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The map label for this gene is lptC [H]

Identifier: 119776217

GI number: 119776217

Start: 3661569

End: 3662126

Strand: Direct

Name: lptC [H]

Synonym: Sama_3085

Alternate gene names: 119776217

Gene position: 3661569-3662126 (Clockwise)

Preceding gene: 119776216

Following gene: 119776218

Centisome position: 85.03

GC content: 49.82

Gene sequence:

>558_bases
ATGAATCGGGTCACACTCGCCATCATTTTGCTGTTCGGCACCGCCCTGACGCTTTACTGGCAGGTGCAAAGCAAAAAGGC
CAGTCAACCTCAGCTCACTGACAGTGTGCAAAAACCTGATTACGTGGCAACCGACCTTCGCAGCATCAGCTACAACGCCG
AGGGAAAATTAGAAAGCCGCGTCAGTGCCGCCTACATGGAACACTTCGATGGCGATGCACAAACCCTGTTTACCCAACCT
GTCTACACCCTGTTCCCTGAAGATGGTCAGGGTGAATGGCGCCTCACCGCCAAAACCGGCAGACTGGACAAGGCCAGTGA
CAAAGTCATGCTCGAAGACGAAGTACTGATCGAAGCTCTGACCATAGACGAGCCTTTGCAGCAGCTCAATACCAGTTATC
TGGAGTTGGATCTCAAGACGATGATCCTCACCTCCGACAAAGAAATTATAATCAGCGGCAATAACTTCCACTTGAGCGGC
CATGGTCTCTATGCTGATCTCAATGCCAAAGAAGTTAAGCTCTTAAGCAAGATTAAGGGAACCTATGAACCTAAATAA

Upstream 100 bases:

>100_bases
TGGTCACTACGCTGCCCGGTGGGCATGGTGCCCTCAGAGAACTTGCCGATCTCCTACTGATGAGCCAGGGTAAGTTCGAT
TCGGCCCACGGGATGAGCGT

Downstream 100 bases:

>100_bases
GTCGCTCATTCTGGTGCTGCTTTGCACCTGCAGCGCTGTGGCTTTGGCCAACACCAAGTTTGATTTGAGCCAGGAAGTCA
AAATTGCCGCAGCCAACAGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MNRVTLAIILLFGTALTLYWQVQSKKASQPQLTDSVQKPDYVATDLRSISYNAEGKLESRVSAAYMEHFDGDAQTLFTQP
VYTLFPEDGQGEWRLTAKTGRLDKASDKVMLEDEVLIEALTIDEPLQQLNTSYLELDLKTMILTSDKEIIISGNNFHLSG
HGLYADLNAKEVKLLSKIKGTYEPK

Sequences:

>Translated_185_residues
MNRVTLAIILLFGTALTLYWQVQSKKASQPQLTDSVQKPDYVATDLRSISYNAEGKLESRVSAAYMEHFDGDAQTLFTQP
VYTLFPEDGQGEWRLTAKTGRLDKASDKVMLEDEVLIEALTIDEPLQQLNTSYLELDLKTMILTSDKEIIISGNNFHLSG
HGLYADLNAKEVKLLSKIKGTYEPK
>Mature_185_residues
MNRVTLAIILLFGTALTLYWQVQSKKASQPQLTDSVQKPDYVATDLRSISYNAEGKLESRVSAAYMEHFDGDAQTLFTQP
VYTLFPEDGQGEWRLTAKTGRLDKASDKVMLEDEVLIEALTIDEPLQQLNTSYLELDLKTMILTSDKEIIISGNNFHLSG
HGLYADLNAKEVKLLSKIKGTYEPK

Specific function: Required for the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [H]

COG id: COG3117

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptC family [H]

Homologues:

Organism=Escherichia coli, GI1789591, Length=181, Percent_Identity=27.0718232044199, Blast_Score=79, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010664 [H]

Pfam domain/function: PF06835 DUF1239 [H]

EC number: NA

Molecular weight: Translated: 20776; Mature: 20776

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRVTLAIILLFGTALTLYWQVQSKKASQPQLTDSVQKPDYVATDLRSISYNAEGKLESR
CCHHHHHHHHHHHHHHEEEEEEECCCCCCCCCHHHCCCCCHHHHHHHHCCCCCCCCHHHH
VSAAYMEHFDGDAQTLFTQPVYTLFPEDGQGEWRLTAKTGRLDKASDKVMLEDEVLIEAL
HHHHHHHHCCCCCCEEEECCEEEECCCCCCCCEEEEEECCCCCCCCCCEEECHHHEEEEC
TIDEPLQQLNTSYLELDLKTMILTSDKEIIISGNNFHLSGHGLYADLNAKEVKLLSKIKG
CCHHHHHHHCCCEEEEEEEEEEEECCCEEEEECCEEEEECCCEEEECCHHHHHHHHHHCC
TYEPK
CCCCC
>Mature Secondary Structure
MNRVTLAIILLFGTALTLYWQVQSKKASQPQLTDSVQKPDYVATDLRSISYNAEGKLESR
CCHHHHHHHHHHHHHHEEEEEEECCCCCCCCCHHHCCCCCHHHHHHHHCCCCCCCCHHHH
VSAAYMEHFDGDAQTLFTQPVYTLFPEDGQGEWRLTAKTGRLDKASDKVMLEDEVLIEAL
HHHHHHHHCCCCCCEEEECCEEEECCCCCCCCEEEEEECCCCCCCCCCEEECHHHEEEEC
TIDEPLQQLNTSYLELDLKTMILTSDKEIIISGNNFHLSGHGLYADLNAKEVKLLSKIKG
CCHHHHHHHCCCEEEEEEEEEEEECCCEEEEECCEEEEECCCEEEECCHHHHHHHHHHCC
TYEPK
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]