Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is yheT [H]

Identifier: 119776132

GI number: 119776132

Start: 3573552

End: 3574529

Strand: Direct

Name: yheT [H]

Synonym: Sama_3000

Alternate gene names: 119776132

Gene position: 3573552-3574529 (Clockwise)

Preceding gene: 119776129

Following gene: 119776133

Centisome position: 82.99

GC content: 59.92

Gene sequence:

>978_bases
ATGACCTCCCAATTCACGCCTCCCTGGTGGGCCAAGAGTCCCCACATACAAACCATCTTGCCGGTGCTGACCAAGCGCCC
CACACCAGCGCTGCGCCGTGAACGCCTGGAATTGGCAGACGGTGATTTCCTCGATTTGGATTGGCTGGGCCAGCCCGATG
AGGGCAAGCCGATTGTGATGGCCATCCATGGGCTGGAAGGCAGTGCCCGTTCCCACTACGCCAGCAGACTGTTACATGCC
TGTGAGGCCCGGGGACTTGCCGCCGTGGTGCATCACCATCGCAGCTGCTCCGGTGAGTCTAATCGGCTGCCGCGTTCGTA
CCACAGTGGCGATACCCAGGACGTGGCCCACAGCATTAACCACATTCGTGCCCGTTATCCAAACAGCCCCATACTGGCCG
TGGGTTACAGCCTGGGCGGCAATGTCCTCGGCAAGTTTTTGGGTGAGCAACAAAGTGATAGCCCCATCGCCCGCGCCGTG
GTGGTGTCGGCGCCGCTGCGCCTGGCGGCCTGTGCCAAACGCCTGGAAAAAGGCTTCTCCCGGGTGTATCAGTCATATCT
CATTCGTCAGCTTCAGGCCAAGCTTGCCTTTAAAGTCACAGACACTCGCCTGGGGCCCGCGATGCCGGTTCACGCCCATG
AAGTGGCACAACTCTCGACCTTTTATGACTTCGATGACAAGGTCACGGCGCCACTGCACGGTTTCACCGATGTGCACGAC
TACTATGACAGGGCCAGTGGCCTGCCATTTCTGCGACGTATCACCACGCCCACCCTGGTACTCCATGCCGCGGATGACCC
CTTTATGACCGACGCGGTCATCCCCCGCGCCGATGAGCTTTCCAGCGCCGTGGAATATGAGCTTAACCGCTACGGCGGCC
ACGTGGGCTTTATCAATGGTGGCAGCCCGTGGCGGCCACAGTTTTACCTCGAGCGGCGTATCCTGGATTTTTTGCAGGCC
GTGCCTGCTGCAAAATAA

Upstream 100 bases:

>100_bases
AGGAAGAGACAACAGCAAGAGGTTTCTGCCTTGACCTGCTCGTGGTTATAATGGCTCAAATTAAACATACGTTTTATTTC
AGGGCAACCCTTTCCAGCCA

Downstream 100 bases:

>100_bases
GGACCGCAGATGCTCATTCCCTACGACGCCTTAAGCCAATTGCCATCCGATACCCTGAATAACCTTATCCGTGAATACCT
GCTGACTCAGGTGGAAGATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 324

Protein sequence:

>325_residues
MTSQFTPPWWAKSPHIQTILPVLTKRPTPALRRERLELADGDFLDLDWLGQPDEGKPIVMAIHGLEGSARSHYASRLLHA
CEARGLAAVVHHHRSCSGESNRLPRSYHSGDTQDVAHSINHIRARYPNSPILAVGYSLGGNVLGKFLGEQQSDSPIARAV
VVSAPLRLAACAKRLEKGFSRVYQSYLIRQLQAKLAFKVTDTRLGPAMPVHAHEVAQLSTFYDFDDKVTAPLHGFTDVHD
YYDRASGLPFLRRITTPTLVLHAADDPFMTDAVIPRADELSSAVEYELNRYGGHVGFINGGSPWRPQFYLERRILDFLQA
VPAAK

Sequences:

>Translated_325_residues
MTSQFTPPWWAKSPHIQTILPVLTKRPTPALRRERLELADGDFLDLDWLGQPDEGKPIVMAIHGLEGSARSHYASRLLHA
CEARGLAAVVHHHRSCSGESNRLPRSYHSGDTQDVAHSINHIRARYPNSPILAVGYSLGGNVLGKFLGEQQSDSPIARAV
VVSAPLRLAACAKRLEKGFSRVYQSYLIRQLQAKLAFKVTDTRLGPAMPVHAHEVAQLSTFYDFDDKVTAPLHGFTDVHD
YYDRASGLPFLRRITTPTLVLHAADDPFMTDAVIPRADELSSAVEYELNRYGGHVGFINGGSPWRPQFYLERRILDFLQA
VPAAK
>Mature_324_residues
TSQFTPPWWAKSPHIQTILPVLTKRPTPALRRERLELADGDFLDLDWLGQPDEGKPIVMAIHGLEGSARSHYASRLLHAC
EARGLAAVVHHHRSCSGESNRLPRSYHSGDTQDVAHSINHIRARYPNSPILAVGYSLGGNVLGKFLGEQQSDSPIARAVV
VSAPLRLAACAKRLEKGFSRVYQSYLIRQLQAKLAFKVTDTRLGPAMPVHAHEVAQLSTFYDFDDKVTAPLHGFTDVHDY
YDRASGLPFLRRITTPTLVLHAADDPFMTDAVIPRADELSSAVEYELNRYGGHVGFINGGSPWRPQFYLERRILDFLQAV
PAAK

Specific function: Unknown

COG id: COG0429

COG function: function code R; Predicted hydrolase of the alpha/beta-hydrolase fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AB hydrolase superfamily. AB hydrolase 4 family [H]

Homologues:

Organism=Homo sapiens, GI23397663, Length=331, Percent_Identity=30.5135951661631, Blast_Score=165, Evalue=5e-41,
Organism=Homo sapiens, GI194578891, Length=332, Percent_Identity=32.2289156626506, Blast_Score=151, Evalue=9e-37,
Organism=Homo sapiens, GI23397659, Length=346, Percent_Identity=26.3005780346821, Blast_Score=117, Evalue=1e-26,
Organism=Homo sapiens, GI23397661, Length=346, Percent_Identity=26.3005780346821, Blast_Score=117, Evalue=1e-26,
Organism=Homo sapiens, GI269315865, Length=305, Percent_Identity=29.1803278688525, Blast_Score=94, Evalue=1e-19,
Organism=Escherichia coli, GI1789752, Length=329, Percent_Identity=44.6808510638298, Blast_Score=272, Evalue=3e-74,
Organism=Caenorhabditis elegans, GI17566110, Length=311, Percent_Identity=28.2958199356913, Blast_Score=127, Evalue=5e-30,
Organism=Caenorhabditis elegans, GI71985405, Length=311, Percent_Identity=27.6527331189711, Blast_Score=116, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI71985413, Length=198, Percent_Identity=27.7777777777778, Blast_Score=82, Evalue=5e-16,
Organism=Saccharomyces cerevisiae, GI6323866, Length=260, Percent_Identity=29.2307692307692, Blast_Score=112, Evalue=7e-26,
Organism=Saccharomyces cerevisiae, GI6325162, Length=288, Percent_Identity=28.4722222222222, Blast_Score=99, Evalue=8e-22,
Organism=Saccharomyces cerevisiae, GI6319655, Length=266, Percent_Identity=24.812030075188, Blast_Score=85, Evalue=1e-17,
Organism=Drosophila melanogaster, GI281398151, Length=331, Percent_Identity=28.0966767371601, Blast_Score=135, Evalue=6e-32,
Organism=Drosophila melanogaster, GI24652003, Length=331, Percent_Identity=28.0966767371601, Blast_Score=134, Evalue=7e-32,
Organism=Drosophila melanogaster, GI24581365, Length=333, Percent_Identity=26.1261261261261, Blast_Score=105, Evalue=5e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012020
- InterPro:   IPR000073
- InterPro:   IPR000952 [H]

Pfam domain/function: PF00561 Abhydrolase_1 [H]

EC number: NA

Molecular weight: Translated: 36146; Mature: 36015

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: PS01133 UPF0017

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSQFTPPWWAKSPHIQTILPVLTKRPTPALRRERLELADGDFLDLDWLGQPDEGKPIVM
CCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEE
AIHGLEGSARSHYASRLLHACEARGLAAVVHHHRSCSGESNRLPRSYHSGDTQDVAHSIN
EEECCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
HIRARYPNSPILAVGYSLGGNVLGKFLGEQQSDSPIARAVVVSAPLRLAACAKRLEKGFS
HHHHCCCCCCEEEEECHHCHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHH
RVYQSYLIRQLQAKLAFKVTDTRLGPAMPVHAHEVAQLSTFYDFDDKVTAPLHGFTDVHD
HHHHHHHHHHHHHHHHEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
YYDRASGLPFLRRITTPTLVLHAADDPFMTDAVIPRADELSSAVEYELNRYGGHVGFING
HHHHHCCCHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECC
GSPWRPQFYLERRILDFLQAVPAAK
CCCCCHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TSQFTPPWWAKSPHIQTILPVLTKRPTPALRRERLELADGDFLDLDWLGQPDEGKPIVM
CCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEE
AIHGLEGSARSHYASRLLHACEARGLAAVVHHHRSCSGESNRLPRSYHSGDTQDVAHSIN
EEECCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
HIRARYPNSPILAVGYSLGGNVLGKFLGEQQSDSPIARAVVVSAPLRLAACAKRLEKGFS
HHHHCCCCCCEEEEECHHCHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHH
RVYQSYLIRQLQAKLAFKVTDTRLGPAMPVHAHEVAQLSTFYDFDDKVTAPLHGFTDVHD
HHHHHHHHHHHHHHHHEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
YYDRASGLPFLRRITTPTLVLHAADDPFMTDAVIPRADELSSAVEYELNRYGGHVGFING
HHHHHCCCHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECC
GSPWRPQFYLERRILDFLQAVPAAK
CCCCCHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]