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The map label for this gene is yhdW [H]

Identifier: 119776169

GI number: 119776169

Start: 3614908

End: 3615630

Strand: Direct

Name: yhdW [H]

Synonym: Sama_3037

Alternate gene names: 119776169

Gene position: 3614908-3615630 (Clockwise)

Preceding gene: 119776168

Following gene: 119776171

Centisome position: 83.95

GC content: 54.77

Gene sequence:

>723_bases
ATGTTAATTTTTGCTCATCGGGGTGCCAGCGGTTATGCCCCGGAAAATACCCTCAAAGCCATGGCATTGGCACTTGAGCT
GGAGGCAGAAGCGGTGGAACTTGACGTGCATAACGTCGAAGGTGAATTAGTGGTATTTCACGATCGGCGTTTGGAAGGCA
AAAGCAATGGCAAAGGACTCATCCACCGCCACACGCTGGCCGAACTGGAAAAGCTGTCGGTTCGCGGTGAGCCTATCCCA
ACCTTGTGGCAGGTGCTCGAACTCCTCAATGCCCGATGCATAGTGAATATCGAATTAAAGGGCATTCATACCGGTGAGCC
CATGAAGGCCCTTTACCACAGAGCCGTCGCCGAGCTTGGTTATTCACCCGAGCAGCTGCTGATTTCCTCGTTCAACCATC
CTGAGCTGGCCGATTTCAAGGCAGATGTGCCCGAAGCACGGATTGCACCGCTGCTGGGTTCGCTGCCTTTGGATGGTGCT
GCCATCGCAGGGCAAATGCAGGCCTGGTCATTGCATCTTGATGTCAGTTTTATCAGCCAGACGATAGTGGACCAGGCACA
CGCCATGGGCGTGAAAGTGTACGTTTACACCGTGGATGATGGCGATGATATCCGCGCGCTTGCTGCCATGGGGGTAGACG
GGGTATTTGCCAATTACCCCGACCTGGCACGAAAGGCCCTTGGCGAGCCGTCAAGCTGCGATTATCGGCACTGGTTTGGC
TGA

Upstream 100 bases:

>100_bases
ATCTGGAGCTGGCCTATCCCCAGATGGAAATCACCATCAATCAAGGGGGTGTGCCGAGCCGTGACGCCCAAATCCAACTG
CGCTGAGCCAAGGAGAACCC

Downstream 100 bases:

>100_bases
CAGTACACAACCCCAGTGCACAGCCTGAGTTTACAACTGACGCTGGCGCTGTGCCCAAACCCCGATAAAGATAAAACTTA
ATACCAGCACAGGCACCAAC

Product: glycerophosphoryl diester phosphodiesterase

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MLIFAHRGASGYAPENTLKAMALALELEAEAVELDVHNVEGELVVFHDRRLEGKSNGKGLIHRHTLAELEKLSVRGEPIP
TLWQVLELLNARCIVNIELKGIHTGEPMKALYHRAVAELGYSPEQLLISSFNHPELADFKADVPEARIAPLLGSLPLDGA
AIAGQMQAWSLHLDVSFISQTIVDQAHAMGVKVYVYTVDDGDDIRALAAMGVDGVFANYPDLARKALGEPSSCDYRHWFG

Sequences:

>Translated_240_residues
MLIFAHRGASGYAPENTLKAMALALELEAEAVELDVHNVEGELVVFHDRRLEGKSNGKGLIHRHTLAELEKLSVRGEPIP
TLWQVLELLNARCIVNIELKGIHTGEPMKALYHRAVAELGYSPEQLLISSFNHPELADFKADVPEARIAPLLGSLPLDGA
AIAGQMQAWSLHLDVSFISQTIVDQAHAMGVKVYVYTVDDGDDIRALAAMGVDGVFANYPDLARKALGEPSSCDYRHWFG
>Mature_240_residues
MLIFAHRGASGYAPENTLKAMALALELEAEAVELDVHNVEGELVVFHDRRLEGKSNGKGLIHRHTLAELEKLSVRGEPIP
TLWQVLELLNARCIVNIELKGIHTGEPMKALYHRAVAELGYSPEQLLISSFNHPELADFKADVPEARIAPLLGSLPLDGA
AIAGQMQAWSLHLDVSFISQTIVDQAHAMGVKVYVYTVDDGDDIRALAAMGVDGVFANYPDLARKALGEPSSCDYRHWFG

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

Organism=Escherichia coli, GI1789858, Length=235, Percent_Identity=28.936170212766, Blast_Score=77, Evalue=7e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 26270; Mature: 26270

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIFAHRGASGYAPENTLKAMALALELEAEAVELDVHNVEGELVVFHDRRLEGKSNGKGL
CEEEEECCCCCCCCHHHHHHHHHHEEECCEEEEEEEEECCCCEEEEECCCCCCCCCCCCE
IHRHTLAELEKLSVRGEPIPTLWQVLELLNARCIVNIELKGIHTGEPMKALYHRAVAELG
EEHHHHHHHHHHHCCCCCCHHHHHHHHHHCCEEEEEEEEEEEECCCHHHHHHHHHHHHHC
YSPEQLLISSFNHPELADFKADVPEARIAPLLGSLPLDGAAIAGQMQAWSLHLDVSFISQ
CCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHCCCEEEEEEEEEHHHHHH
TIVDQAHAMGVKVYVYTVDDGDDIRALAAMGVDGVFANYPDLARKALGEPSSCDYRHWFG
HHHHHHHHCEEEEEEEEECCCCCHHHHHHHCCCCHHCCCHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MLIFAHRGASGYAPENTLKAMALALELEAEAVELDVHNVEGELVVFHDRRLEGKSNGKGL
CEEEEECCCCCCCCHHHHHHHHHHEEECCEEEEEEEEECCCCEEEEECCCCCCCCCCCCE
IHRHTLAELEKLSVRGEPIPTLWQVLELLNARCIVNIELKGIHTGEPMKALYHRAVAELG
EEHHHHHHHHHHHCCCCCCHHHHHHHHHHCCEEEEEEEEEEEECCCHHHHHHHHHHHHHC
YSPEQLLISSFNHPELADFKADVPEARIAPLLGSLPLDGAAIAGQMQAWSLHLDVSFISQ
CCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHCCCEEEEEEEEEHHHHHH
TIVDQAHAMGVKVYVYTVDDGDDIRALAAMGVDGVFANYPDLARKALGEPSSCDYRHWFG
HHHHHHHHCEEEEEEEEECCCCCHHHHHHHCCCCHHCCCHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]