| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119776100
Identifier: 119776100
GI number: 119776100
Start: 3533934
End: 3535064
Strand: Direct
Name: 119776100
Synonym: Sama_2968
Alternate gene names: NA
Gene position: 3533934-3535064 (Clockwise)
Preceding gene: 119776099
Following gene: 119776102
Centisome position: 82.07
GC content: 52.87
Gene sequence:
>1131_bases ATGTCCAGACTGCTTTTTTGCCTACTGTTGCCAGTACTCTTGTTGGGCTGCAATGCCACACAAAAATCCACCGACAGCGC ACTTACCAACCACAGTGCTTTACCCGTTAACACCGCCGGAAACGGCCAGCTGGAGCGTCTTTACACCTTTGCAGAGCGAC TTGCACAGAGGCTGAACAATAAGGATATCGACGGCCTATGGCGCCGGGATTTGGTGATTGAGCATATGCGCGCCACGGGT GAAGAACCCATCAATGCCCAGATGTTTGCACAGCTGTTTGAACACCGCTTCAATACCCTCGTCAGCAACAGTTCAGACTG GCGCGTTGATGCGGTGCGGGATGGGCAAATTTTACTGAGTAACAATGTCAGCGGGTTACCCGGCGTTGCTGTGATTTATT TTCGCACCAATCCTCTGACCTCTGAGCCTGAGCTGCTTGACTGGCAACTTCAGGATGCCTTCTCCCGTGGCAGCAATGTT TTCGGGGCTTATATGCAACATGCCCCAAACCTGACAAATTCGGGATTTTTGGCGCTGGCCTCACATGTAAAGCAGGGGCG TGCACTCAGTCTGGACGAGGTGGTCGAGGTGTATCACAGGTTCAGTGATGAAGTGAAACAAGACCCCATCATTATGGGGG ACTTCCTTTCCTTTACCGGCAAACTCGAGATGGACTTACCCCGGGATATTCTGATTGAGATCCACACTAACCGCCCGGCG CTGACCCTGGACAATGGGCAGCCTTTGGCCAACCTGGCTGCCATGGCCGGGGATTTGGACAACAGTCTGCGCGCATTTGA GCTGGGGAAGGCCAATTACGGTGAGACCTCCACCAACCAGCGGCTCATCTATGCCATCAATCTGGCAAGTAGCGGCTTTA TTCCTGAAGCCAATAAAGTTTTTATCGAGTATTGCCGCGCCCATCCCCAGGAGTTTCGGGGGGTATTGATCTACTTTTTA CTGCTGGTGGAACTGGGCGCCTTTGACGATGCAGCCGTTGTCAAACAGGCGATGCGATTGCAGTTTCAGATAGACCCGGA CAAGGAAGTGATCCGCAACAGTGATGACAGCATAGACAACACGAAACTGCGCGCCTTTATGGCCAGTCCCGCCAATCAGG CACTGAACTGA
Upstream 100 bases:
>100_bases CTACACCGGCACCGCTGAGGGAGACTTTACCCAACCCAGCAACCCCGGTATCGACTATCTGGAACAACACCTGAATACAG GTAATCGCTGAGGAATCATG
Downstream 100 bases:
>100_bases CCCGCCCACCTTAACCCATGTCTGCATGGGTTAAGGCCGCCAAAGCCGGCACCAAGAGTACAACAACCGGCTGCACCAAT AGTTATTGAAAAACAGCCAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 376; Mature: 375
Protein sequence:
>376_residues MSRLLFCLLLPVLLLGCNATQKSTDSALTNHSALPVNTAGNGQLERLYTFAERLAQRLNNKDIDGLWRRDLVIEHMRATG EEPINAQMFAQLFEHRFNTLVSNSSDWRVDAVRDGQILLSNNVSGLPGVAVIYFRTNPLTSEPELLDWQLQDAFSRGSNV FGAYMQHAPNLTNSGFLALASHVKQGRALSLDEVVEVYHRFSDEVKQDPIIMGDFLSFTGKLEMDLPRDILIEIHTNRPA LTLDNGQPLANLAAMAGDLDNSLRAFELGKANYGETSTNQRLIYAINLASSGFIPEANKVFIEYCRAHPQEFRGVLIYFL LLVELGAFDDAAVVKQAMRLQFQIDPDKEVIRNSDDSIDNTKLRAFMASPANQALN
Sequences:
>Translated_376_residues MSRLLFCLLLPVLLLGCNATQKSTDSALTNHSALPVNTAGNGQLERLYTFAERLAQRLNNKDIDGLWRRDLVIEHMRATG EEPINAQMFAQLFEHRFNTLVSNSSDWRVDAVRDGQILLSNNVSGLPGVAVIYFRTNPLTSEPELLDWQLQDAFSRGSNV FGAYMQHAPNLTNSGFLALASHVKQGRALSLDEVVEVYHRFSDEVKQDPIIMGDFLSFTGKLEMDLPRDILIEIHTNRPA LTLDNGQPLANLAAMAGDLDNSLRAFELGKANYGETSTNQRLIYAINLASSGFIPEANKVFIEYCRAHPQEFRGVLIYFL LLVELGAFDDAAVVKQAMRLQFQIDPDKEVIRNSDDSIDNTKLRAFMASPANQALN >Mature_375_residues SRLLFCLLLPVLLLGCNATQKSTDSALTNHSALPVNTAGNGQLERLYTFAERLAQRLNNKDIDGLWRRDLVIEHMRATGE EPINAQMFAQLFEHRFNTLVSNSSDWRVDAVRDGQILLSNNVSGLPGVAVIYFRTNPLTSEPELLDWQLQDAFSRGSNVF GAYMQHAPNLTNSGFLALASHVKQGRALSLDEVVEVYHRFSDEVKQDPIIMGDFLSFTGKLEMDLPRDILIEIHTNRPAL TLDNGQPLANLAAMAGDLDNSLRAFELGKANYGETSTNQRLIYAINLASSGFIPEANKVFIEYCRAHPQEFRGVLIYFLL LVELGAFDDAAVVKQAMRLQFQIDPDKEVIRNSDDSIDNTKLRAFMASPANQALN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41945; Mature: 41814
Theoretical pI: Translated: 4.99; Mature: 4.99
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRLLFCLLLPVLLLGCNATQKSTDSALTNHSALPVNTAGNGQLERLYTFAERLAQRLNN CHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCEECCCCCCHHHHHHHHHHHHHHHCCC KDIDGLWRRDLVIEHMRATGEEPINAQMFAQLFEHRFNTLVSNSSDWRVDAVRDGQILLS CCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCEEEEE NNVSGLPGVAVIYFRTNPLTSEPELLDWQLQDAFSRGSNVFGAYMQHAPNLTNSGFLALA CCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHH SHVKQGRALSLDEVVEVYHRFSDEVKQDPIIMGDFLSFTGKLEMDLPRDILIEIHTNRPA HHHHCCCCCCHHHHHHHHHHHHHHHHCCCEEEEHHHHCCCCEECCCCCEEEEEEECCCCE LTLDNGQPLANLAAMAGDLDNSLRAFELGKANYGETSTNQRLIYAINLASSGFIPEANKV EEECCCCCHHHHHHHHCCCCCCHHHEECCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHH FIEYCRAHPQEFRGVLIYFLLLVELGAFDDAAVVKQAMRLQFQIDPDKEVIRNSDDSIDN HHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEEEEECCCHHHHCCCCCCCCC TKLRAFMASPANQALN HHHHHHHCCCHHHCCC >Mature Secondary Structure SRLLFCLLLPVLLLGCNATQKSTDSALTNHSALPVNTAGNGQLERLYTFAERLAQRLNN HHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCEECCCCCCHHHHHHHHHHHHHHHCCC KDIDGLWRRDLVIEHMRATGEEPINAQMFAQLFEHRFNTLVSNSSDWRVDAVRDGQILLS CCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCEEEEE NNVSGLPGVAVIYFRTNPLTSEPELLDWQLQDAFSRGSNVFGAYMQHAPNLTNSGFLALA CCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHH SHVKQGRALSLDEVVEVYHRFSDEVKQDPIIMGDFLSFTGKLEMDLPRDILIEIHTNRPA HHHHCCCCCCHHHHHHHHHHHHHHHHCCCEEEEHHHHCCCCEECCCCCEEEEEEECCCCE LTLDNGQPLANLAAMAGDLDNSLRAFELGKANYGETSTNQRLIYAINLASSGFIPEANKV EEECCCCCHHHHHHHHCCCCCCHHHEECCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHH FIEYCRAHPQEFRGVLIYFLLLVELGAFDDAAVVKQAMRLQFQIDPDKEVIRNSDDSIDN HHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEEEEECCCHHHHCCCCCCCCC TKLRAFMASPANQALN HHHHHHHCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA