| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119776191
Identifier: 119776191
GI number: 119776191
Start: 3635277
End: 3637466
Strand: Direct
Name: 119776191
Synonym: Sama_3059
Alternate gene names: NA
Gene position: 3635277-3637466 (Clockwise)
Preceding gene: 119776188
Following gene: 119776192
Centisome position: 84.42
GC content: 53.74
Gene sequence:
>2190_bases ATGCGCAACCTAGTGGCAGCGGCTCTGGTGCTTTCTTCCGGAGTGGCACTCGCCGACGAAGGCCAGTGGCAACCTTATCA AATGCCTTCCATCGCAGACAAACTCAAAGCCCGCGGTATAGACATCCCAGCAGAGCAGTTGGCCGACTTAAGCCGCTATC CCATGAACGCCGTGGTGGGGCTGGGCTATTGTACCGCCAGTTTTGTATCCCCCCAAGGGCTGGCGGTGACAAATCATCAC TGCGCATTCAGAGCCATTCAATATAACAGCAGTAAAGAGAAAAACTATCTTGCCGATGGCTTCCTGGCGACCAGCATGGA TAAAGAGCCTTCCGCTGGCCCCAACGAGCGCCTGTACGTGACCGAAGCCGTGACAGATGTCAGCGCGCAAATCCGTGACG CCCTGCCGGAAGAGCCGCTGGCCCGTGTTGAAGCCATTGAAAATCGTCAAAAAGCGCTCATCAAAGAGTGTGAGAGTGAC GATAACTACCGCTGCTCGGTCAGAAGCTTCCACAACGGGCTGGAATACTACCTTATCAAGCAGTTGATGATCCGCGATGT ACGCCTCGTCTACGCGCCTCCTGAAAGTGTTGGTGGCTACGGCGGCGATATCGACAACTACGAATACCCTCGCCACAGCG GCGATTTCACCTTCCTGCGTGCCTATGTTGGTAAAGATGGCAAACCGGCACCTTACGCTGAAGACAACGTGCCATATCAG CCAAAAAGCTTCCTCAAAATTAACGCCAGCGGCGTGAAGGCCGGTGATGGTGTATTTGCAGCAGGCTATCCAGGCTCAAC CAGCCGCTACCGTTTGACCACCGAACTTGAGTTTGCCAGCGACTGGCTCTACCCCACCCAGGCCAAACGCTTCCAGGCCC GCATCGATACCATCGAAGCCATGGGCGCTGCCGACACTGAATTGGCCATCAAGTACGCAGGTACCGTGGCAGGCATGGCC AACCGCATGAAGAAGCTTAACGGTCTGCTCGACGGCTTTAAGGCCACCGACATTGCCGCCATCAAGCAGCAACGTGAAGA TGCCTTTATGACCTGGTATGCCAGCCATGGCGATGCCAAGCAGATGGATGAGCTCAAGGCACTGATTAAAGAAGGCCAAA CTCAGTATCAGACCACCTACTACTTCAACAATGCTCAATCGAGCGATCTGCTCACTGCAGCAAACAGCCTGTATCGCCTG GCCAAAGAGAAACAAAAAGCCGATGCCGACCGTGAGCTGGGCTATCAGGAACGGGACATGAAGATGTTCGCCGATCGCCT GAAACGTATCGATTCAAGCTTCGACGTTAAAGTCGACAAGGTGCTGTGGCAGGCGGATATCGAAGAGTATCTCGGTCAAA ACCAGCGCGTCGATGTGTTGGATAAGATGCTGACAGTTAAAGAAGGACAGGATCTGTCATCCATGCTGGATGGACTCTAT GCAGCCACCGGCCTCACCGACCAGGCCACGCGCCTTGGGTGGATGGACAAAACCCCGGCGGACTTTGAAGCCAGTGACGA TCCTTTTATCAAACTGGCAGTGGCGCTCTACGACACCCGTATGGCCCAGGAAAAAGCGGAAAAAACGCTGGATGGTAAGC TCAGTATTGCCCGCCCGGCGATGATGCAGGCCGTGATTGCCTACAACAAGGATAAAGGCTGGCCAGTATACCCGGATGCC AACGGCACTCTGCGTATCACCTACGGTATGGTAGATGGCTATCAGTCACGTGATGCACTCTACAAGCAGCCCTTCACCCG TCTGGAAGGCATAGTAGCCAAACACACTGGCGTAGAGCCATTTAACGCGCCACAAAAGGTGCTGGATGCCATCAAGCGTG GTGACATGGGCAAACATAATGTGGATGACCTCTACCCAGACGCCCGCAGTTTTATGTGTAAGCTGTTCTCTTGCCTGGAT AAACCCGAAGCCTTTAATTCGGTACCGGTCAACTTCCTGTCCAGCGTAGACACCACGGGCGGCAACTCAGGCTCTCCGGT ATTCAATGGTCGTGGTGAATTGGTGGGGCTCAACTTTGATTCCACCTATGAAGCCATCACCAAAGACTGGTTCTTCAACC CTGAAATCACCCGTGCAGTCCATGTGGATGTTCGCTATATCCTGTGGATGATGGACAAGGTGGATAACGCGCAGAATTTG TTACAGGAACTCACCCTGGTAACTAATTGA
Upstream 100 bases:
>100_bases GATTTGCAAAATATGGTATAAAACTCACCGACTTTGGCATCACCAAAGCCAAACGCATCCCATCCACGATGGACTCACGA ACAATAATTAAGGAATCAAC
Downstream 100 bases:
>100_bases TAATTAAAATTATAAAAAAAGGCCGCCTTCTAAAGTGGCCTTTTTTATTTCCAAATACACAACCTGAATCATAAATTAAC ATTGATATAACTTTTAAGTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 729; Mature: 729
Protein sequence:
>729_residues MRNLVAAALVLSSGVALADEGQWQPYQMPSIADKLKARGIDIPAEQLADLSRYPMNAVVGLGYCTASFVSPQGLAVTNHH CAFRAIQYNSSKEKNYLADGFLATSMDKEPSAGPNERLYVTEAVTDVSAQIRDALPEEPLARVEAIENRQKALIKECESD DNYRCSVRSFHNGLEYYLIKQLMIRDVRLVYAPPESVGGYGGDIDNYEYPRHSGDFTFLRAYVGKDGKPAPYAEDNVPYQ PKSFLKINASGVKAGDGVFAAGYPGSTSRYRLTTELEFASDWLYPTQAKRFQARIDTIEAMGAADTELAIKYAGTVAGMA NRMKKLNGLLDGFKATDIAAIKQQREDAFMTWYASHGDAKQMDELKALIKEGQTQYQTTYYFNNAQSSDLLTAANSLYRL AKEKQKADADRELGYQERDMKMFADRLKRIDSSFDVKVDKVLWQADIEEYLGQNQRVDVLDKMLTVKEGQDLSSMLDGLY AATGLTDQATRLGWMDKTPADFEASDDPFIKLAVALYDTRMAQEKAEKTLDGKLSIARPAMMQAVIAYNKDKGWPVYPDA NGTLRITYGMVDGYQSRDALYKQPFTRLEGIVAKHTGVEPFNAPQKVLDAIKRGDMGKHNVDDLYPDARSFMCKLFSCLD KPEAFNSVPVNFLSSVDTTGGNSGSPVFNGRGELVGLNFDSTYEAITKDWFFNPEITRAVHVDVRYILWMMDKVDNAQNL LQELTLVTN
Sequences:
>Translated_729_residues MRNLVAAALVLSSGVALADEGQWQPYQMPSIADKLKARGIDIPAEQLADLSRYPMNAVVGLGYCTASFVSPQGLAVTNHH CAFRAIQYNSSKEKNYLADGFLATSMDKEPSAGPNERLYVTEAVTDVSAQIRDALPEEPLARVEAIENRQKALIKECESD DNYRCSVRSFHNGLEYYLIKQLMIRDVRLVYAPPESVGGYGGDIDNYEYPRHSGDFTFLRAYVGKDGKPAPYAEDNVPYQ PKSFLKINASGVKAGDGVFAAGYPGSTSRYRLTTELEFASDWLYPTQAKRFQARIDTIEAMGAADTELAIKYAGTVAGMA NRMKKLNGLLDGFKATDIAAIKQQREDAFMTWYASHGDAKQMDELKALIKEGQTQYQTTYYFNNAQSSDLLTAANSLYRL AKEKQKADADRELGYQERDMKMFADRLKRIDSSFDVKVDKVLWQADIEEYLGQNQRVDVLDKMLTVKEGQDLSSMLDGLY AATGLTDQATRLGWMDKTPADFEASDDPFIKLAVALYDTRMAQEKAEKTLDGKLSIARPAMMQAVIAYNKDKGWPVYPDA NGTLRITYGMVDGYQSRDALYKQPFTRLEGIVAKHTGVEPFNAPQKVLDAIKRGDMGKHNVDDLYPDARSFMCKLFSCLD KPEAFNSVPVNFLSSVDTTGGNSGSPVFNGRGELVGLNFDSTYEAITKDWFFNPEITRAVHVDVRYILWMMDKVDNAQNL LQELTLVTN >Mature_729_residues MRNLVAAALVLSSGVALADEGQWQPYQMPSIADKLKARGIDIPAEQLADLSRYPMNAVVGLGYCTASFVSPQGLAVTNHH CAFRAIQYNSSKEKNYLADGFLATSMDKEPSAGPNERLYVTEAVTDVSAQIRDALPEEPLARVEAIENRQKALIKECESD DNYRCSVRSFHNGLEYYLIKQLMIRDVRLVYAPPESVGGYGGDIDNYEYPRHSGDFTFLRAYVGKDGKPAPYAEDNVPYQ PKSFLKINASGVKAGDGVFAAGYPGSTSRYRLTTELEFASDWLYPTQAKRFQARIDTIEAMGAADTELAIKYAGTVAGMA NRMKKLNGLLDGFKATDIAAIKQQREDAFMTWYASHGDAKQMDELKALIKEGQTQYQTTYYFNNAQSSDLLTAANSLYRL AKEKQKADADRELGYQERDMKMFADRLKRIDSSFDVKVDKVLWQADIEEYLGQNQRVDVLDKMLTVKEGQDLSSMLDGLY AATGLTDQATRLGWMDKTPADFEASDDPFIKLAVALYDTRMAQEKAEKTLDGKLSIARPAMMQAVIAYNKDKGWPVYPDA NGTLRITYGMVDGYQSRDALYKQPFTRLEGIVAKHTGVEPFNAPQKVLDAIKRGDMGKHNVDDLYPDARSFMCKLFSCLD KPEAFNSVPVNFLSSVDTTGGNSGSPVFNGRGELVGLNFDSTYEAITKDWFFNPEITRAVHVDVRYILWMMDKVDNAQNL LQELTLVTN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 81296; Mature: 81296
Theoretical pI: Translated: 5.03; Mature: 5.03
Prosite motif: PS00673 V8_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRNLVAAALVLSSGVALADEGQWQPYQMPSIADKLKARGIDIPAEQLADLSRYPMNAVVG CCHHHHHHHHHHCCCEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHH LGYCTASFVSPQGLAVTNHHCAFRAIQYNSSKEKNYLADGFLATSMDKEPSAGPNERLYV HHHHHHHHCCCCCCEEECCCEEEEEEECCCCCCCCHHHCCHHEECCCCCCCCCCCCEEEE TEAVTDVSAQIRDALPEEPLARVEAIENRQKALIKECESDDNYRCSVRSFHNGLEYYLIK EHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHCCHHHHHHH QLMIRDVRLVYAPPESVGGYGGDIDNYEYPRHSGDFTFLRAYVGKDGKPAPYAEDNVPYQ HHHHHCCEEEECCCHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCC PKSFLKINASGVKAGDGVFAAGYPGSTSRYRLTTELEFASDWLYPTQAKRFQARIDTIEA CCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEEEEEHHHCCCCCCHHHHHHHHHHHHHH MGAADTELAIKYAGTVAGMANRMKKLNGLLDGFKATDIAAIKQQREDAFMTWYASHGDAK CCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEEECCCCHH QMDELKALIKEGQTQYQTTYYFNNAQSSDLLTAANSLYRLAKEKQKADADRELGYQERDM HHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHH KMFADRLKRIDSSFDVKVDKVLWQADIEEYLGQNQRVDVLDKMLTVKEGQDLSSMLDGLY HHHHHHHHHCCCCCCEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHH AATGLTDQATRLGWMDKTPADFEASDDPFIKLAVALYDTRMAQEKAEKTLDGKLSIARPA HHCCCCHHHHHCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHH MMQAVIAYNKDKGWPVYPDANGTLRITYGMVDGYQSRDALYKQPFTRLEGIVAKHTGVEP HHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHCHHHHHHHHHHHCCCCCC FNAPQKVLDAIKRGDMGKHNVDDLYPDARSFMCKLFSCLDKPEAFNSVPVNFLSSVDTTG CCCHHHHHHHHHCCCCCCCCCHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCC GNSGSPVFNGRGELVGLNFDSTYEAITKDWFFNPEITRAVHVDVRYILWMMDKVDNAQNL CCCCCCCCCCCCCEEEECCCCHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHCCCHHHH LQELTLVTN HHHHHHHCC >Mature Secondary Structure MRNLVAAALVLSSGVALADEGQWQPYQMPSIADKLKARGIDIPAEQLADLSRYPMNAVVG CCHHHHHHHHHHCCCEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHH LGYCTASFVSPQGLAVTNHHCAFRAIQYNSSKEKNYLADGFLATSMDKEPSAGPNERLYV HHHHHHHHCCCCCCEEECCCEEEEEEECCCCCCCCHHHCCHHEECCCCCCCCCCCCEEEE TEAVTDVSAQIRDALPEEPLARVEAIENRQKALIKECESDDNYRCSVRSFHNGLEYYLIK EHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHCCHHHHHHH QLMIRDVRLVYAPPESVGGYGGDIDNYEYPRHSGDFTFLRAYVGKDGKPAPYAEDNVPYQ HHHHHCCEEEECCCHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCC PKSFLKINASGVKAGDGVFAAGYPGSTSRYRLTTELEFASDWLYPTQAKRFQARIDTIEA CCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEEEEEHHHCCCCCCHHHHHHHHHHHHHH MGAADTELAIKYAGTVAGMANRMKKLNGLLDGFKATDIAAIKQQREDAFMTWYASHGDAK CCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEEECCCCHH QMDELKALIKEGQTQYQTTYYFNNAQSSDLLTAANSLYRLAKEKQKADADRELGYQERDM HHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHH KMFADRLKRIDSSFDVKVDKVLWQADIEEYLGQNQRVDVLDKMLTVKEGQDLSSMLDGLY HHHHHHHHHCCCCCCEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHH AATGLTDQATRLGWMDKTPADFEASDDPFIKLAVALYDTRMAQEKAEKTLDGKLSIARPA HHCCCCHHHHHCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHH MMQAVIAYNKDKGWPVYPDANGTLRITYGMVDGYQSRDALYKQPFTRLEGIVAKHTGVEP HHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHCHHHHHHHHHHHCCCCCC FNAPQKVLDAIKRGDMGKHNVDDLYPDARSFMCKLFSCLDKPEAFNSVPVNFLSSVDTTG CCCHHHHHHHHHCCCCCCCCCHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCC GNSGSPVFNGRGELVGLNFDSTYEAITKDWFFNPEITRAVHVDVRYILWMMDKVDNAQNL CCCCCCCCCCCCCEEEECCCCHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHCCCHHHH LQELTLVTN HHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA