| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is yjeE [H]
Identifier: 119776161
GI number: 119776161
Start: 3604243
End: 3604704
Strand: Reverse
Name: yjeE [H]
Synonym: Sama_3029
Alternate gene names: 119776161
Gene position: 3604704-3604243 (Counterclockwise)
Preceding gene: 119776162
Following gene: 119776160
Centisome position: 83.71
GC content: 49.78
Gene sequence:
>462_bases ATGACAGACGTTAAGATTTTTCTCGAGACCGACGAGCAAACCATTGCCATCGGTCAACAACTCGCAAAACATATCCATCC CCCGCTAACGCTGTACCTCACCGGTGAACTGGGTGCGGGTAAAACGACGCTCAGCCGCGGCATTATTCAGGCACTTGGGC ATCAGGGCGCGGTGAAAAGCCCAACTTATACCCTGGTGGAACCTTACGAGCTTGAGAATGTCGAAATTTACCATTTCGAC CTTTATCGTCTCTCAGACCCCGAAGAGTTGGAGTTTATGGGGATCAGAGATTATTTTTCCGACAAAAGCCTTTGTATAGT AGAGTGGCCTGACAGAGGGTTCGGCTTATTGCCTGAAGCCGATTTACACCTGCATTTGGTATATGCGGGCACTGGACGAG AGCTCAGTATCCAGGCTGGTTCTGCAGCCGGAAGAGCAGTGATAGAAAATCTCAGCGAATGA
Upstream 100 bases:
>100_bases TATTCGCCAATTGGTCAATAGTGATTTAATCTAGGCAACATTGATATAGCCAGTGCCAGCAAAGGGTGTTGGCGCTGTTG CTGACTATTCAAGAGCCGAG
Downstream 100 bases:
>100_bases ATAGAATAATAAGCAGACTTTTTTTCGTTTTAACCCTGCTGTTTTCCGTTGGCGCCTTAGCTGCGAATCAGCTGGATGGT GTCAGGATATGGGCCGCACC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 153; Mature: 152
Protein sequence:
>153_residues MTDVKIFLETDEQTIAIGQQLAKHIHPPLTLYLTGELGAGKTTLSRGIIQALGHQGAVKSPTYTLVEPYELENVEIYHFD LYRLSDPEELEFMGIRDYFSDKSLCIVEWPDRGFGLLPEADLHLHLVYAGTGRELSIQAGSAAGRAVIENLSE
Sequences:
>Translated_153_residues MTDVKIFLETDEQTIAIGQQLAKHIHPPLTLYLTGELGAGKTTLSRGIIQALGHQGAVKSPTYTLVEPYELENVEIYHFD LYRLSDPEELEFMGIRDYFSDKSLCIVEWPDRGFGLLPEADLHLHLVYAGTGRELSIQAGSAAGRAVIENLSE >Mature_152_residues TDVKIFLETDEQTIAIGQQLAKHIHPPLTLYLTGELGAGKTTLSRGIIQALGHQGAVKSPTYTLVEPYELENVEIYHFDL YRLSDPEELEFMGIRDYFSDKSLCIVEWPDRGFGLLPEADLHLHLVYAGTGRELSIQAGSAAGRAVIENLSE
Specific function: Unknown
COG id: COG0802
COG function: function code R; Predicted ATPase or kinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0079 family [H]
Homologues:
Organism=Escherichia coli, GI1790610, Length=152, Percent_Identity=54.6052631578947, Blast_Score=182, Evalue=9e-48,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003442 [H]
Pfam domain/function: PF02367 UPF0079 [H]
EC number: NA
Molecular weight: Translated: 16986; Mature: 16855
Theoretical pI: Translated: 4.49; Mature: 4.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDVKIFLETDEQTIAIGQQLAKHIHPPLTLYLTGELGAGKTTLSRGIIQALGHQGAVKS CCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCC PTYTLVEPYELENVEIYHFDLYRLSDPEELEFMGIRDYFSDKSLCIVEWPDRGFGLLPEA CCEEEECCEECCCEEEEEEEEEECCCCCCEEEEEEHHHCCCCCEEEEECCCCCCCCCCCC DLHLHLVYAGTGRELSIQAGSAAGRAVIENLSE CEEEEEEEECCCCEEEEECCCCCCHHHHHHCCC >Mature Secondary Structure TDVKIFLETDEQTIAIGQQLAKHIHPPLTLYLTGELGAGKTTLSRGIIQALGHQGAVKS CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCC PTYTLVEPYELENVEIYHFDLYRLSDPEELEFMGIRDYFSDKSLCIVEWPDRGFGLLPEA CCEEEECCEECCCEEEEEEEEEECCCCCCEEEEEEHHHCCCCCEEEEECCCCCCCCCCCC DLHLHLVYAGTGRELSIQAGSAAGRAVIENLSE CEEEEEEEECCCCEEEEECCCCCCHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP [C]
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]