF
TVRSDNAANSAQTNPNARIEMPVLFEQQPIATLRVVLSNSEIYRMLWQQMVFLVLGNGIKTLVMAFVILSLLKHLVIGRL
ARLSAFANTVSLANGERINKPFWPANEQDEIGSVGRALEAMYHRLRSDLALIRMQQRQLARRGRALSHTVAAQDSQLNWL
ANANSLLAKVSLQFLAATSADASKELNHFTRELGALLGVERVSVLEFVKGKATYRSFWSSNESDAPASELVIDNLPLLKQ
KFGHSHTLVIEDVESLKDSSSQEYRYMKQLGIVSVAGFAIADGDTLLGVLLVANHRLPLNWSPEKTHILTQFASALNELW
LRERHENRMFELQQELMRANMHLAREAVTDPLTGLTNRRPFTERLSMQLEQGGILLMADVDFFKGYNDTYGHVAGDDVLK
KLAMELQALLSDSALLARIGGEEFALIAPVMSEAELEALCDRLLTHVRNLAIEHRGSHFGIVTLSLGAINLENSSNVRDA
LSQADASLYLAKQQGRNLAVINGHVSPAARQMSSS

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1788956, Length=176, Percent_Identity=36.3636363636364, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787262, Length=160, Percent_Identity=34.375, Blast_Score=87, Evalue=4e-18,
Organism=Escherichia coli, GI1787816, Length=165, Percent_Identity=35.1515151515151, Blast_Score=83, Evalue=6e-17,
Organism=Escherichia coli, GI87081881, Length=169, Percent_Identity=35.5029585798817, Blast_Score=82, Evalue=9e-17,
Organism=Escherichia coli, GI1787541, Length=169, Percent_Identity=33.1360946745562, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1788381, Length=167, Percent_Identity=32.3353293413174, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI87081977, Length=248, Percent_Identity=27.0161290322581, Blast_Score=77, Evalue=5e-15,
Organism=Escherichia coli, GI1787802, Length=163, Percent_Identity=30.0613496932515, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI145693134, Length=158, Percent_Identity=32.2784810126582, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1786584, Length=155, Percent_Identity=31.6129032258064, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787056, Length=155, Percent_Identity=34.1935483870968, Blast_Score=73, Evalue=6e-14,
Organism=Escherichia coli, GI87082007, Length=175, Percent_Identity=32.5714285714286, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI87081974, Length=164, Percent_Identity=29.2682926829268, Blast_Score=66, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 65739; Mature: 65739

Theoretical pI: Translated: 6.58; Mature: 6.58

Prosite motif: PS50885 HAMP ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIGVSTLLALVTMLIQFVWNYLGAVDNAKAEIRGYSELILPSIAQALWDADRPLLNDLV
CEECHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHH
SAVSRLPAVSFVELSSLDGFTVRSDNAANSAQTNPNARIEMPVLFEQQPIATLRVVLSNS
HHHHHCCCCCEEECCCCCCEEEECCCCCCCCCCCCCCEEEECEEECCCCHHHHHHHHCCC
EIYRMLWQQMVFLVLGNGIKTLVMAFVILSLLKHLVIGRLARLSAFANTVSLANGERINK
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PFWPANEQDEIGSVGRALEAMYHRLRSDLALIRMQQRQLARRGRALSHTVAAQDSQLNWL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCHHH
ANANSLLAKVSLQFLAATSADASKELNHFTRELGALLGVERVSVLEFVKGKATYRSFWSS
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCC
NESDAPASELVIDNLPLLKQKFGHSHTLVIEDVESLKDSSSQEYRYMKQLGIVSVAGFAI
CCCCCCHHHHHHCCCHHHHHHCCCCCEEEHHHHHHHCCCCHHHHHHHHHHCHHHCCCEEE
ADGDTLLGVLLVANHRLPLNWSPEKTHILTQFASALNELWLRERHENRMFELQQELMRAN
ECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MHLAREAVTDPLTGLTNRRPFTERLSMQLEQGGILLMADVDFFKGYNDTYGHVAGDDVLK
HHHHHHHHHCCHHCCCCCCCHHHHHHHHHHCCCEEEEECCHHHCCCCCCCCCCCHHHHHH
KLAMELQALLSDSALLARIGGEEFALIAPVMSEAELEALCDRLLTHVRNLAIEHRGSHFG
HHHHHHHHHHCCCHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
IVTLSLGAINLENSSNVRDALSQADASLYLAKQQGRNLAVINGHVSPAARQMSSS
EEEEEEEEEECCCCCHHHHHHHHHHHHEEEEHHCCCEEEEEECCCCHHHHHHCCC
>Mature Secondary Structure
MIIGVSTLLALVTMLIQFVWNYLGAVDNAKAEIRGYSELILPSIAQALWDADRPLLNDLV
CEECHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHH
SAVSRLPAVSFVELSSLDGFTVRSDNAANSAQTNPNARIEMPVLFEQQPIATLRVVLSNS
HHHHHCCCCCEEECCCCCCEEEECCCCCCCCCCCCCCEEEECEEECCCCHHHHHHHHCCC
EIYRMLWQQMVFLVLGNGIKTLVMAFVILSLLKHLVIGRLARLSAFANTVSLANGERINK
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PFWPANEQDEIGSVGRALEAMYHRLRSDLALIRMQQRQLARRGRALSHTVAAQDSQLNWL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCHHH
ANANSLLAKVSLQFLAATSADASKELNHFTRELGALLGVERVSVLEFVKGKATYRSFWSS
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCC
NESDAPASELVIDNLPLLKQKFGHSHTLVIEDVESLKDSSSQEYRYMKQLGIVSVAGFAI
CCCCCCHHHHHHCCCHHHHHHCCCCCEEEHHHHHHHCCCCHHHHHHHHHHCHHHCCCEEE
ADGDTLLGVLLVANHRLPLNWSPEKTHILTQFASALNELWLRERHENRMFELQQELMRAN
ECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MHLAREAVTDPLTGLTNRRPFTERLSMQLEQGGILLMADVDFFKGYNDTYGHVAGDDVLK
HHHHHHHHHCCHHCCCCCCCHHHHHHHHHHCCCEEEEECCHHHCCCCCCCCCCCHHHHHH
KLAMELQALLSDSALLARIGGEEFALIAPVMSEAELEALCDRLLTHVRNLAIEHRGSHFG
HHHHHHHHHHCCCHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
IVTLSLGAINLENSSNVRDALSQADASLYLAKQQGRNLAVINGHVSPAARQMSSS
EEEEEEEEEECCCCCHHHHHHHHHHHHEEEEHHCCCEEEEEECCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]