| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is metL [H]
Identifier: 119776302
GI number: 119776302
Start: 3757284
End: 3759677
Strand: Reverse
Name: metL [H]
Synonym: Sama_3170
Alternate gene names: 119776302
Gene position: 3759677-3757284 (Counterclockwise)
Preceding gene: 119776303
Following gene: 119776301
Centisome position: 87.31
GC content: 57.1
Gene sequence:
>2394_bases ATGGCGCGTTGTCATTTGCATAAGTTTGGTGGCTCCAGTTTGGCGGATGCCGATTGCTACCGCCGCGTGGCCCATATCCT GTTGACCCAGGGCCACAGCGACGATCTGGTGGTGGTATCAGCCGCCGGTAAAACCACCAACTTTTTGTATAAGCTGCTTT CGCTGCGTGATGCCGGTGAGTTGTGGCAGGAAGAGTTACAGGTACTGATTAGCTATCAGCAAAACCTGATTGAACAGTTA CTCAGTGCCGAGCAGGCTCGCTATCTGCGTGAGCGTCTGTCGACCGACAAGGCTCAGCTGGTCAGTCTCCTGTCATTGGC GACTCTGAACGATTATCAGACCAGCCATGTGGTGAGCTTTGGTGAGCGTTGGTCCGCCAGGTTGATGGCGGCACTCTTGC GTGAATCCGGCGTGGCGGCAAGCCACGTGGATGCCTGCAGCATACTGGTGGCAGATGAAGGCGCCGTGCCCAATATTCGC GAGCAGGAGTCCCGCGAAAAAGTAGCTGCCATGCTGGCCGAACATGAAAACGAACGCATTGTTATCACGGGCTTTATCTG CGCCAATCCGGCCGGTGAAACCCTGTTGCTTGGGCGTAACGGCTCTGACTTTTCCGCGACCCTGATAGCCAGTCTGGCAG ATATCGAACGGGTCACCATCTGGACTGATGTGGAAGGGGTGTTCAACGCCGACCCGAATAAGATAAACGATGCCAAGCTG CTCAAGAGCATGTCACTGGCGGAGGCCGACCGCCTGGCGCGTTTGGGTTCTCCTGTGTTACACAGCCGCACTTTGCAGCC CCTGTTCAACACCCAGGTGAGCATGGCAGTGCGCTCAAGCTACGCGCCTCATACCGATTTTACTCTGGTTGCTCCAACCA GCTCTCAGGCCAGTGCCCCGGTTGTCACCAATCTGAGCGAAGTGGCGCTCTTTAGCCTCACCACCCAGGCAGACACCGAT GCCCTGTTGGCAACATTGTCTGCCTCTGGCTTAACGCCGTTGGCAAGCTGGCAGGGTTCCAGGGGTGGGCTGGAACTGGC CTATACTCCGGAAAATCTTAAGCAGGTCAGCGCCTTTTTAAAGGCGAACGCCGAGGCATATGGTCTGGGCGATGTTTCCA TCAGCAACGATTTTGGTTTGGTGGCACTGGTGAGCGCCGATGCGGTACTGTACCGCAAGAGTTTTGCCCGCCTGCTCAGT CGCGAGGCCAAGCCTTTGTATCATGATACCCTGAGCCTGGTGACTCTGGTGCCAAAGGCGCAGGTGAACCTGCTTACGCA AAAGGTGCACCGCCGCTGCGCCGGGCCACGCAAGCGTATTGGCGTCATTCTCCTTGGTGTTGGCAACATCGGCGAAGCCT GGGTAAGCCTGTTTCGCCGGGCCCAAAGCAGTCTGTGCCGTGAGCTGGAGGCGCGGATTGAACTCGTGGGGCTGGTCAGC TCTTCCCGCGCCTACATCAACAATGCCGGTGTGCACCTGGAGAACTGGAAAACCGAATTTGAGGAGTACGCCACCGACTG GCAGTACGGGCAGTTGTTCGAAGCCTTATCGACACTGAATTGCGATGAGCTGGTTGCGCTGGACATCAGTGCCAGTGCCA GCCTGACCTTGCAGTACCCGGAGTTTTTTGCCCGTGGTATTCATGTGGTGAGCGCAAATAAGCTGGCCGGTTCTGGTCCC TTGCCCTTTTATCGCGATCTCAAGCAGCAGTTGGGTAACCGTCGTCTCTATTGGCGCTACAACGCCAGCTGCGGTGCCGG TTTGCCGGTGCAGCATGCGCTTAACGATTTGCACAACAGTGGCGACAGCGTAGAAGCCGTGGGCGGGATATTTTCCGGTA CTCTCTGTTGGCTTTTTGAACACTATGACGGTCAGCGTCCTTTCTCTGATTTGGTCATTGAGGCCCGCGGCCTGGGTATC ACTGAGCCGGACCCGAGGGACGATCTTTCCGGTCGTGATATGCAGCGCAAGCTGCTCATCCTTGCGCGGGAAATTGGCCT GGATCTGGAGCTGGATGATATTCAGGTCGAGTCTCCTGTACCGCCGCATCTGGCGGAGCTGACGCTGGATGAGTTTCTTG CCCGCATTGATGAACTCGATGCCCCCATGGCGGATGCCTTGGCGGCTGCCGCAGCCGAGGGCAAGGTGCTGCGTTATATC GCTGCGCTGGACAGAGCCGGTGGTCAGTTAATGGCACGGGTAGGGTTGCAGTGGGTCGACAAAGCCCACCCTTATGCCAA TCTCACCCCGGGCGACAATGTGTTTGTCATTCGCAGTACCTTTTACCAGGGTAATCCTTTGATTATCAGGGGGCCCGGTG CCGGTCGTGAGGTAACAGCCGCGGCTGTTCAGTCAGATCTGGTGCAGATCTGTCGGGATCTCTTGCAGGATTGA
Upstream 100 bases:
>100_bases CTGCTGCGACTGTCGGTGGGGATTGAAGATGCAGAAGATTTAGTGGCCGATATCCAAGCCGGCCTGGCTGCCGTGGCAGC CTGTTGAATAGGAGTCAGTG
Downstream 100 bases:
>100_bases TTTTATAAGATATTGAATAACAGGGACTCTTTTGAGTCCCTGTGTTTTTTCCGCCTTCTGCTCGCAAAAAGGGCAAGATC GGGCCATTTTTTAACTTGAC
Product: bifunctional aspartate kinase II/homoserine dehydrogenase II
Products: NA
Alternate protein names: Aspartokinase II/homoserine dehydrogenase II; AKII-HDII; Aspartokinase; Homoserine dehydrogenase [H]
Number of amino acids: Translated: 797; Mature: 796
Protein sequence:
>797_residues MARCHLHKFGGSSLADADCYRRVAHILLTQGHSDDLVVVSAAGKTTNFLYKLLSLRDAGELWQEELQVLISYQQNLIEQL LSAEQARYLRERLSTDKAQLVSLLSLATLNDYQTSHVVSFGERWSARLMAALLRESGVAASHVDACSILVADEGAVPNIR EQESREKVAAMLAEHENERIVITGFICANPAGETLLLGRNGSDFSATLIASLADIERVTIWTDVEGVFNADPNKINDAKL LKSMSLAEADRLARLGSPVLHSRTLQPLFNTQVSMAVRSSYAPHTDFTLVAPTSSQASAPVVTNLSEVALFSLTTQADTD ALLATLSASGLTPLASWQGSRGGLELAYTPENLKQVSAFLKANAEAYGLGDVSISNDFGLVALVSADAVLYRKSFARLLS REAKPLYHDTLSLVTLVPKAQVNLLTQKVHRRCAGPRKRIGVILLGVGNIGEAWVSLFRRAQSSLCRELEARIELVGLVS SSRAYINNAGVHLENWKTEFEEYATDWQYGQLFEALSTLNCDELVALDISASASLTLQYPEFFARGIHVVSANKLAGSGP LPFYRDLKQQLGNRRLYWRYNASCGAGLPVQHALNDLHNSGDSVEAVGGIFSGTLCWLFEHYDGQRPFSDLVIEARGLGI TEPDPRDDLSGRDMQRKLLILAREIGLDLELDDIQVESPVPPHLAELTLDEFLARIDELDAPMADALAAAAAEGKVLRYI AALDRAGGQLMARVGLQWVDKAHPYANLTPGDNVFVIRSTFYQGNPLIIRGPGAGREVTAAAVQSDLVQICRDLLQD
Sequences:
>Translated_797_residues MARCHLHKFGGSSLADADCYRRVAHILLTQGHSDDLVVVSAAGKTTNFLYKLLSLRDAGELWQEELQVLISYQQNLIEQL LSAEQARYLRERLSTDKAQLVSLLSLATLNDYQTSHVVSFGERWSARLMAALLRESGVAASHVDACSILVADEGAVPNIR EQESREKVAAMLAEHENERIVITGFICANPAGETLLLGRNGSDFSATLIASLADIERVTIWTDVEGVFNADPNKINDAKL LKSMSLAEADRLARLGSPVLHSRTLQPLFNTQVSMAVRSSYAPHTDFTLVAPTSSQASAPVVTNLSEVALFSLTTQADTD ALLATLSASGLTPLASWQGSRGGLELAYTPENLKQVSAFLKANAEAYGLGDVSISNDFGLVALVSADAVLYRKSFARLLS REAKPLYHDTLSLVTLVPKAQVNLLTQKVHRRCAGPRKRIGVILLGVGNIGEAWVSLFRRAQSSLCRELEARIELVGLVS SSRAYINNAGVHLENWKTEFEEYATDWQYGQLFEALSTLNCDELVALDISASASLTLQYPEFFARGIHVVSANKLAGSGP LPFYRDLKQQLGNRRLYWRYNASCGAGLPVQHALNDLHNSGDSVEAVGGIFSGTLCWLFEHYDGQRPFSDLVIEARGLGI TEPDPRDDLSGRDMQRKLLILAREIGLDLELDDIQVESPVPPHLAELTLDEFLARIDELDAPMADALAAAAAEGKVLRYI AALDRAGGQLMARVGLQWVDKAHPYANLTPGDNVFVIRSTFYQGNPLIIRGPGAGREVTAAAVQSDLVQICRDLLQD >Mature_796_residues ARCHLHKFGGSSLADADCYRRVAHILLTQGHSDDLVVVSAAGKTTNFLYKLLSLRDAGELWQEELQVLISYQQNLIEQLL SAEQARYLRERLSTDKAQLVSLLSLATLNDYQTSHVVSFGERWSARLMAALLRESGVAASHVDACSILVADEGAVPNIRE QESREKVAAMLAEHENERIVITGFICANPAGETLLLGRNGSDFSATLIASLADIERVTIWTDVEGVFNADPNKINDAKLL KSMSLAEADRLARLGSPVLHSRTLQPLFNTQVSMAVRSSYAPHTDFTLVAPTSSQASAPVVTNLSEVALFSLTTQADTDA LLATLSASGLTPLASWQGSRGGLELAYTPENLKQVSAFLKANAEAYGLGDVSISNDFGLVALVSADAVLYRKSFARLLSR EAKPLYHDTLSLVTLVPKAQVNLLTQKVHRRCAGPRKRIGVILLGVGNIGEAWVSLFRRAQSSLCRELEARIELVGLVSS SRAYINNAGVHLENWKTEFEEYATDWQYGQLFEALSTLNCDELVALDISASASLTLQYPEFFARGIHVVSANKLAGSGPL PFYRDLKQQLGNRRLYWRYNASCGAGLPVQHALNDLHNSGDSVEAVGGIFSGTLCWLFEHYDGQRPFSDLVIEARGLGIT EPDPRDDLSGRDMQRKLLILAREIGLDLELDDIQVESPVPPHLAELTLDEFLARIDELDAPMADALAAAAAEGKVLRYIA ALDRAGGQLMARVGLQWVDKAHPYANLTPGDNVFVIRSTFYQGNPLIIRGPGAGREVTAAAVQSDLVQICRDLLQD
Specific function: Catalyzes 2 nonconsecutive reactions in the common biosynthetic pathway leading from Asp to diaminopimelate and Lys, to Met, and to Thr and Ile. [C]
COG id: COG0460
COG function: function code E; Homoserine dehydrogenase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the homoserine dehydrogenase family [H]
Homologues:
Organism=Escherichia coli, GI1790376, Length=805, Percent_Identity=42.360248447205, Blast_Score=563, Evalue=1e-161, Organism=Escherichia coli, GI1786183, Length=338, Percent_Identity=37.5739644970414, Blast_Score=218, Evalue=1e-57, Organism=Escherichia coli, GI1790455, Length=294, Percent_Identity=35.3741496598639, Blast_Score=124, Evalue=2e-29, Organism=Saccharomyces cerevisiae, GI6322599, Length=375, Percent_Identity=33.0666666666667, Blast_Score=160, Evalue=6e-40, Organism=Saccharomyces cerevisiae, GI6320893, Length=311, Percent_Identity=26.6881028938907, Blast_Score=98, Evalue=5e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001048 - InterPro: IPR005106 - InterPro: IPR001341 - InterPro: IPR018042 - InterPro: IPR011147 - InterPro: IPR001342 - InterPro: IPR019811 - InterPro: IPR016040 [H]
Pfam domain/function: PF00696 AA_kinase; PF00742 Homoserine_dh; PF03447 NAD_binding_3 [H]
EC number: =2.7.2.4; =1.1.1.3 [H]
Molecular weight: Translated: 86900; Mature: 86768
Theoretical pI: Translated: 5.26; Mature: 5.26
Prosite motif: PS01042 HOMOSER_DHGENASE ; PS00324 ASPARTOKINASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARCHLHKFGGSSLADADCYRRVAHILLTQGHSDDLVVVSAAGKTTNFLYKLLSLRDAGE CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHCCHHH LWQEELQVLISYQQNLIEQLLSAEQARYLRERLSTDKAQLVSLLSLATLNDYQTSHVVSF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHH GERWSARLMAALLRESGVAASHVDACSILVADEGAVPNIREQESREKVAAMLAEHENERI HHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEE VITGFICANPAGETLLLGRNGSDFSATLIASLADIERVTIWTDVEGVFNADPNKINDAKL EEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHH LKSMSLAEADRLARLGSPVLHSRTLQPLFNTQVSMAVRSSYAPHTDFTLVAPTSSQASAP HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCC VVTNLSEVALFSLTTQADTDALLATLSASGLTPLASWQGSRGGLELAYTPENLKQVSAFL HHHCHHHHHEEEEECCCCHHHHHHHHHCCCCCCHHHCCCCCCCEEEEECHHHHHHHHHHH KANAEAYGLGDVSISNDFGLVALVSADAVLYRKSFARLLSREAKPLYHDTLSLVTLVPKA HCCCCEEECCCEEECCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHH QVNLLTQKVHRRCAGPRKRIGVILLGVGNIGEAWVSLFRRAQSSLCRELEARIELVGLVS HHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEC SSRAYINNAGVHLENWKTEFEEYATDWQYGQLFEALSTLNCDELVALDISASASLTLQYP CCCHHCCCCCEEEHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEECCCCEEEEECH EFFARGIHVVSANKLAGSGPLPFYRDLKQQLGNRRLYWRYNASCGAGLPVQHALNDLHNS HHHHCCEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHCC GDSVEAVGGIFSGTLCWLFEHYDGQRPFSDLVIEARGLGITEPDPRDDLSGRDMQRKLLI CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHEEECCCCCCCCCCCCCCCCCHHHHHHHH LAREIGLDLELDDIQVESPVPPHLAELTLDEFLARIDELDAPMADALAAAAAEGKVLRYI HHHHHCCCEEECCEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHH AALDRAGGQLMARVGLQWVDKAHPYANLTPGDNVFVIRSTFYQGNPLIIRGPGAGREVTA HHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHH AAVQSDLVQICRDLLQD HHHHHHHHHHHHHHHCC >Mature Secondary Structure ARCHLHKFGGSSLADADCYRRVAHILLTQGHSDDLVVVSAAGKTTNFLYKLLSLRDAGE CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHCCHHH LWQEELQVLISYQQNLIEQLLSAEQARYLRERLSTDKAQLVSLLSLATLNDYQTSHVVSF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHH GERWSARLMAALLRESGVAASHVDACSILVADEGAVPNIREQESREKVAAMLAEHENERI HHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEE VITGFICANPAGETLLLGRNGSDFSATLIASLADIERVTIWTDVEGVFNADPNKINDAKL EEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHH LKSMSLAEADRLARLGSPVLHSRTLQPLFNTQVSMAVRSSYAPHTDFTLVAPTSSQASAP HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCC VVTNLSEVALFSLTTQADTDALLATLSASGLTPLASWQGSRGGLELAYTPENLKQVSAFL HHHCHHHHHEEEEECCCCHHHHHHHHHCCCCCCHHHCCCCCCCEEEEECHHHHHHHHHHH KANAEAYGLGDVSISNDFGLVALVSADAVLYRKSFARLLSREAKPLYHDTLSLVTLVPKA HCCCCEEECCCEEECCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHH QVNLLTQKVHRRCAGPRKRIGVILLGVGNIGEAWVSLFRRAQSSLCRELEARIELVGLVS HHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEC SSRAYINNAGVHLENWKTEFEEYATDWQYGQLFEALSTLNCDELVALDISASASLTLQYP CCCHHCCCCCEEEHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEECCCCEEEEECH EFFARGIHVVSANKLAGSGPLPFYRDLKQQLGNRRLYWRYNASCGAGLPVQHALNDLHNS HHHHCCEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHCC GDSVEAVGGIFSGTLCWLFEHYDGQRPFSDLVIEARGLGITEPDPRDDLSGRDMQRKLLI CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHEEECCCCCCCCCCCCCCCCCHHHHHHHH LAREIGLDLELDDIQVESPVPPHLAELTLDEFLARIDELDAPMADALAAAAAEGKVLRYI HHHHHCCCEEECCEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHH AALDRAGGQLMARVGLQWVDKAHPYANLTPGDNVFVIRSTFYQGNPLIIRGPGAGREVTA HHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHH AAVQSDLVQICRDLLQD HHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 6298218; 8346018; 9278503 [H]