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The map label for this gene is psd

Identifier: 119776166

GI number: 119776166

Start: 3609878

End: 3610741

Strand: Direct

Name: psd

Synonym: Sama_3034

Alternate gene names: 119776166

Gene position: 3609878-3610741 (Clockwise)

Preceding gene: 119776165

Following gene: 119776167

Centisome position: 83.83

GC content: 54.4

Gene sequence:

>864_bases
GTGGATAAAGTGAAAATCGCCCTTCAATACCTGATGCCCAAACATTTGGTATCACGCATCGTGGGTAAATTTGCCGCTGC
CGAGGCGGGTTTTGTCACCACCGCCTTTATCAAATGGTTTATCAAGCAGTACGGCATCAACATGAGTGAAGCCCTGCATT
CCAATCCCGAGGCCTACAAAACCTTCAACGACTTCTTTACCCGTGAACTGAAACCCGGTCTGCGCCCTATAGACCAGGCT
GAAGACATCATGGTACATCCCGTTGATGGCGCGGTAAGCCAGCTGGGCCCCATCGAGGATGGCCGCATTTTCCAGGCCAA
GGGGCACCACTACTCGGCGCTGGCGCTTTTAGGTGGTCAGGCCGATGATGCAGCCCGTTTTGAAGAAGGTGATTTTGCCA
CCATTTACCTGGCGCCGAAGGATTACCATCGTATCCACATGCCCATCAAAGGCACACTGTCAAAAATGACCTATGTGCCC
GGAGAGCTCTTTTCGGTTAACCCACTGACAGCCCGCAATGTGCCTGGTCTGTTTGCTCGCAACGAGCGTGTTGTGGCGAT
TTTCGAGACCGACAAAGGCCCGCTGGCCATGGTACTTGTGGGTGCTACCATAGTCGCCAGCATTGAAACCGTCTGGGCAG
GCACTGTCACGCCGCCAACCGGTAAAAAGGTCTTTACCTGGGACTACCCCACCGAAGGCCCAGAAGCCCTTACACTGGAG
AAAGGCGCCGAAATGGGCCGCTTCAAGCTTGGCAGTACAGTGGTGATGCTGTTTGCCAAAGATGCCATCGATGACTTCGC
TGACGGCGTAAAGCCTGAAGCGGTTACCCGCATGGGTCAGCCTTTCGCCAAACTGGAGGACTGA

Upstream 100 bases:

>100_bases
CAGGATCATCGCCAGTCTGGATGAACAGCGTCACGCACGTCATTTCAGACACAACGAAGAATGATCCGGCAACAAATTGA
AAGCAAAAGGACAACGACAA

Downstream 100 bases:

>100_bases
TGTCCAAGGCCTCGTCGGGACTGCTTGAGTTACACTCTGCCGTATTGCTGTTTGGCGGTACCGCGCTTTTCTCCAAGCTT
ATCCCGCTCGGGGCACTCGA

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MDKVKIALQYLMPKHLVSRIVGKFAAAEAGFVTTAFIKWFIKQYGINMSEALHSNPEAYKTFNDFFTRELKPGLRPIDQA
EDIMVHPVDGAVSQLGPIEDGRIFQAKGHHYSALALLGGQADDAARFEEGDFATIYLAPKDYHRIHMPIKGTLSKMTYVP
GELFSVNPLTARNVPGLFARNERVVAIFETDKGPLAMVLVGATIVASIETVWAGTVTPPTGKKVFTWDYPTEGPEALTLE
KGAEMGRFKLGSTVVMLFAKDAIDDFADGVKPEAVTRMGQPFAKLED

Sequences:

>Translated_287_residues
MDKVKIALQYLMPKHLVSRIVGKFAAAEAGFVTTAFIKWFIKQYGINMSEALHSNPEAYKTFNDFFTRELKPGLRPIDQA
EDIMVHPVDGAVSQLGPIEDGRIFQAKGHHYSALALLGGQADDAARFEEGDFATIYLAPKDYHRIHMPIKGTLSKMTYVP
GELFSVNPLTARNVPGLFARNERVVAIFETDKGPLAMVLVGATIVASIETVWAGTVTPPTGKKVFTWDYPTEGPEALTLE
KGAEMGRFKLGSTVVMLFAKDAIDDFADGVKPEAVTRMGQPFAKLED
>Mature_287_residues
MDKVKIALQYLMPKHLVSRIVGKFAAAEAGFVTTAFIKWFIKQYGINMSEALHSNPEAYKTFNDFFTRELKPGLRPIDQA
EDIMVHPVDGAVSQLGPIEDGRIFQAKGHHYSALALLGGQADDAARFEEGDFATIYLAPKDYHRIHMPIKGTLSKMTYVP
GELFSVNPLTARNVPGLFARNERVVAIFETDKGPLAMVLVGATIVASIETVWAGTVTPPTGKKVFTWDYPTEGPEALTLE
KGAEMGRFKLGSTVVMLFAKDAIDDFADGVKPEAVTRMGQPFAKLED

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily

Homologues:

Organism=Homo sapiens, GI13489112, Length=306, Percent_Identity=31.3725490196078, Blast_Score=132, Evalue=3e-31,
Organism=Escherichia coli, GI1790604, Length=284, Percent_Identity=50.7042253521127, Blast_Score=298, Evalue=2e-82,
Organism=Caenorhabditis elegans, GI71980843, Length=283, Percent_Identity=31.8021201413428, Blast_Score=122, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI71980840, Length=283, Percent_Identity=31.8021201413428, Blast_Score=122, Evalue=3e-28,
Organism=Saccharomyces cerevisiae, GI6321609, Length=223, Percent_Identity=29.1479820627803, Blast_Score=103, Evalue=4e-23,
Organism=Saccharomyces cerevisiae, GI6324160, Length=158, Percent_Identity=37.9746835443038, Blast_Score=87, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24649526, Length=284, Percent_Identity=34.1549295774648, Blast_Score=128, Evalue=4e-30,
Organism=Drosophila melanogaster, GI24649528, Length=284, Percent_Identity=34.1549295774648, Blast_Score=128, Evalue=4e-30,
Organism=Drosophila melanogaster, GI24649524, Length=284, Percent_Identity=34.1549295774648, Blast_Score=128, Evalue=4e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_SHEAM (A1SA30)

Other databases:

- EMBL:   CP000507
- RefSeq:   YP_928906.1
- STRING:   A1SA30
- GeneID:   4605281
- GenomeReviews:   CP000507_GR
- KEGG:   saz:Sama_3034
- NMPDR:   fig|326297.7.peg.2851
- eggNOG:   COG0688
- HOGENOM:   HBG302256
- OMA:   YFDQDLH
- PhylomeDB:   A1SA30
- ProtClustDB:   PRK00044
- HAMAP:   MF_00662
- InterPro:   IPR003817
- InterPro:   IPR005221
- PANTHER:   PTHR10067
- TIGRFAMs:   TIGR00163

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 31525; Mature: 31525

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKVKIALQYLMPKHLVSRIVGKFAAAEAGFVTTAFIKWFIKQYGINMSEALHSNPEAYK
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCHHHH
TFNDFFTRELKPGLRPIDQAEDIMVHPVDGAVSQLGPIEDGRIFQAKGHHYSALALLGGQ
HHHHHHHHHHCCCCCCCCCCCCEEEECCCCHHHHCCCCCCCEEEEECCCCEEEEEEECCC
ADDAARFEEGDFATIYLAPKDYHRIHMPIKGTLSKMTYVPGELFSVNPLTARNVPGLFAR
CCCCHHCCCCCEEEEEECCCCCEEEECCHHHHHHHHEECCCCEEECCCCCCCCCCCCEEC
NERVVAIFETDKGPLAMVLVGATIVASIETVWAGTVTPPTGKKVFTWDYPTEGPEALTLE
CCEEEEEEECCCCCEEEEEEHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEC
KGAEMGRFKLGSTVVMLFAKDAIDDFADGVKPEAVTRMGQPFAKLED
CCCCCCCEECCCEEEEEEEHHHHHHHHCCCCCHHHHHCCCCHHHCCC
>Mature Secondary Structure
MDKVKIALQYLMPKHLVSRIVGKFAAAEAGFVTTAFIKWFIKQYGINMSEALHSNPEAYK
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCHHHH
TFNDFFTRELKPGLRPIDQAEDIMVHPVDGAVSQLGPIEDGRIFQAKGHHYSALALLGGQ
HHHHHHHHHHCCCCCCCCCCCCEEEECCCCHHHHCCCCCCCEEEEECCCCEEEEEEECCC
ADDAARFEEGDFATIYLAPKDYHRIHMPIKGTLSKMTYVPGELFSVNPLTARNVPGLFAR
CCCCHHCCCCCEEEEEECCCCCEEEECCHHHHHHHHEECCCCEEECCCCCCCCCCCCEEC
NERVVAIFETDKGPLAMVLVGATIVASIETVWAGTVTPPTGKKVFTWDYPTEGPEALTLE
CCEEEEEEECCCCCEEEEEEHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEC
KGAEMGRFKLGSTVVMLFAKDAIDDFADGVKPEAVTRMGQPFAKLED
CCCCCCCEECCCEEEEEEEHHHHHHHHCCCCCHHHHHCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA