| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119776331
Identifier: 119776331
GI number: 119776331
Start: 3790687
End: 3790935
Strand: Reverse
Name: 119776331
Synonym: Sama_3199
Alternate gene names: NA
Gene position: 3790935-3790687 (Counterclockwise)
Preceding gene: 119776345
Following gene: 119776330
Centisome position: 88.04
GC content: 51.0
Gene sequence:
>249_bases ATGGAAGCTTTGAACATGACAGAAGTCGTTGGCTATATGGCCTCGGTGATGGTCGCTATCTCGCTGATGATGAAAGATAT TATCTGGCTCAGATGGCTGAACTTCGTCGGCTGCAGCCTGTTTGTTGCCTACGGTGTTGCCATCACGGCCTGGCCAGTGG CGGGCATGAATGCTTTCGTTGCCTGTATCAACATTTACCATCTCTTCAAGATCTACCGCGCCAAGACGCAAAAGCCCGTT GTAGCCTGA
Upstream 100 bases:
>100_bases TCGCCAGTCCCATTCCAGTTTCAATTAACAAATCGCTTTAGGGGCACGGACCCCCCAGTAAGCTCAGGGAAGGCAGAGGG CCTTATATCGAGGTGCCTTT
Downstream 100 bases:
>100_bases GTTTCGCCCCGGCGAATGTCATAAAAGTGTCGGGTGGGTGTCACCTGCCCGTCACGCATCCCAGCTAGCATTCGAGACAT CCTGGATAAATCCTGTGGAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 82; Mature: 82
Protein sequence:
>82_residues MEALNMTEVVGYMASVMVAISLMMKDIIWLRWLNFVGCSLFVAYGVAITAWPVAGMNAFVACINIYHLFKIYRAKTQKPV VA
Sequences:
>Translated_82_residues MEALNMTEVVGYMASVMVAISLMMKDIIWLRWLNFVGCSLFVAYGVAITAWPVAGMNAFVACINIYHLFKIYRAKTQKPV VA >Mature_82_residues MEALNMTEVVGYMASVMVAISLMMKDIIWLRWLNFVGCSLFVAYGVAITAWPVAGMNAFVACINIYHLFKIYRAKTQKPV VA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR019629 [H]
Pfam domain/function: PF10688 Imp-YgjV [H]
EC number: NA
Molecular weight: Translated: 9193; Mature: 9193
Theoretical pI: Translated: 9.20; Mature: 9.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 8.5 %Met (Translated Protein) 11.0 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 8.5 %Met (Mature Protein) 11.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEALNMTEVVGYMASVMVAISLMMKDIIWLRWLNFVGCSLFVAYGVAITAWPVAGMNAFV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ACINIYHLFKIYRAKTQKPVVA HHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MEALNMTEVVGYMASVMVAISLMMKDIIWLRWLNFVGCSLFVAYGVAITAWPVAGMNAFV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ACINIYHLFKIYRAKTQKPVVA HHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]