Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

Click here to switch to the map view.

The map label for this gene is 119776330

Identifier: 119776330

GI number: 119776330

Start: 3790069

End: 3790581

Strand: Reverse

Name: 119776330

Synonym: Sama_3198

Alternate gene names: NA

Gene position: 3790581-3790069 (Counterclockwise)

Preceding gene: 119776331

Following gene: 119776329

Centisome position: 88.03

GC content: 58.28

Gene sequence:

>513_bases
ATGCTGGCACGCCTTGCCGAGTTTGACAGACGCAGTTATCTCCTCATCGTCGAGCGTGCCCGTGTGCACGGGTTGAACAG
ACCGGCCATGCTGGTCTCAGCTTCCGGCGATGGTCCCCTCTATCTCTACCTTTGTGTGGCCCTGATGCTGTTCGACAGCC
GGGGAGAAGAGCTGTTTCGGCTGACGTTGGTTGCGTTTTTGCTGGAACTGCCCCTGTATTTGCTGCTGAAAAACAGTATC
CGCCGTACCCGCCCATGCCACAGTGCCATAGGTCTGGGTTGCAGTTTTGAACCCTCGGATAAATTCAGTCTGCCGTCCGG
TCACACGGCCGCCGCCTTCGTGATGGCCGGTGCCGTCGGCACTATCTATCCCGTTGCCATATTGCCCCTGTATCTCTGGG
CGTGCCTGATTGGCCTGTCCCGGGTGGTGCTGGGGGTGCATTACCCTATGGATATTCTGGCCGGGGCAGCCCTTGGCAGC
CTGTCTGTGGTCTGGGTCAACGAATTCATTTGA

Upstream 100 bases:

>100_bases
GCCCCGGCGAATGTCATAAAAGTGTCGGGTGGGTGTCACCTGCCCGTCACGCATCCCAGCTAGCATTCGAGACATCCTGG
ATAAATCCTGTGGAGGCCGG

Downstream 100 bases:

>100_bases
TAAGGATGTCATTGAAATCATGAAAATACTGTACGGAGTGCAGGGGACGGGTAATGGCCACTTGAGCCGGGCGAGGGTGA
TGGCCAAAGCCCTTGCCGAG

Product: PAP2 family protein

Products: NA

Alternate protein names: PAP2 Family Protein; Membrane-Associated Phospholipid Phosphatase; Phosphoesterase PA-Phosphatase-Like Protein; PAP2 Superfamily Protein; Phospholipid Phosphatase; Acid Phosphatase-Like Protein; Type II Phosphatidic Acid Phosphatase; Phosphoesterase PA-Phosphatase Related Protein; Phosphoesterase Pa-Phosphatase Related Protein

Number of amino acids: Translated: 170; Mature: 170

Protein sequence:

>170_residues
MLARLAEFDRRSYLLIVERARVHGLNRPAMLVSASGDGPLYLYLCVALMLFDSRGEELFRLTLVAFLLELPLYLLLKNSI
RRTRPCHSAIGLGCSFEPSDKFSLPSGHTAAAFVMAGAVGTIYPVAILPLYLWACLIGLSRVVLGVHYPMDILAGAALGS
LSVVWVNEFI

Sequences:

>Translated_170_residues
MLARLAEFDRRSYLLIVERARVHGLNRPAMLVSASGDGPLYLYLCVALMLFDSRGEELFRLTLVAFLLELPLYLLLKNSI
RRTRPCHSAIGLGCSFEPSDKFSLPSGHTAAAFVMAGAVGTIYPVAILPLYLWACLIGLSRVVLGVHYPMDILAGAALGS
LSVVWVNEFI
>Mature_170_residues
MLARLAEFDRRSYLLIVERARVHGLNRPAMLVSASGDGPLYLYLCVALMLFDSRGEELFRLTLVAFLLELPLYLLLKNSI
RRTRPCHSAIGLGCSFEPSDKFSLPSGHTAAAFVMAGAVGTIYPVAILPLYLWACLIGLSRVVLGVHYPMDILAGAALGS
LSVVWVNEFI

Specific function: Unknown

COG id: COG0671

COG function: function code I; Membrane-associated phospholipid phosphatase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Drosophila melanogaster, GI24583289, Length=114, Percent_Identity=35.9649122807018, Blast_Score=67, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18625; Mature: 18625

Theoretical pI: Translated: 8.32; Mature: 8.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLARLAEFDRRSYLLIVERARVHGLNRPAMLVSASGDGPLYLYLCVALMLFDSRGEELFR
CCCHHHHHCCCCEEEEEEHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCHHHHH
LTLVAFLLELPLYLLLKNSIRRTRPCHSAIGLGCSFEPSDKFSLPSGHTAAAFVMAGAVG
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
TIYPVAILPLYLWACLIGLSRVVLGVHYPMDILAGAALGSLSVVWVNEFI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCEEEEEEECCC
>Mature Secondary Structure
MLARLAEFDRRSYLLIVERARVHGLNRPAMLVSASGDGPLYLYLCVALMLFDSRGEELFR
CCCHHHHHCCCCEEEEEEHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCHHHHH
LTLVAFLLELPLYLLLKNSIRRTRPCHSAIGLGCSFEPSDKFSLPSGHTAAAFVMAGAVG
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
TIYPVAILPLYLWACLIGLSRVVLGVHYPMDILAGAALGSLSVVWVNEFI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA