Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119776191

Identifier: 119776191

GI number: 119776191

Start: 3635277

End: 3637466

Strand: Direct

Name: 119776191

Synonym: Sama_3059

Alternate gene names: NA

Gene position: 3635277-3637466 (Clockwise)

Preceding gene: 119776188

Following gene: 119776192

Centisome position: 84.42

GC content: 53.74

Gene sequence:

>2190_bases
ATGCGCAACCTAGTGGCAGCGGCTCTGGTGCTTTCTTCCGGAGTGGCACTCGCCGACGAAGGCCAGTGGCAACCTTATCA
AATGCCTTCCATCGCAGACAAACTCAAAGCCCGCGGTATAGACATCCCAGCAGAGCAGTTGGCCGACTTAAGCCGCTATC
CCATGAACGCCGTGGTGGGGCTGGGCTATTGTACCGCCAGTTTTGTATCCCCCCAAGGGCTGGCGGTGACAAATCATCAC
TGCGCATTCAGAGCCATTCAATATAACAGCAGTAAAGAGAAAAACTATCTTGCCGATGGCTTCCTGGCGACCAGCATGGA
TAAAGAGCCTTCCGCTGGCCCCAACGAGCGCCTGTACGTGACCGAAGCCGTGACAGATGTCAGCGCGCAAATCCGTGACG
CCCTGCCGGAAGAGCCGCTGGCCCGTGTTGAAGCCATTGAAAATCGTCAAAAAGCGCTCATCAAAGAGTGTGAGAGTGAC
GATAACTACCGCTGCTCGGTCAGAAGCTTCCACAACGGGCTGGAATACTACCTTATCAAGCAGTTGATGATCCGCGATGT
ACGCCTCGTCTACGCGCCTCCTGAAAGTGTTGGTGGCTACGGCGGCGATATCGACAACTACGAATACCCTCGCCACAGCG
GCGATTTCACCTTCCTGCGTGCCTATGTTGGTAAAGATGGCAAACCGGCACCTTACGCTGAAGACAACGTGCCATATCAG
CCAAAAAGCTTCCTCAAAATTAACGCCAGCGGCGTGAAGGCCGGTGATGGTGTATTTGCAGCAGGCTATCCAGGCTCAAC
CAGCCGCTACCGTTTGACCACCGAACTTGAGTTTGCCAGCGACTGGCTCTACCCCACCCAGGCCAAACGCTTCCAGGCCC
GCATCGATACCATCGAAGCCATGGGCGCTGCCGACACTGAATTGGCCATCAAGTACGCAGGTACCGTGGCAGGCATGGCC
AACCGCATGAAGAAGCTTAACGGTCTGCTCGACGGCTTTAAGGCCACCGACATTGCCGCCATCAAGCAGCAACGTGAAGA
TGCCTTTATGACCTGGTATGCCAGCCATGGCGATGCCAAGCAGATGGATGAGCTCAAGGCACTGATTAAAGAAGGCCAAA
CTCAGTATCAGACCACCTACTACTTCAACAATGCTCAATCGAGCGATCTGCTCACTGCAGCAAACAGCCTGTATCGCCTG
GCCAAAGAGAAACAAAAAGCCGATGCCGACCGTGAGCTGGGCTATCAGGAACGGGACATGAAGATGTTCGCCGATCGCCT
GAAACGTATCGATTCAAGCTTCGACGTTAAAGTCGACAAGGTGCTGTGGCAGGCGGATATCGAAGAGTATCTCGGTCAAA
ACCAGCGCGTCGATGTGTTGGATAAGATGCTGACAGTTAAAGAAGGACAGGATCTGTCATCCATGCTGGATGGACTCTAT
GCAGCCACCGGCCTCACCGACCAGGCCACGCGCCTTGGGTGGATGGACAAAACCCCGGCGGACTTTGAAGCCAGTGACGA
TCCTTTTATCAAACTGGCAGTGGCGCTCTACGACACCCGTATGGCCCAGGAAAAAGCGGAAAAAACGCTGGATGGTAAGC
TCAGTATTGCCCGCCCGGCGATGATGCAGGCCGTGATTGCCTACAACAAGGATAAAGGCTGGCCAGTATACCCGGATGCC
AACGGCACTCTGCGTATCACCTACGGTATGGTAGATGGCTATCAGTCACGTGATGCACTCTACAAGCAGCCCTTCACCCG
TCTGGAAGGCATAGTAGCCAAACACACTGGCGTAGAGCCATTTAACGCGCCACAAAAGGTGCTGGATGCCATCAAGCGTG
GTGACATGGGCAAACATAATGTGGATGACCTCTACCCAGACGCCCGCAGTTTTATGTGTAAGCTGTTCTCTTGCCTGGAT
AAACCCGAAGCCTTTAATTCGGTACCGGTCAACTTCCTGTCCAGCGTAGACACCACGGGCGGCAACTCAGGCTCTCCGGT
ATTCAATGGTCGTGGTGAATTGGTGGGGCTCAACTTTGATTCCACCTATGAAGCCATCACCAAAGACTGGTTCTTCAACC
CTGAAATCACCCGTGCAGTCCATGTGGATGTTCGCTATATCCTGTGGATGATGGACAAGGTGGATAACGCGCAGAATTTG
TTACAGGAACTCACCCTGGTAACTAATTGA

Upstream 100 bases:

>100_bases
GATTTGCAAAATATGGTATAAAACTCACCGACTTTGGCATCACCAAAGCCAAACGCATCCCATCCACGATGGACTCACGA
ACAATAATTAAGGAATCAAC

Downstream 100 bases:

>100_bases
TAATTAAAATTATAAAAAAAGGCCGCCTTCTAAAGTGGCCTTTTTTATTTCCAAATACACAACCTGAATCATAAATTAAC
ATTGATATAACTTTTAAGTA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 729; Mature: 729

Protein sequence:

>729_residues
MRNLVAAALVLSSGVALADEGQWQPYQMPSIADKLKARGIDIPAEQLADLSRYPMNAVVGLGYCTASFVSPQGLAVTNHH
CAFRAIQYNSSKEKNYLADGFLATSMDKEPSAGPNERLYVTEAVTDVSAQIRDALPEEPLARVEAIENRQKALIKECESD
DNYRCSVRSFHNGLEYYLIKQLMIRDVRLVYAPPESVGGYGGDIDNYEYPRHSGDFTFLRAYVGKDGKPAPYAEDNVPYQ
PKSFLKINASGVKAGDGVFAAGYPGSTSRYRLTTELEFASDWLYPTQAKRFQARIDTIEAMGAADTELAIKYAGTVAGMA
NRMKKLNGLLDGFKATDIAAIKQQREDAFMTWYASHGDAKQMDELKALIKEGQTQYQTTYYFNNAQSSDLLTAANSLYRL
AKEKQKADADRELGYQERDMKMFADRLKRIDSSFDVKVDKVLWQADIEEYLGQNQRVDVLDKMLTVKEGQDLSSMLDGLY
AATGLTDQATRLGWMDKTPADFEASDDPFIKLAVALYDTRMAQEKAEKTLDGKLSIARPAMMQAVIAYNKDKGWPVYPDA
NGTLRITYGMVDGYQSRDALYKQPFTRLEGIVAKHTGVEPFNAPQKVLDAIKRGDMGKHNVDDLYPDARSFMCKLFSCLD
KPEAFNSVPVNFLSSVDTTGGNSGSPVFNGRGELVGLNFDSTYEAITKDWFFNPEITRAVHVDVRYILWMMDKVDNAQNL
LQELTLVTN

Sequences:

>Translated_729_residues
MRNLVAAALVLSSGVALADEGQWQPYQMPSIADKLKARGIDIPAEQLADLSRYPMNAVVGLGYCTASFVSPQGLAVTNHH
CAFRAIQYNSSKEKNYLADGFLATSMDKEPSAGPNERLYVTEAVTDVSAQIRDALPEEPLARVEAIENRQKALIKECESD
DNYRCSVRSFHNGLEYYLIKQLMIRDVRLVYAPPESVGGYGGDIDNYEYPRHSGDFTFLRAYVGKDGKPAPYAEDNVPYQ
PKSFLKINASGVKAGDGVFAAGYPGSTSRYRLTTELEFASDWLYPTQAKRFQARIDTIEAMGAADTELAIKYAGTVAGMA
NRMKKLNGLLDGFKATDIAAIKQQREDAFMTWYASHGDAKQMDELKALIKEGQTQYQTTYYFNNAQSSDLLTAANSLYRL
AKEKQKADADRELGYQERDMKMFADRLKRIDSSFDVKVDKVLWQADIEEYLGQNQRVDVLDKMLTVKEGQDLSSMLDGLY
AATGLTDQATRLGWMDKTPADFEASDDPFIKLAVALYDTRMAQEKAEKTLDGKLSIARPAMMQAVIAYNKDKGWPVYPDA
NGTLRITYGMVDGYQSRDALYKQPFTRLEGIVAKHTGVEPFNAPQKVLDAIKRGDMGKHNVDDLYPDARSFMCKLFSCLD
KPEAFNSVPVNFLSSVDTTGGNSGSPVFNGRGELVGLNFDSTYEAITKDWFFNPEITRAVHVDVRYILWMMDKVDNAQNL
LQELTLVTN
>Mature_729_residues
MRNLVAAALVLSSGVALADEGQWQPYQMPSIADKLKARGIDIPAEQLADLSRYPMNAVVGLGYCTASFVSPQGLAVTNHH
CAFRAIQYNSSKEKNYLADGFLATSMDKEPSAGPNERLYVTEAVTDVSAQIRDALPEEPLARVEAIENRQKALIKECESD
DNYRCSVRSFHNGLEYYLIKQLMIRDVRLVYAPPESVGGYGGDIDNYEYPRHSGDFTFLRAYVGKDGKPAPYAEDNVPYQ
PKSFLKINASGVKAGDGVFAAGYPGSTSRYRLTTELEFASDWLYPTQAKRFQARIDTIEAMGAADTELAIKYAGTVAGMA
NRMKKLNGLLDGFKATDIAAIKQQREDAFMTWYASHGDAKQMDELKALIKEGQTQYQTTYYFNNAQSSDLLTAANSLYRL
AKEKQKADADRELGYQERDMKMFADRLKRIDSSFDVKVDKVLWQADIEEYLGQNQRVDVLDKMLTVKEGQDLSSMLDGLY
AATGLTDQATRLGWMDKTPADFEASDDPFIKLAVALYDTRMAQEKAEKTLDGKLSIARPAMMQAVIAYNKDKGWPVYPDA
NGTLRITYGMVDGYQSRDALYKQPFTRLEGIVAKHTGVEPFNAPQKVLDAIKRGDMGKHNVDDLYPDARSFMCKLFSCLD
KPEAFNSVPVNFLSSVDTTGGNSGSPVFNGRGELVGLNFDSTYEAITKDWFFNPEITRAVHVDVRYILWMMDKVDNAQNL
LQELTLVTN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 81296; Mature: 81296

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: PS00673 V8_SER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNLVAAALVLSSGVALADEGQWQPYQMPSIADKLKARGIDIPAEQLADLSRYPMNAVVG
CCHHHHHHHHHHCCCEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHH
LGYCTASFVSPQGLAVTNHHCAFRAIQYNSSKEKNYLADGFLATSMDKEPSAGPNERLYV
HHHHHHHHCCCCCCEEECCCEEEEEEECCCCCCCCHHHCCHHEECCCCCCCCCCCCEEEE
TEAVTDVSAQIRDALPEEPLARVEAIENRQKALIKECESDDNYRCSVRSFHNGLEYYLIK
EHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHCCHHHHHHH
QLMIRDVRLVYAPPESVGGYGGDIDNYEYPRHSGDFTFLRAYVGKDGKPAPYAEDNVPYQ
HHHHHCCEEEECCCHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCC
PKSFLKINASGVKAGDGVFAAGYPGSTSRYRLTTELEFASDWLYPTQAKRFQARIDTIEA
CCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEEEEEHHHCCCCCCHHHHHHHHHHHHHH
MGAADTELAIKYAGTVAGMANRMKKLNGLLDGFKATDIAAIKQQREDAFMTWYASHGDAK
CCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEEECCCCHH
QMDELKALIKEGQTQYQTTYYFNNAQSSDLLTAANSLYRLAKEKQKADADRELGYQERDM
HHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHH
KMFADRLKRIDSSFDVKVDKVLWQADIEEYLGQNQRVDVLDKMLTVKEGQDLSSMLDGLY
HHHHHHHHHCCCCCCEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHH
AATGLTDQATRLGWMDKTPADFEASDDPFIKLAVALYDTRMAQEKAEKTLDGKLSIARPA
HHCCCCHHHHHCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHH
MMQAVIAYNKDKGWPVYPDANGTLRITYGMVDGYQSRDALYKQPFTRLEGIVAKHTGVEP
HHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHCHHHHHHHHHHHCCCCCC
FNAPQKVLDAIKRGDMGKHNVDDLYPDARSFMCKLFSCLDKPEAFNSVPVNFLSSVDTTG
CCCHHHHHHHHHCCCCCCCCCHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCC
GNSGSPVFNGRGELVGLNFDSTYEAITKDWFFNPEITRAVHVDVRYILWMMDKVDNAQNL
CCCCCCCCCCCCCEEEECCCCHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHCCCHHHH
LQELTLVTN
HHHHHHHCC
>Mature Secondary Structure
MRNLVAAALVLSSGVALADEGQWQPYQMPSIADKLKARGIDIPAEQLADLSRYPMNAVVG
CCHHHHHHHHHHCCCEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHH
LGYCTASFVSPQGLAVTNHHCAFRAIQYNSSKEKNYLADGFLATSMDKEPSAGPNERLYV
HHHHHHHHCCCCCCEEECCCEEEEEEECCCCCCCCHHHCCHHEECCCCCCCCCCCCEEEE
TEAVTDVSAQIRDALPEEPLARVEAIENRQKALIKECESDDNYRCSVRSFHNGLEYYLIK
EHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHCCHHHHHHH
QLMIRDVRLVYAPPESVGGYGGDIDNYEYPRHSGDFTFLRAYVGKDGKPAPYAEDNVPYQ
HHHHHCCEEEECCCHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCC
PKSFLKINASGVKAGDGVFAAGYPGSTSRYRLTTELEFASDWLYPTQAKRFQARIDTIEA
CCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEEEEEHHHCCCCCCHHHHHHHHHHHHHH
MGAADTELAIKYAGTVAGMANRMKKLNGLLDGFKATDIAAIKQQREDAFMTWYASHGDAK
CCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEEECCCCHH
QMDELKALIKEGQTQYQTTYYFNNAQSSDLLTAANSLYRLAKEKQKADADRELGYQERDM
HHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHH
KMFADRLKRIDSSFDVKVDKVLWQADIEEYLGQNQRVDVLDKMLTVKEGQDLSSMLDGLY
HHHHHHHHHCCCCCCEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHH
AATGLTDQATRLGWMDKTPADFEASDDPFIKLAVALYDTRMAQEKAEKTLDGKLSIARPA
HHCCCCHHHHHCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHH
MMQAVIAYNKDKGWPVYPDANGTLRITYGMVDGYQSRDALYKQPFTRLEGIVAKHTGVEP
HHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHCHHHHHHHHHHHCCCCCC
FNAPQKVLDAIKRGDMGKHNVDDLYPDARSFMCKLFSCLDKPEAFNSVPVNFLSSVDTTG
CCCHHHHHHHHHCCCCCCCCCHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCC
GNSGSPVFNGRGELVGLNFDSTYEAITKDWFFNPEITRAVHVDVRYILWMMDKVDNAQNL
CCCCCCCCCCCCCEEEECCCCHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHCCCHHHH
LQELTLVTN
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA