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The map label for this gene is bphB [H]

Identifier: 119776295

GI number: 119776295

Start: 3749256

End: 3751307

Strand: Reverse

Name: bphB [H]

Synonym: Sama_3163

Alternate gene names: 119776295

Gene position: 3751307-3749256 (Counterclockwise)

Preceding gene: 119776298

Following gene: 119776294

Centisome position: 87.12

GC content: 50.54

Gene sequence:

>2052_bases
ATGCTGGTGTCCATGGCGTTTGCCTTCACAGGTTGGTACCAGTTTCATCAGTACATCAACGATCTCAAGGAAGAACGTTT
TGAAGACATGGCGCAGGAGCTGAAATTGGCTATCGAGACCCGTATGCTGGCCTATGAACAGGTGCTGCGCAGTGGGGTAG
GCTTGTTTAAGGCATCCAATGGTGTGTCCCGTTCCGAGTGGCGCACCTATGTGGCCAATGCCAAGCTGGACAAGTACTAT
CCCGGCATTCAGGGGGTGGGGTTCAGTCAGGTGGTGCGTAAACCACAACTGCAAGCATTCGAAGCCGCAGTCAGAGCTGA
GGGATTCCCTGCATTCAAGGTTTACCCCGATGGCGATCGCCCCATCTATCACTCCATTCTCTATCTCGAACCCTTTGATT
GGCGAAATCAGCGGGCCTTTGGCTACGACATGTATTCAGAGCCCAGGCGTCGGCGGGCGATTGATTGGGCAACCGAAACA
GGTAACGCTGCTATTTCCGGCAAAATTACCCTGGTACAGGAAACCGGCGAAGATCTCCAGGCCGGTTTCCTCATGTATCT
GCCACTCTACGCACGGGACAATGCGCCAAGCGGTGATACTTTGCTTGGCACTGTTTATGCGGCGTTTAGGATGGACGACC
TGATTCGTGGCATCCTGGGTAATCGATTTACCCAGTTACAGCTGGAGATTTTTGATGGTGGCGAGTTAATCGAAGATAAC
CTGATGTTTCGTTCTCCACGGGCTGATAGCTGGCGTCTTCAAACTGAGTTGCCCATTGAAATGGGGGGGCAGAAGTGGTT
GCTTCATGTGGGAAGTAATGAAGATTTTCTTAGTCAGTCGGAAGCGTTTCAGAGCCAATTAATGCTTTTTATGGCTGTCG
TTTTTCAGCTGTTAATGTTCTATTTTCTCCTCAGTATCGCTAAAGCCAGACATCAGGAAAGCCTGCTCTCGCGGGAGATA
ATGAACAATGAAAGCCGATTCAGATTGGTGGTGGAAGCATCGCCCAGCGCCCTTATTATCACCAACAGGCGCGGTGTGAT
TACTTTGGTGAACAAGCACACAGAGCAGCTATTTGGCTATACCAGGGAAGAACTGCTGGGTAAGAGTGTGAATGTACTTT
TGCCCGAAGCATTGGCAAAGGTGCATCAGGGGCATATGGAGTCCTATCTGGCCAATCCCATTGCCAAGAAAATGTCGCTC
AGGGATGAACTCTATGGCAGAACCAAATCCGGCGGTTTGGTACCTGTGGAAGTCGGTCTGACACCTATTCATTTTGCTTC
CGGAATTTCGGTGCTGGCCACCATTAACGATATTTCGGTGCGTCGAAATATTGAGGAGCAAAGGATGGCCCATACGCTGG
AGCTGGAGCGTATCAATAAAGAACTCGACAGTTTTGCGTACATAGCCTCTCACGATCTCAAGTCACCCCTGCGGGGGATT
GAGCAACTTGCACAATGGATAGAAGAAGATCTAAAGGGCAAGTTGGACCCGTCCACCGGCAAGTATCTGCAGCTCATTCA
AAGCCGTATCCAGCGCATGTCTCAGCTGCTGGATGGTCTGTTGCTTTACTCACGCATTGGTCGGGCCGAGGAGTCCTTCT
CACCGGTGGAGGTCAAATCCCTCATCAAAGACATCTTTACCCTGGTGGCACCACCTGTTGGTTTTAATCTTAAACTCTGT
GGTGAGTTTTCCACTATCAACACCGCCAAAGTGCCGCTGGAGCTGGTGATAAGAAACCTCTTCTCCAACGCCATCAAGCA
CCACGATAAGGGTGAGGGAGAAATCAGTGTCAGTGTCGAAAGTTGCGGTGACATGCTGAAGTTCTGTGTGGCCGATGATG
GGCCAGGGATCCCAGCCGAGTATCAGGAGAAAGTCTTCAATATTTTTCAAACACTCAAAGCACGGGATGAAGTCGAAGGC
TGTGGATTGGGCTTATCACTGGTGCGCAAAACCGTAGAACGCTATGGCGGCAAGGTCTGGCTGATTTCTCAGGGGAGAGG
ATGTCAGTTCTGGTTCTCATGGCCAAAACAATTGGGGGCGCAAAAAGCATGA

Upstream 100 bases:

>100_bases
GACTCTAGCCATTTAAAATCAAGGATGATTTAAGGTGAATTCCCAGGCAGCAACCAAAGACCCCACTCGATTTCATCTCC
CACTTTTTGTGTGGGGGGTG

Downstream 100 bases:

>100_bases
CAGACGCGCAATACCGTGAAGTGGTGCTGTTTCTTGTGGACGACGACGACGTGGATTACATGGCGGTGGAACGCGCGATG
CGTCAAATGCGCCTGCTGAA

Product: sensory box histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 683; Mature: 683

Protein sequence:

>683_residues
MLVSMAFAFTGWYQFHQYINDLKEERFEDMAQELKLAIETRMLAYEQVLRSGVGLFKASNGVSRSEWRTYVANAKLDKYY
PGIQGVGFSQVVRKPQLQAFEAAVRAEGFPAFKVYPDGDRPIYHSILYLEPFDWRNQRAFGYDMYSEPRRRRAIDWATET
GNAAISGKITLVQETGEDLQAGFLMYLPLYARDNAPSGDTLLGTVYAAFRMDDLIRGILGNRFTQLQLEIFDGGELIEDN
LMFRSPRADSWRLQTELPIEMGGQKWLLHVGSNEDFLSQSEAFQSQLMLFMAVVFQLLMFYFLLSIAKARHQESLLSREI
MNNESRFRLVVEASPSALIITNRRGVITLVNKHTEQLFGYTREELLGKSVNVLLPEALAKVHQGHMESYLANPIAKKMSL
RDELYGRTKSGGLVPVEVGLTPIHFASGISVLATINDISVRRNIEEQRMAHTLELERINKELDSFAYIASHDLKSPLRGI
EQLAQWIEEDLKGKLDPSTGKYLQLIQSRIQRMSQLLDGLLLYSRIGRAEESFSPVEVKSLIKDIFTLVAPPVGFNLKLC
GEFSTINTAKVPLELVIRNLFSNAIKHHDKGEGEISVSVESCGDMLKFCVADDGPGIPAEYQEKVFNIFQTLKARDEVEG
CGLGLSLVRKTVERYGGKVWLISQGRGCQFWFSWPKQLGAQKA

Sequences:

>Translated_683_residues
MLVSMAFAFTGWYQFHQYINDLKEERFEDMAQELKLAIETRMLAYEQVLRSGVGLFKASNGVSRSEWRTYVANAKLDKYY
PGIQGVGFSQVVRKPQLQAFEAAVRAEGFPAFKVYPDGDRPIYHSILYLEPFDWRNQRAFGYDMYSEPRRRRAIDWATET
GNAAISGKITLVQETGEDLQAGFLMYLPLYARDNAPSGDTLLGTVYAAFRMDDLIRGILGNRFTQLQLEIFDGGELIEDN
LMFRSPRADSWRLQTELPIEMGGQKWLLHVGSNEDFLSQSEAFQSQLMLFMAVVFQLLMFYFLLSIAKARHQESLLSREI
MNNESRFRLVVEASPSALIITNRRGVITLVNKHTEQLFGYTREELLGKSVNVLLPEALAKVHQGHMESYLANPIAKKMSL
RDELYGRTKSGGLVPVEVGLTPIHFASGISVLATINDISVRRNIEEQRMAHTLELERINKELDSFAYIASHDLKSPLRGI
EQLAQWIEEDLKGKLDPSTGKYLQLIQSRIQRMSQLLDGLLLYSRIGRAEESFSPVEVKSLIKDIFTLVAPPVGFNLKLC
GEFSTINTAKVPLELVIRNLFSNAIKHHDKGEGEISVSVESCGDMLKFCVADDGPGIPAEYQEKVFNIFQTLKARDEVEG
CGLGLSLVRKTVERYGGKVWLISQGRGCQFWFSWPKQLGAQKA
>Mature_683_residues
MLVSMAFAFTGWYQFHQYINDLKEERFEDMAQELKLAIETRMLAYEQVLRSGVGLFKASNGVSRSEWRTYVANAKLDKYY
PGIQGVGFSQVVRKPQLQAFEAAVRAEGFPAFKVYPDGDRPIYHSILYLEPFDWRNQRAFGYDMYSEPRRRRAIDWATET
GNAAISGKITLVQETGEDLQAGFLMYLPLYARDNAPSGDTLLGTVYAAFRMDDLIRGILGNRFTQLQLEIFDGGELIEDN
LMFRSPRADSWRLQTELPIEMGGQKWLLHVGSNEDFLSQSEAFQSQLMLFMAVVFQLLMFYFLLSIAKARHQESLLSREI
MNNESRFRLVVEASPSALIITNRRGVITLVNKHTEQLFGYTREELLGKSVNVLLPEALAKVHQGHMESYLANPIAKKMSL
RDELYGRTKSGGLVPVEVGLTPIHFASGISVLATINDISVRRNIEEQRMAHTLELERINKELDSFAYIASHDLKSPLRGI
EQLAQWIEEDLKGKLDPSTGKYLQLIQSRIQRMSQLLDGLLLYSRIGRAEESFSPVEVKSLIKDIFTLVAPPVGFNLKLC
GEFSTINTAKVPLELVIRNLFSNAIKHHDKGEGEISVSVESCGDMLKFCVADDGPGIPAEYQEKVFNIFQTLKARDEVEG
CGLGLSLVRKTVERYGGKVWLISQGRGCQFWFSWPKQLGAQKA

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI48994928, Length=364, Percent_Identity=25.8241758241758, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI1788549, Length=362, Percent_Identity=24.585635359116, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI1790436, Length=264, Percent_Identity=28.030303030303, Blast_Score=74, Evalue=4e-14,
Organism=Escherichia coli, GI1786912, Length=239, Percent_Identity=26.7782426778243, Blast_Score=73, Evalue=6e-14,
Organism=Escherichia coli, GI1789149, Length=233, Percent_Identity=28.755364806867, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1786600, Length=385, Percent_Identity=25.974025974026, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1787894, Length=183, Percent_Identity=29.5081967213115, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI1790300, Length=221, Percent_Identity=28.0542986425339, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1790861, Length=225, Percent_Identity=27.1111111111111, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI145693157, Length=266, Percent_Identity=26.6917293233083, Blast_Score=66, Evalue=6e-12,
Organism=Escherichia coli, GI87082128, Length=214, Percent_Identity=24.7663551401869, Blast_Score=66, Evalue=9e-12,
Organism=Escherichia coli, GI1790346, Length=217, Percent_Identity=27.6497695852535, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 77345; Mature: 77345

Theoretical pI: Translated: 6.66; Mature: 6.66

Prosite motif: PS50839 CHASE ; PS50112 PAS ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVSMAFAFTGWYQFHQYINDLKEERFEDMAQELKLAIETRMLAYEQVLRSGVGLFKASN
CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCC
GVSRSEWRTYVANAKLDKYYPGIQGVGFSQVVRKPQLQAFEAAVRAEGFPAFKVYPDGDR
CCCHHHHHHHHHCCCHHHHCCCCCCCCHHHHHCCCHHHHHHHHHHCCCCCEEEEECCCCC
PIYHSILYLEPFDWRNQRAFGYDMYSEPRRRRAIDWATETGNAAISGKITLVQETGEDLQ
CHHHEEEEECCCCCCCCCCCCCCHHCCHHHHHCCEEECCCCCEEEEEEEEEEECCCCHHH
AGFLMYLPLYARDNAPSGDTLLGTVYAAFRMDDLIRGILGNRFTQLQLEIFDGGELIEDN
CCHHHEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCHHCC
LMFRSPRADSWRLQTELPIEMGGQKWLLHVGSNEDFLSQSEAFQSQLMLFMAVVFQLLMF
CEECCCCCCCEEEEEECCCEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
YFLLSIAKARHQESLLSREIMNNESRFRLVVEASPSALIITNRRGVITLVNKHTEQLFGY
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEECCCCEEEEHHHHHHHHHCC
TREELLGKSVNVLLPEALAKVHQGHMESYLANPIAKKMSLRDELYGRTKSGGLVPVEVGL
CHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCC
TPIHFASGISVLATINDISVRRNIEEQRMAHTLELERINKELDSFAYIASHDLKSPLRGI
CHHHHHCCCEEEEEHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EQLAQWIEEDLKGKLDPSTGKYLQLIQSRIQRMSQLLDGLLLYSRIGRAEESFSPVEVKS
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
LIKDIFTLVAPPVGFNLKLCGEFSTINTAKVPLELVIRNLFSNAIKHHDKGEGEISVSVE
HHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHH
SCGDMLKFCVADDGPGIPAEYQEKVFNIFQTLKARDEVEGCGLGLSLVRKTVERYGGKVW
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCEEE
LISQGRGCQFWFSWPKQLGAQKA
EEECCCCCEEEECCHHHCCCCCC
>Mature Secondary Structure
MLVSMAFAFTGWYQFHQYINDLKEERFEDMAQELKLAIETRMLAYEQVLRSGVGLFKASN
CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCC
GVSRSEWRTYVANAKLDKYYPGIQGVGFSQVVRKPQLQAFEAAVRAEGFPAFKVYPDGDR
CCCHHHHHHHHHCCCHHHHCCCCCCCCHHHHHCCCHHHHHHHHHHCCCCCEEEEECCCCC
PIYHSILYLEPFDWRNQRAFGYDMYSEPRRRRAIDWATETGNAAISGKITLVQETGEDLQ
CHHHEEEEECCCCCCCCCCCCCCHHCCHHHHHCCEEECCCCCEEEEEEEEEEECCCCHHH
AGFLMYLPLYARDNAPSGDTLLGTVYAAFRMDDLIRGILGNRFTQLQLEIFDGGELIEDN
CCHHHEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCHHCC
LMFRSPRADSWRLQTELPIEMGGQKWLLHVGSNEDFLSQSEAFQSQLMLFMAVVFQLLMF
CEECCCCCCCEEEEEECCCEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
YFLLSIAKARHQESLLSREIMNNESRFRLVVEASPSALIITNRRGVITLVNKHTEQLFGY
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEECCCCEEEEHHHHHHHHHCC
TREELLGKSVNVLLPEALAKVHQGHMESYLANPIAKKMSLRDELYGRTKSGGLVPVEVGL
CHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCC
TPIHFASGISVLATINDISVRRNIEEQRMAHTLELERINKELDSFAYIASHDLKSPLRGI
CHHHHHCCCEEEEEHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EQLAQWIEEDLKGKLDPSTGKYLQLIQSRIQRMSQLLDGLLLYSRIGRAEESFSPVEVKS
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
LIKDIFTLVAPPVGFNLKLCGEFSTINTAKVPLELVIRNLFSNAIKHHDKGEGEISVSVE
HHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHH
SCGDMLKFCVADDGPGIPAEYQEKVFNIFQTLKARDEVEGCGLGLSLVRKTVERYGGKVW
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCEEE
LISQGRGCQFWFSWPKQLGAQKA
EEECCCCCEEEECCHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]