| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119776330
Identifier: 119776330
GI number: 119776330
Start: 3790069
End: 3790581
Strand: Reverse
Name: 119776330
Synonym: Sama_3198
Alternate gene names: NA
Gene position: 3790581-3790069 (Counterclockwise)
Preceding gene: 119776331
Following gene: 119776329
Centisome position: 88.03
GC content: 58.28
Gene sequence:
>513_bases ATGCTGGCACGCCTTGCCGAGTTTGACAGACGCAGTTATCTCCTCATCGTCGAGCGTGCCCGTGTGCACGGGTTGAACAG ACCGGCCATGCTGGTCTCAGCTTCCGGCGATGGTCCCCTCTATCTCTACCTTTGTGTGGCCCTGATGCTGTTCGACAGCC GGGGAGAAGAGCTGTTTCGGCTGACGTTGGTTGCGTTTTTGCTGGAACTGCCCCTGTATTTGCTGCTGAAAAACAGTATC CGCCGTACCCGCCCATGCCACAGTGCCATAGGTCTGGGTTGCAGTTTTGAACCCTCGGATAAATTCAGTCTGCCGTCCGG TCACACGGCCGCCGCCTTCGTGATGGCCGGTGCCGTCGGCACTATCTATCCCGTTGCCATATTGCCCCTGTATCTCTGGG CGTGCCTGATTGGCCTGTCCCGGGTGGTGCTGGGGGTGCATTACCCTATGGATATTCTGGCCGGGGCAGCCCTTGGCAGC CTGTCTGTGGTCTGGGTCAACGAATTCATTTGA
Upstream 100 bases:
>100_bases GCCCCGGCGAATGTCATAAAAGTGTCGGGTGGGTGTCACCTGCCCGTCACGCATCCCAGCTAGCATTCGAGACATCCTGG ATAAATCCTGTGGAGGCCGG
Downstream 100 bases:
>100_bases TAAGGATGTCATTGAAATCATGAAAATACTGTACGGAGTGCAGGGGACGGGTAATGGCCACTTGAGCCGGGCGAGGGTGA TGGCCAAAGCCCTTGCCGAG
Product: PAP2 family protein
Products: NA
Alternate protein names: PAP2 Family Protein; Membrane-Associated Phospholipid Phosphatase; Phosphoesterase PA-Phosphatase-Like Protein; PAP2 Superfamily Protein; Phospholipid Phosphatase; Acid Phosphatase-Like Protein; Type II Phosphatidic Acid Phosphatase; Phosphoesterase PA-Phosphatase Related Protein; Phosphoesterase Pa-Phosphatase Related Protein
Number of amino acids: Translated: 170; Mature: 170
Protein sequence:
>170_residues MLARLAEFDRRSYLLIVERARVHGLNRPAMLVSASGDGPLYLYLCVALMLFDSRGEELFRLTLVAFLLELPLYLLLKNSI RRTRPCHSAIGLGCSFEPSDKFSLPSGHTAAAFVMAGAVGTIYPVAILPLYLWACLIGLSRVVLGVHYPMDILAGAALGS LSVVWVNEFI
Sequences:
>Translated_170_residues MLARLAEFDRRSYLLIVERARVHGLNRPAMLVSASGDGPLYLYLCVALMLFDSRGEELFRLTLVAFLLELPLYLLLKNSI RRTRPCHSAIGLGCSFEPSDKFSLPSGHTAAAFVMAGAVGTIYPVAILPLYLWACLIGLSRVVLGVHYPMDILAGAALGS LSVVWVNEFI >Mature_170_residues MLARLAEFDRRSYLLIVERARVHGLNRPAMLVSASGDGPLYLYLCVALMLFDSRGEELFRLTLVAFLLELPLYLLLKNSI RRTRPCHSAIGLGCSFEPSDKFSLPSGHTAAAFVMAGAVGTIYPVAILPLYLWACLIGLSRVVLGVHYPMDILAGAALGS LSVVWVNEFI
Specific function: Unknown
COG id: COG0671
COG function: function code I; Membrane-associated phospholipid phosphatase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Drosophila melanogaster, GI24583289, Length=114, Percent_Identity=35.9649122807018, Blast_Score=67, Evalue=6e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18625; Mature: 18625
Theoretical pI: Translated: 8.32; Mature: 8.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLARLAEFDRRSYLLIVERARVHGLNRPAMLVSASGDGPLYLYLCVALMLFDSRGEELFR CCCHHHHHCCCCEEEEEEHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCHHHHH LTLVAFLLELPLYLLLKNSIRRTRPCHSAIGLGCSFEPSDKFSLPSGHTAAAFVMAGAVG HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH TIYPVAILPLYLWACLIGLSRVVLGVHYPMDILAGAALGSLSVVWVNEFI HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCEEEEEEECCC >Mature Secondary Structure MLARLAEFDRRSYLLIVERARVHGLNRPAMLVSASGDGPLYLYLCVALMLFDSRGEELFR CCCHHHHHCCCCEEEEEEHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCHHHHH LTLVAFLLELPLYLLLKNSIRRTRPCHSAIGLGCSFEPSDKFSLPSGHTAAAFVMAGAVG HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH TIYPVAILPLYLWACLIGLSRVVLGVHYPMDILAGAALGSLSVVWVNEFI HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA