| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119776313
Identifier: 119776313
GI number: 119776313
Start: 3772018
End: 3773139
Strand: Direct
Name: 119776313
Synonym: Sama_3181
Alternate gene names: NA
Gene position: 3772018-3773139 (Clockwise)
Preceding gene: 119776312
Following gene: 119776315
Centisome position: 87.6
GC content: 59.71
Gene sequence:
>1122_bases ATGCGTCCACGCCCCCCAATCAGGCTCACCGAATTTACCGGTGCTTTTGCCGATTTGGGTACCTTTCTGCCACTGGTTCT CGGCCTGATTGCACTCAACCAATTTTCGCCCCAGGGCATTTTCCTCGGCTTTGGCCTGTTCGCCTGTGCCACGGCACTGT TTTATCGCCGTCCCATTCCGGTGCAACCCATGAAGGTAATAGCGGCTCTGGTCATAGCCCAGCAGCTCACACCGGGCATG ATGCAGGCCAGCGCCATGCTGATGGGCGTTATACTCCTGGTGCTGGCGGCCTCCGGTGCCATCAGCTGGCTGGCACGACA AATCTCCCAGGCAATCAGCGTCGGTATTCAGCTCGCTATCGGGCTGCAGCTGCTGTGGATGGGACTTACGATGATGACAG ACGCCCCTGTGCTGGGCTTTGGCGCCTTTGCGCTGATTTTTGTATCACGCTTCTTTCCCCTGAAATACCTCGCCATGCCA CTGGTGATCCTGCTCGGTATGCTGTGGCAGTATCAAAGCGGCGCCGCAATGAGCCCAAGCTTTAACAACACCCCCTGGCA TCTGGGCTGGCCCGATGTTTCAGACTGGGGCGCGGCCGCCACCCTGCTGGTGCTACCTCAGCTGGCGCTGACCCTGACCA ATGCCGTGATTGCCACCTCTGTGATGGCCAAAGACAAGTTCCCCGAGGATGCCGAGCGTTTCAGCCCCAAGGCGCTGGCC ACCAGCTCAGGGCTGGCCAATCTGCTCTTGAGCCCCTTTGGCGGTGCAGCCATGTGCCACGGCGCCGGTGGTCTTGCGGT GCAGTATCACTTTGGCGCCAGACAGCTGTGGGCGGGACTTATTTTCGGCATAACCTGCCTGGCTATCGCTTTGGGGTGGA ATGAGCAGGTGGCCTGGCTGTTGGGACTCATCCCCATGGCTATTCTTGGAAGCCTGCTTTCCACCGCAGGGCTGCAACTG GCCTGGTCCAAGCGCTTTCTCGATGGCAAACCCTACTGCCTGTTTGTGATAGGCGCCACCGCCATCGTCAGTCTGGGAGT CAATGCCGCAGCCGGCTTAGCGGTGGGCATGCTGCTGGAATTGGGTCGCCGCCAGTGGCTCAATCAGAGGCAGCTTGACT GA
Upstream 100 bases:
>100_bases ATCCATGGAGTTTTTGGGACTCTGGCTACCTATAAAGGTTTATAAAGCTGGCATTACCCTTGCTGTATAAGGGGTAATAT TCACTCTTCAGGCAACCTGC
Downstream 100 bases:
>100_bases GTCGCTGATAAAAGCTTATACAGACTCATCGTCCGCCAGCAATGGTAACCACACAGTGACCCGGCAACCGCTGCCGTCCT GGCGGTTTTGCAGCTGAATA
Product: transporter
Products: NA
Alternate protein names: Sulfate Permease; Xanthine/Uracil/Vitamin C Permease; MFS Superfamily Sulfate Permease; Sulfate Transporter Family Permease; Sulfate Permease SulP; Sulfate Permease-Like Transporter Mfs Superfamily; Sulfate Permease-Like Transporter MFS Superfamily
Number of amino acids: Translated: 373; Mature: 373
Protein sequence:
>373_residues MRPRPPIRLTEFTGAFADLGTFLPLVLGLIALNQFSPQGIFLGFGLFACATALFYRRPIPVQPMKVIAALVIAQQLTPGM MQASAMLMGVILLVLAASGAISWLARQISQAISVGIQLAIGLQLLWMGLTMMTDAPVLGFGAFALIFVSRFFPLKYLAMP LVILLGMLWQYQSGAAMSPSFNNTPWHLGWPDVSDWGAAATLLVLPQLALTLTNAVIATSVMAKDKFPEDAERFSPKALA TSSGLANLLLSPFGGAAMCHGAGGLAVQYHFGARQLWAGLIFGITCLAIALGWNEQVAWLLGLIPMAILGSLLSTAGLQL AWSKRFLDGKPYCLFVIGATAIVSLGVNAAAGLAVGMLLELGRRQWLNQRQLD
Sequences:
>Translated_373_residues MRPRPPIRLTEFTGAFADLGTFLPLVLGLIALNQFSPQGIFLGFGLFACATALFYRRPIPVQPMKVIAALVIAQQLTPGM MQASAMLMGVILLVLAASGAISWLARQISQAISVGIQLAIGLQLLWMGLTMMTDAPVLGFGAFALIFVSRFFPLKYLAMP LVILLGMLWQYQSGAAMSPSFNNTPWHLGWPDVSDWGAAATLLVLPQLALTLTNAVIATSVMAKDKFPEDAERFSPKALA TSSGLANLLLSPFGGAAMCHGAGGLAVQYHFGARQLWAGLIFGITCLAIALGWNEQVAWLLGLIPMAILGSLLSTAGLQL AWSKRFLDGKPYCLFVIGATAIVSLGVNAAAGLAVGMLLELGRRQWLNQRQLD >Mature_373_residues MRPRPPIRLTEFTGAFADLGTFLPLVLGLIALNQFSPQGIFLGFGLFACATALFYRRPIPVQPMKVIAALVIAQQLTPGM MQASAMLMGVILLVLAASGAISWLARQISQAISVGIQLAIGLQLLWMGLTMMTDAPVLGFGAFALIFVSRFFPLKYLAMP LVILLGMLWQYQSGAAMSPSFNNTPWHLGWPDVSDWGAAATLLVLPQLALTLTNAVIATSVMAKDKFPEDAERFSPKALA TSSGLANLLLSPFGGAAMCHGAGGLAVQYHFGARQLWAGLIFGITCLAIALGWNEQVAWLLGLIPMAILGSLLSTAGLQL AWSKRFLDGKPYCLFVIGATAIVSLGVNAAAGLAVGMLLELGRRQWLNQRQLD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39786; Mature: 39786
Theoretical pI: Translated: 9.78; Mature: 9.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRPRPPIRLTEFTGAFADLGTFLPLVLGLIALNQFSPQGIFLGFGLFACATALFYRRPIP CCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCC VQPMKVIAALVIAQQLTPGMMQASAMLMGVILLVLAASGAISWLARQISQAISVGIQLAI CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GLQLLWMGLTMMTDAPVLGFGAFALIFVSRFFPLKYLAMPLVILLGMLWQYQSGAAMSPS HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC FNNTPWHLGWPDVSDWGAAATLLVLPQLALTLTNAVIATSVMAKDKFPEDAERFSPKALA CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHH TSSGLANLLLSPFGGAAMCHGAGGLAVQYHFGARQLWAGLIFGITCLAIALGWNEQVAWL HHHHHHHHHHCCCCCCEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCHHHHHH LGLIPMAILGSLLSTAGLQLAWSKRFLDGKPYCLFVIGATAIVSLGVNAAAGLAVGMLLE HHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCEEEEEEHHHHHHHHCCCHHHHHHHHHHHH LGRRQWLNQRQLD HHHHHHHHHCCCC >Mature Secondary Structure MRPRPPIRLTEFTGAFADLGTFLPLVLGLIALNQFSPQGIFLGFGLFACATALFYRRPIP CCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCC VQPMKVIAALVIAQQLTPGMMQASAMLMGVILLVLAASGAISWLARQISQAISVGIQLAI CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GLQLLWMGLTMMTDAPVLGFGAFALIFVSRFFPLKYLAMPLVILLGMLWQYQSGAAMSPS HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC FNNTPWHLGWPDVSDWGAAATLLVLPQLALTLTNAVIATSVMAKDKFPEDAERFSPKALA CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHH TSSGLANLLLSPFGGAAMCHGAGGLAVQYHFGARQLWAGLIFGITCLAIALGWNEQVAWL HHHHHHHHHHCCCCCCEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCHHHHHH LGLIPMAILGSLLSTAGLQLAWSKRFLDGKPYCLFVIGATAIVSLGVNAAAGLAVGMLLE HHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCEEEEEEHHHHHHHHCCCHHHHHHHHHHHH LGRRQWLNQRQLD HHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA