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The map label for this gene is ydiY [C]

Identifier: 119776197

GI number: 119776197

Start: 3642507

End: 3643253

Strand: Direct

Name: ydiY [C]

Synonym: Sama_3065

Alternate gene names: 119776197

Gene position: 3642507-3643253 (Clockwise)

Preceding gene: 119776192

Following gene: 119776205

Centisome position: 84.59

GC content: 51.94

Gene sequence:

>747_bases
ATGATAAACAAACGCATCCTCTCCATCGGCTGCCTGCTGTTAAGCTTCCAGACGCAGGCACTTGTACCGCCCCAGTATCA
GGAACCCGCCACAGGGCTGACCGCAGAAGTGGAAGCTGGCCTCCAGCTCAATACGGGTAACACGCAGTCCACCAGTTTTA
ACGGTCGCACCAGGCTGATATACGACACCAAAAAAGCCAAACAGGAAGCTTTGTTGAAGGCCTATTTTGCGTCCGATTCA
GAAAAAACCACCGCAGAGAAGTACGACGTCCAATTGCAGTCAAACTACAAGGTCGATTCCGGTTACTTCTTTGGCCGCGG
TGAAGGTACCTGGGATGAGTTTGGCTCATACACCCGCCTGTACACGGGTTCTGTGGGTTACGGTTTTGATGCTATCAGCA
GCTACGCCACCAAACTTAAACTCGAAATCGGCCCCGGTTATCAATACAGCCTGGCGAAAGCCACAACCACCGAACCAGAC
CCGGATGCCAACACAGATGTCATTGTACGGGCCGCCGCCAAGTTTGAGCAGCGAATTCATGAGTACAGCAGCTTTACGGC
CGACCTCACCGCAGAGACTGGGCAAAACAATAGCGCGGTGACACTCGATATGGGTTACAAGAATATCCTGTTTCAGGACT
TGGCCTTTAAAGTGGGCATGAACGTGAAATACACAGAAGTGGTGCCCGATGGCACAGAGCAGGTCGATACGGTCACCACC
TTTAACCTGCTCTATACCTTCCAGTAA

Upstream 100 bases:

>100_bases
GCAATAACTTTGTTCTGGCCACCATCAAAGGTATGATTGCCCGTCGCATCTTCGCCCGGGAGTCCGGGCCTGTAGTCAAA
CCGGGAATACAGGCTGAATA

Downstream 100 bases:

>100_bases
GCAATAATCACCCACAGTTTCCATCAATAAAAAAGGATTGCCTGGGCAATCCTTTTTTATTTGATAAACACCTTGCGGCG
GGAAGGTTATCCCAACCGCT

Product: putative salt-induced outer membrane protein

Products: NA

Alternate protein names: Outer Membrane Protein

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MINKRILSIGCLLLSFQTQALVPPQYQEPATGLTAEVEAGLQLNTGNTQSTSFNGRTRLIYDTKKAKQEALLKAYFASDS
EKTTAEKYDVQLQSNYKVDSGYFFGRGEGTWDEFGSYTRLYTGSVGYGFDAISSYATKLKLEIGPGYQYSLAKATTTEPD
PDANTDVIVRAAAKFEQRIHEYSSFTADLTAETGQNNSAVTLDMGYKNILFQDLAFKVGMNVKYTEVVPDGTEQVDTVTT
FNLLYTFQ

Sequences:

>Translated_248_residues
MINKRILSIGCLLLSFQTQALVPPQYQEPATGLTAEVEAGLQLNTGNTQSTSFNGRTRLIYDTKKAKQEALLKAYFASDS
EKTTAEKYDVQLQSNYKVDSGYFFGRGEGTWDEFGSYTRLYTGSVGYGFDAISSYATKLKLEIGPGYQYSLAKATTTEPD
PDANTDVIVRAAAKFEQRIHEYSSFTADLTAETGQNNSAVTLDMGYKNILFQDLAFKVGMNVKYTEVVPDGTEQVDTVTT
FNLLYTFQ
>Mature_248_residues
MINKRILSIGCLLLSFQTQALVPPQYQEPATGLTAEVEAGLQLNTGNTQSTSFNGRTRLIYDTKKAKQEALLKAYFASDS
EKTTAEKYDVQLQSNYKVDSGYFFGRGEGTWDEFGSYTRLYTGSVGYGFDAISSYATKLKLEIGPGYQYSLAKATTTEPD
PDANTDVIVRAAAKFEQRIHEYSSFTADLTAETGQNNSAVTLDMGYKNILFQDLAFKVGMNVKYTEVVPDGTEQVDTVTT
FNLLYTFQ

Specific function: Unknown

COG id: COG3137

COG function: function code M; Putative salt-induced outer membrane protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27480; Mature: 27480

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINKRILSIGCLLLSFQTQALVPPQYQEPATGLTAEVEAGLQLNTGNTQSTSFNGRTRLI
CCCCHHHHHHHEEEECCCCCCCCCCCCCCCCCCEEEEECCEEEECCCCCCCCCCCCEEEE
YDTKKAKQEALLKAYFASDSEKTTAEKYDVQLQSNYKVDSGYFFGRGEGTWDEFGSYTRL
EECHHHHHHHHHHHHHCCCCCCCCHHHEEEEEECCEEECCCEEEECCCCCHHHHCCEEEE
YTGSVGYGFDAISSYATKLKLEIGPGYQYSLAKATTTEPDPDANTDVIVRAAAKFEQRIH
EECCCCCCHHHHHHCEEEEEEEECCCCEEEEEECCCCCCCCCCCCCEEEEHHHHHHHHHH
EYSSFTADLTAETGQNNSAVTLDMGYKNILFQDLAFKVGMNVKYTEVVPDGTEQVDTVTT
HHHCCEEEEEECCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHEEEE
FNLLYTFQ
EEEEEEEC
>Mature Secondary Structure
MINKRILSIGCLLLSFQTQALVPPQYQEPATGLTAEVEAGLQLNTGNTQSTSFNGRTRLI
CCCCHHHHHHHEEEECCCCCCCCCCCCCCCCCCEEEEECCEEEECCCCCCCCCCCCEEEE
YDTKKAKQEALLKAYFASDSEKTTAEKYDVQLQSNYKVDSGYFFGRGEGTWDEFGSYTRL
EECHHHHHHHHHHHHHCCCCCCCCHHHEEEEEECCEEECCCEEEECCCCCHHHHCCEEEE
YTGSVGYGFDAISSYATKLKLEIGPGYQYSLAKATTTEPDPDANTDVIVRAAAKFEQRIH
EECCCCCCHHHHHHCEEEEEEEECCCCEEEEEECCCCCCCCCCCCCEEEEHHHHHHHHHH
EYSSFTADLTAETGQNNSAVTLDMGYKNILFQDLAFKVGMNVKYTEVVPDGTEQVDTVTT
HHHCCEEEEEECCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHEEEE
FNLLYTFQ
EEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA