| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is mutL
Identifier: 119776159
GI number: 119776159
Start: 3600972
End: 3602924
Strand: Reverse
Name: mutL
Synonym: Sama_3027
Alternate gene names: 119776159
Gene position: 3602924-3600972 (Counterclockwise)
Preceding gene: 119776160
Following gene: 119776158
Centisome position: 83.67
GC content: 55.76
Gene sequence:
>1953_bases ATGGCAATTCAGGTATTGCCACCTCAGTTGGCAAACCAGATTGCGGCTGGTGAGGTGGTAGAGCGCCCAGCCTCGGTGAT AAAAGAGCTGGTGGAAAACAGTTTGGATGCGGGCGCTACCCGGGTCGATATTGATATCGATAAGGGCGGCAGCAAGCTTA TCCGTATTCGCGACAATGGTGGCGGTATTCCGAAAGCGGAATTGGCGCTGGCACTGGCGCGCCATGCGACTTCCAAGGTG CAAACCCTCGAAGATCTTGAAGCGATTCTGAGTTTTGGCTTTCGCGGGGAGGCATTGGCGAGTATCAGTTCTGTGTCACG ACTGACACTGACGTCGCGCACCACAGAGCAAGCAGAAGCCTGGCAGGCCTATGCCGAGGGCTCGGAGGTGGCTATCCGGG TGATGCCTGCGGCGCACCCTGTTGGTACCACCATTGAGGTGGCCGATCTCTTCTTTAATACCCCGGCACGGCGGCGATTT CTCAAGAGTGACAAAACCGAGTTTACCCATATTGATGAATGGCTGAAGCGTATCGCTCTGATACGCTCTGACGTGCATTT TTCCCTGAGCCACAATGGAAAGCCTGTGCGCCAGTATCGTTGCGCTGCGACTGATACTCAGTACTTGCAGAGGCTGGCTC AGGTGGCAGGCAGGGCGTTTGCCGACAGCGCCATCAAGGTCGACTGTCAGCATGATGGCATGGGTTTGAGTGGCTATCTA CAGTCACCAGCGCTCTCTGACATGGTGGATTGCCATTACTTTTATGTTAACGGCCGCCTGATCCGCGACCGATTGGTCAA TCACGCGGTACGTCAGGCCTTCGGTGAGCTCGGGACCTTTGAACAGCCTGCCTTCGTGCTGAGTCTGACACTCGATCCCC ATCAGGTGGATGTCAATGTGCATCCGGCCAAGCACGAGGTGCGTTTTCACCAAGCCCGATATGTGCATGACTTTATTTTG CAGGTGTTGCAATCGGCATTAAGCCAGATGCAGGACTTGCCCTTGGCTGAGGAGCTGCCAAGGGCTCAAGAGTCCCCTGC GTCGGTGAGAGAACATACGGCAGGATACGCGCCCTATACCTTTAACCGTGACGCTGCGACTGAAGCCGCCGGTGTTCTCA GTAGTTTGCCGGACACTCAACGAAGTCAGCGCCAACCCGAGAAGGCTGCATCTGGGCAGCGCAGTAGCGTTGATGCTGGC CTTTCTCAAGGTTCATCGGCCCATCGCGCGTCTCAAACCGGATTGGGGCAGTCGGGAAACGCTGCCACATTTGAAACATC TGAACGCCATGGAAGTGGCTATTCGGGCGCAGGCCAGGGACAGCGTTATGTCCGGGACCAATTGTCCGGGCAACAGCGTC AGGCGGCCCAGTATTATGCCGAGCTGTTGCACACTCCCGAGGTGGTAAGCACCAGCGGCAGTCTTCAGGCAGGTCTGCCC ATGCCGCCCTTGCTGGCGGGCCGCTATTGGGTGTTGGCACAGGATGAGCATCTTCGCCTGTTGTCCATTAGCGATGCCGC TAAAGCGCTTGTCGTACAGGAAATATTATCCAAGCTGCCAACGGGATTGGTGGGGCAGCCTCTGCTGATGCCGGTCGCGG TTGCCGCCGATGCGGATTGGACGATGATATTGGCCGAACGGGAGTCGTTGCTCAGGCGTCTTGGTCTTGAACTGACAATT CGGTATCAGCAGTTGATAATCAAAAAAGTGCCCCCATATCTGAGGGACAGTCAGCTGGCAAAGCTTATCCCTGAGTTTCT GGAATGGATAAAGTTAGAGGTGCCAGCCGACGAAGCCCTGTGTCACTGGCTGGCTCAGTACGTGACAGGTTTTGATGCGG CCCCCAAGGTGTGGCAGCGTATTCAGTCCCTTGAAGCGACTGAGCGGAATAAGATTTTAGAGAGTGCCAGAGATTTGCCC TGGCAGACATGGCTAGATGAATACAAACACTGA
Upstream 100 bases:
>100_bases TTTCTGTCATCAGTCTCAAACAGGCGAATAACCTTAAGTCCGACACCCTGCGTGTGGGCCAAAAGCTGGTGATCCCCAAA GGATAAACAAGGAATACCCC
Downstream 100 bases:
>100_bases CATGACTTCCCTGCCCAAGGTGCTGTTTCTAATGGGGCCAACGGCTTCAGGCAAGACGGCGCTGGCGCTGGACATGGCTG AACATCACAACTGTGAGATT
Product: DNA mismatch repair protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 650; Mature: 649
Protein sequence:
>650_residues MAIQVLPPQLANQIAAGEVVERPASVIKELVENSLDAGATRVDIDIDKGGSKLIRIRDNGGGIPKAELALALARHATSKV QTLEDLEAILSFGFRGEALASISSVSRLTLTSRTTEQAEAWQAYAEGSEVAIRVMPAAHPVGTTIEVADLFFNTPARRRF LKSDKTEFTHIDEWLKRIALIRSDVHFSLSHNGKPVRQYRCAATDTQYLQRLAQVAGRAFADSAIKVDCQHDGMGLSGYL QSPALSDMVDCHYFYVNGRLIRDRLVNHAVRQAFGELGTFEQPAFVLSLTLDPHQVDVNVHPAKHEVRFHQARYVHDFIL QVLQSALSQMQDLPLAEELPRAQESPASVREHTAGYAPYTFNRDAATEAAGVLSSLPDTQRSQRQPEKAASGQRSSVDAG LSQGSSAHRASQTGLGQSGNAATFETSERHGSGYSGAGQGQRYVRDQLSGQQRQAAQYYAELLHTPEVVSTSGSLQAGLP MPPLLAGRYWVLAQDEHLRLLSISDAAKALVVQEILSKLPTGLVGQPLLMPVAVAADADWTMILAERESLLRRLGLELTI RYQQLIIKKVPPYLRDSQLAKLIPEFLEWIKLEVPADEALCHWLAQYVTGFDAAPKVWQRIQSLEATERNKILESARDLP WQTWLDEYKH
Sequences:
>Translated_650_residues MAIQVLPPQLANQIAAGEVVERPASVIKELVENSLDAGATRVDIDIDKGGSKLIRIRDNGGGIPKAELALALARHATSKV QTLEDLEAILSFGFRGEALASISSVSRLTLTSRTTEQAEAWQAYAEGSEVAIRVMPAAHPVGTTIEVADLFFNTPARRRF LKSDKTEFTHIDEWLKRIALIRSDVHFSLSHNGKPVRQYRCAATDTQYLQRLAQVAGRAFADSAIKVDCQHDGMGLSGYL QSPALSDMVDCHYFYVNGRLIRDRLVNHAVRQAFGELGTFEQPAFVLSLTLDPHQVDVNVHPAKHEVRFHQARYVHDFIL QVLQSALSQMQDLPLAEELPRAQESPASVREHTAGYAPYTFNRDAATEAAGVLSSLPDTQRSQRQPEKAASGQRSSVDAG LSQGSSAHRASQTGLGQSGNAATFETSERHGSGYSGAGQGQRYVRDQLSGQQRQAAQYYAELLHTPEVVSTSGSLQAGLP MPPLLAGRYWVLAQDEHLRLLSISDAAKALVVQEILSKLPTGLVGQPLLMPVAVAADADWTMILAERESLLRRLGLELTI RYQQLIIKKVPPYLRDSQLAKLIPEFLEWIKLEVPADEALCHWLAQYVTGFDAAPKVWQRIQSLEATERNKILESARDLP WQTWLDEYKH >Mature_649_residues AIQVLPPQLANQIAAGEVVERPASVIKELVENSLDAGATRVDIDIDKGGSKLIRIRDNGGGIPKAELALALARHATSKVQ TLEDLEAILSFGFRGEALASISSVSRLTLTSRTTEQAEAWQAYAEGSEVAIRVMPAAHPVGTTIEVADLFFNTPARRRFL KSDKTEFTHIDEWLKRIALIRSDVHFSLSHNGKPVRQYRCAATDTQYLQRLAQVAGRAFADSAIKVDCQHDGMGLSGYLQ SPALSDMVDCHYFYVNGRLIRDRLVNHAVRQAFGELGTFEQPAFVLSLTLDPHQVDVNVHPAKHEVRFHQARYVHDFILQ VLQSALSQMQDLPLAEELPRAQESPASVREHTAGYAPYTFNRDAATEAAGVLSSLPDTQRSQRQPEKAASGQRSSVDAGL SQGSSAHRASQTGLGQSGNAATFETSERHGSGYSGAGQGQRYVRDQLSGQQRQAAQYYAELLHTPEVVSTSGSLQAGLPM PPLLAGRYWVLAQDEHLRLLSISDAAKALVVQEILSKLPTGLVGQPLLMPVAVAADADWTMILAERESLLRRLGLELTIR YQQLIIKKVPPYLRDSQLAKLIPEFLEWIKLEVPADEALCHWLAQYVTGFDAAPKVWQRIQSLEATERNKILESARDLPW QTWLDEYKH
Specific function: This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a "molecular matchmaker", a protein that promotes the formation of a stable complex between two or more DNA-bindi
COG id: COG0323
COG function: function code L; DNA mismatch repair enzyme (predicted ATPase)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DNA mismatch repair mutL/hexB family
Homologues:
Organism=Homo sapiens, GI4557757, Length=329, Percent_Identity=34.9544072948328, Blast_Score=205, Evalue=1e-52, Organism=Homo sapiens, GI4505913, Length=355, Percent_Identity=27.3239436619718, Blast_Score=135, Evalue=9e-32, Organism=Homo sapiens, GI310128478, Length=355, Percent_Identity=27.3239436619718, Blast_Score=135, Evalue=1e-31, Organism=Homo sapiens, GI4505911, Length=331, Percent_Identity=28.0966767371601, Blast_Score=134, Evalue=3e-31, Organism=Homo sapiens, GI189458898, Length=331, Percent_Identity=28.0966767371601, Blast_Score=133, Evalue=5e-31, Organism=Homo sapiens, GI189458896, Length=317, Percent_Identity=28.0757097791798, Blast_Score=129, Evalue=1e-29, Organism=Homo sapiens, GI263191589, Length=234, Percent_Identity=29.0598290598291, Blast_Score=107, Evalue=3e-23, Organism=Homo sapiens, GI310128480, Length=307, Percent_Identity=24.7557003257329, Blast_Score=97, Evalue=5e-20, Organism=Homo sapiens, GI91992162, Length=264, Percent_Identity=25, Blast_Score=86, Evalue=1e-16, Organism=Homo sapiens, GI91992160, Length=264, Percent_Identity=25, Blast_Score=86, Evalue=1e-16, Organism=Escherichia coli, GI1790612, Length=649, Percent_Identity=46.9953775038521, Blast_Score=489, Evalue=1e-139, Organism=Caenorhabditis elegans, GI71991825, Length=319, Percent_Identity=35.423197492163, Blast_Score=189, Evalue=4e-48, Organism=Caenorhabditis elegans, GI17562796, Length=350, Percent_Identity=26.2857142857143, Blast_Score=117, Evalue=1e-26, Organism=Saccharomyces cerevisiae, GI6323819, Length=347, Percent_Identity=36.3112391930836, Blast_Score=199, Evalue=2e-51, Organism=Saccharomyces cerevisiae, GI6324247, Length=373, Percent_Identity=24.6648793565684, Blast_Score=112, Evalue=2e-25, Organism=Saccharomyces cerevisiae, GI6325093, Length=350, Percent_Identity=25.4285714285714, Blast_Score=99, Evalue=2e-21, Organism=Saccharomyces cerevisiae, GI6323063, Length=360, Percent_Identity=23.0555555555556, Blast_Score=87, Evalue=1e-17, Organism=Drosophila melanogaster, GI17136968, Length=332, Percent_Identity=34.9397590361446, Blast_Score=183, Evalue=4e-46, Organism=Drosophila melanogaster, GI17136970, Length=194, Percent_Identity=34.5360824742268, Blast_Score=111, Evalue=1e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): MUTL_SHEAM (A1SA23)
Other databases:
- EMBL: CP000507 - RefSeq: YP_928899.1 - ProteinModelPortal: A1SA23 - STRING: A1SA23 - GeneID: 4605274 - GenomeReviews: CP000507_GR - KEGG: saz:Sama_3027 - NMPDR: fig|326297.7.peg.2844 - eggNOG: COG0323 - HOGENOM: HBG520262 - OMA: FTHIDEW - PhylomeDB: A1SA23 - ProtClustDB: PRK00095 - HAMAP: MF_00149 - InterPro: IPR003594 - InterPro: IPR002099 - InterPro: IPR013507 - InterPro: IPR014762 - InterPro: IPR020667 - InterPro: IPR014763 - InterPro: IPR014790 - InterPro: IPR020568 - InterPro: IPR014721 - Gene3D: G3DSA:3.30.565.10 - Gene3D: G3DSA:3.30.230.10 - PANTHER: PTHR10073 - SMART: SM00387 - SMART: SM00853 - TIGRFAMs: TIGR00585
Pfam domain/function: PF01119 DNA_mis_repair; PF02518 HATPase_c; PF08676 MutL_C; SSF55874 ATP_bd_ATPase; SSF54211 Ribosomal_S5_D2-typ_fold
EC number: NA
Molecular weight: Translated: 71718; Mature: 71587
Theoretical pI: Translated: 6.60; Mature: 6.60
Prosite motif: PS00058 DNA_MISMATCH_REPAIR_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIQVLPPQLANQIAAGEVVERPASVIKELVENSLDAGATRVDIDIDKGGSKLIRIRDNG CEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEEECCC GGIPKAELALALARHATSKVQTLEDLEAILSFGFRGEALASISSVSRLTLTSRTTEQAEA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHEEECCCHHHHHH WQAYAEGSEVAIRVMPAAHPVGTTIEVADLFFNTPARRRFLKSDKTEFTHIDEWLKRIAL HHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHH IRSDVHFSLSHNGKPVRQYRCAATDTQYLQRLAQVAGRAFADSAIKVDCQHDGMGLSGYL HHHCCEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC QSPALSDMVDCHYFYVNGRLIRDRLVNHAVRQAFGELGTFEQPAFVLSLTLDPHQVDVNV CCCCHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEEEE HPAKHEVRFHQARYVHDFILQVLQSALSQMQDLPLAEELPRAQESPASVREHTAGYAPYT CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHCCCCCCCC FNRDAATEAAGVLSSLPDTQRSQRQPEKAASGQRSSVDAGLSQGSSAHRASQTGLGQSGN CCCCHHHHHHHHHHHCCCCHHHHCCCHHHHCCCCHHHHHHHHCCCCHHHHHHCCCCCCCC AATFETSERHGSGYSGAGQGQRYVRDQLSGQQRQAAQYYAELLHTPEVVSTSGSLQAGLP CCEEECCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCHHHCCCCCCCCCCC MPPLLAGRYWVLAQDEHLRLLSISDAAKALVVQEILSKLPTGLVGQPLLMPVAVAADADW CCCHHCCCEEEEECCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCC TMILAERESLLRRLGLELTIRYQQLIIKKVPPYLRDSQLAKLIPEFLEWIKLEVPADEAL EEHHHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEECCCCHHHH CHWLAQYVTGFDAAPKVWQRIQSLEATERNKILESARDLPWQTWLDEYKH HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC >Mature Secondary Structure AIQVLPPQLANQIAAGEVVERPASVIKELVENSLDAGATRVDIDIDKGGSKLIRIRDNG EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEEECCC GGIPKAELALALARHATSKVQTLEDLEAILSFGFRGEALASISSVSRLTLTSRTTEQAEA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHEEECCCHHHHHH WQAYAEGSEVAIRVMPAAHPVGTTIEVADLFFNTPARRRFLKSDKTEFTHIDEWLKRIAL HHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHH IRSDVHFSLSHNGKPVRQYRCAATDTQYLQRLAQVAGRAFADSAIKVDCQHDGMGLSGYL HHHCCEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC QSPALSDMVDCHYFYVNGRLIRDRLVNHAVRQAFGELGTFEQPAFVLSLTLDPHQVDVNV CCCCHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEEEE HPAKHEVRFHQARYVHDFILQVLQSALSQMQDLPLAEELPRAQESPASVREHTAGYAPYT CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHCCCCCCCC FNRDAATEAAGVLSSLPDTQRSQRQPEKAASGQRSSVDAGLSQGSSAHRASQTGLGQSGN CCCCHHHHHHHHHHHCCCCHHHHCCCHHHHCCCCHHHHHHHHCCCCHHHHHHCCCCCCCC AATFETSERHGSGYSGAGQGQRYVRDQLSGQQRQAAQYYAELLHTPEVVSTSGSLQAGLP CCEEECCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCHHHCCCCCCCCCCC MPPLLAGRYWVLAQDEHLRLLSISDAAKALVVQEILSKLPTGLVGQPLLMPVAVAADADW CCCHHCCCEEEEECCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCC TMILAERESLLRRLGLELTIRYQQLIIKKVPPYLRDSQLAKLIPEFLEWIKLEVPADEAL EEHHHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEECCCCHHHH CHWLAQYVTGFDAAPKVWQRIQSLEATERNKILESARDLPWQTWLDEYKH HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA