| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119776099
Identifier: 119776099
GI number: 119776099
Start: 3531903
End: 3533924
Strand: Direct
Name: 119776099
Synonym: Sama_2967
Alternate gene names: NA
Gene position: 3531903-3533924 (Clockwise)
Preceding gene: 119776092
Following gene: 119776100
Centisome position: 82.02
GC content: 53.41
Gene sequence:
>2022_bases GTGAACCGATGGATCCACTTCCTGCTCGTGACAGGATTGTCTGCATTATTGGCCCTTACGCCAAGCCAAGCCAATACCAT TACCTCAGGTGAATACTCCCTCGAAGTCTCTCCCGCCCCGGATTGGGCCACCCACGAGACGCTTCAACCTCTGCCTGCCC AGCTCAATAATGGCCCCAGCCACTTCCGGTTGGTATCGCGGCAAGTGTTGGTATCGCCGTTAACAGATCACTATTTCCTC GAATTTGCTGCCTTGGCGGCCAATCATCAGGGAGTGAAGGAACTTTCCAAGCTTGAGTTGACCTTCAACCCTGCATTCGA ATCCATGAAGCTGCACAGCCTGCAGGTGGAACGTAACGGCGTTACCAGCGACAGATTGGCGAAGGCGCGCATCAATATTA TCAACCAGGAACCCGAGCTGGTGAATGATTTGTTCCATGGGCTGGCGACTGCCGTGGTGGTGGTTCCCGATCTGCGCGTG GGTGACACGCTGAGATACAGCTACTCGCTCGAGGGCAGAAATCCAGTCTACGGCAAGCAGTTTGGTGGCTACTTTCAGAT GGGCTGGGAAGCAAGCGTCGACCTGGTCAATCTGGGCATCATCAACGCCAGTGGTGTCCCCTTGCAGCTCAAACGCCACG AATTGCCCCCCGCCACCGAATCCACAAGCAAATATGGCATCGAGTATCATTGGCGCCAAACCAGGGTGCCCAGATACAGC TATGAAGAAGGTGCGCCGGCAGATGTCAAATGGTCGCCCTATGTCACCTTCAGCAGCAGCGACAATTGGGCCGCCATAGT CAATTGGGCCAGTGGTCTTTACCGGTTTGACAACAGCCCTTCCCCAGCGCTGACCAAGTATGTAAACAGCGTGAGGGCAA TGGGAAATCAGGCCAAACAGATTGAAGAAATCGTGCGCTTTGTGCAGCAGGAAATCCGCTATTTTGGCATCGAAATGGGG CAAAGCAGCCATGTACCCCATACCCCGAATCAGGTGTTCGAACGTCGGTATGGCGACTGTAAAGACAAGGCCAACCTGAT GAATTTCCTGCTTTCTAACGTCGGCATCGAAAGTTACCCTGCACTGGTTAACACCCGCAGTGGACGCTCATTGCCCGAAC AGCAGCCATCCGGCGTGCTATTTGACCATGTTATTAACCTGGTGGAGTTTAACGGTAAACACTATTGGATTGATGGCACC AATCACGTGCAGGCACAGGGACTGGAACAACTGACACAACCCGATTTCGGCTATGCATTGGTGCTGCGTCAGGGTGAGTC GGCACTGACGGCCATGCCACAAAGTTTGCCCGCGGTAGACAGCATCAATGTTGAACAGTCACTTATCGCGTCTGGATATG ACAGCCCAGTGGACATGTATGTGGTCAGCCGCTACCGCGGGAAAGAGGCCGATCGGATGCGCTATCAACTTCAGGGGGTC TCGACCTATGATGTGGAGCAGCACTACCTCAACTACTATGCCAAGCTCTATCCCGGTATCCGCCTACAAGAGCCTGTGTT GATACACGACAGCAAAGAAGGTCGAAACGAGATTCTACTCCGGGAGCAATATCAAATAGATAACTTCTGGAACGTCGAAG GCAAAAATGCCAATTTCAGTATGCTGGCCTTCAAGCTTACTGATTTCATTCAACTGCCATCCGTGATCCAGCGTACCCAG CCAATGGCCATATCCGGGCCTGTGACTGTTAATCACACCATTCGGGTGAGCTTACCCCAGCCGGTTCAGGTGCACGTCAA CGGGGACGACCTGATAATTGACACCCCCAGTCTCGCCTATCGTTCCAGTGAGCTGGGTCGTCCGGGCACTCTTATCCGTC AACATTCACTGGTCCTGAAGCAGGACAGGATCCCCGCCACCGAGAGCGCCGAGTACTTTGACGCACTGAAAAAAATCGAT CGGGATATCTACTACACCGGCACCGCTGAGGGAGACTTTACCCAACCCAGCAACCCCGGTATCGACTATCTGGAACAACA CCTGAATACAGGTAATCGCTGA
Upstream 100 bases:
>100_bases AAGGAAATTGTGACCCACACTTTGCGACATGTTAGTCAAATGTGATAAATTTTTCGCTCGGTCGGCACATAAGGTGCCAC TTCCACTCAAGGACTGCTCA
Downstream 100 bases:
>100_bases GGAATCATGATGTCCAGACTGCTTTTTTGCCTACTGTTGCCAGTACTCTTGTTGGGCTGCAATGCCACACAAAAATCCAC CGACAGCGCACTTACCAACC
Product: hypothetical protein
Products: NA
Alternate protein names: TPR Repeat-Containing Protein; Transglutaminase-Like; Secreted Protein; Tetratricopeptide Repeat Domain Protein; Tetratricopeptide Protein; Transglutaminase-Like Putative Cysteine Protease; Transmembrane Protein; Transglutaminase-Like Protein; Transglutaminase Domain-Containing Protein
Number of amino acids: Translated: 673; Mature: 673
Protein sequence:
>673_residues MNRWIHFLLVTGLSALLALTPSQANTITSGEYSLEVSPAPDWATHETLQPLPAQLNNGPSHFRLVSRQVLVSPLTDHYFL EFAALAANHQGVKELSKLELTFNPAFESMKLHSLQVERNGVTSDRLAKARINIINQEPELVNDLFHGLATAVVVVPDLRV GDTLRYSYSLEGRNPVYGKQFGGYFQMGWEASVDLVNLGIINASGVPLQLKRHELPPATESTSKYGIEYHWRQTRVPRYS YEEGAPADVKWSPYVTFSSSDNWAAIVNWASGLYRFDNSPSPALTKYVNSVRAMGNQAKQIEEIVRFVQQEIRYFGIEMG QSSHVPHTPNQVFERRYGDCKDKANLMNFLLSNVGIESYPALVNTRSGRSLPEQQPSGVLFDHVINLVEFNGKHYWIDGT NHVQAQGLEQLTQPDFGYALVLRQGESALTAMPQSLPAVDSINVEQSLIASGYDSPVDMYVVSRYRGKEADRMRYQLQGV STYDVEQHYLNYYAKLYPGIRLQEPVLIHDSKEGRNEILLREQYQIDNFWNVEGKNANFSMLAFKLTDFIQLPSVIQRTQ PMAISGPVTVNHTIRVSLPQPVQVHVNGDDLIIDTPSLAYRSSELGRPGTLIRQHSLVLKQDRIPATESAEYFDALKKID RDIYYTGTAEGDFTQPSNPGIDYLEQHLNTGNR
Sequences:
>Translated_673_residues MNRWIHFLLVTGLSALLALTPSQANTITSGEYSLEVSPAPDWATHETLQPLPAQLNNGPSHFRLVSRQVLVSPLTDHYFL EFAALAANHQGVKELSKLELTFNPAFESMKLHSLQVERNGVTSDRLAKARINIINQEPELVNDLFHGLATAVVVVPDLRV GDTLRYSYSLEGRNPVYGKQFGGYFQMGWEASVDLVNLGIINASGVPLQLKRHELPPATESTSKYGIEYHWRQTRVPRYS YEEGAPADVKWSPYVTFSSSDNWAAIVNWASGLYRFDNSPSPALTKYVNSVRAMGNQAKQIEEIVRFVQQEIRYFGIEMG QSSHVPHTPNQVFERRYGDCKDKANLMNFLLSNVGIESYPALVNTRSGRSLPEQQPSGVLFDHVINLVEFNGKHYWIDGT NHVQAQGLEQLTQPDFGYALVLRQGESALTAMPQSLPAVDSINVEQSLIASGYDSPVDMYVVSRYRGKEADRMRYQLQGV STYDVEQHYLNYYAKLYPGIRLQEPVLIHDSKEGRNEILLREQYQIDNFWNVEGKNANFSMLAFKLTDFIQLPSVIQRTQ PMAISGPVTVNHTIRVSLPQPVQVHVNGDDLIIDTPSLAYRSSELGRPGTLIRQHSLVLKQDRIPATESAEYFDALKKID RDIYYTGTAEGDFTQPSNPGIDYLEQHLNTGNR >Mature_673_residues MNRWIHFLLVTGLSALLALTPSQANTITSGEYSLEVSPAPDWATHETLQPLPAQLNNGPSHFRLVSRQVLVSPLTDHYFL EFAALAANHQGVKELSKLELTFNPAFESMKLHSLQVERNGVTSDRLAKARINIINQEPELVNDLFHGLATAVVVVPDLRV GDTLRYSYSLEGRNPVYGKQFGGYFQMGWEASVDLVNLGIINASGVPLQLKRHELPPATESTSKYGIEYHWRQTRVPRYS YEEGAPADVKWSPYVTFSSSDNWAAIVNWASGLYRFDNSPSPALTKYVNSVRAMGNQAKQIEEIVRFVQQEIRYFGIEMG QSSHVPHTPNQVFERRYGDCKDKANLMNFLLSNVGIESYPALVNTRSGRSLPEQQPSGVLFDHVINLVEFNGKHYWIDGT NHVQAQGLEQLTQPDFGYALVLRQGESALTAMPQSLPAVDSINVEQSLIASGYDSPVDMYVVSRYRGKEADRMRYQLQGV STYDVEQHYLNYYAKLYPGIRLQEPVLIHDSKEGRNEILLREQYQIDNFWNVEGKNANFSMLAFKLTDFIQLPSVIQRTQ PMAISGPVTVNHTIRVSLPQPVQVHVNGDDLIIDTPSLAYRSSELGRPGTLIRQHSLVLKQDRIPATESAEYFDALKKID RDIYYTGTAEGDFTQPSNPGIDYLEQHLNTGNR
Specific function: Unknown
COG id: COG1305
COG function: function code E; Transglutaminase-like enzymes, putative cysteine proteases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 75809; Mature: 75809
Theoretical pI: Translated: 6.18; Mature: 6.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNRWIHFLLVTGLSALLALTPSQANTITSGEYSLEVSPAPDWATHETLQPLPAQLNNGPS CCHHHHHHHHHHHHHHHHCCCCCCCCEECCEEEEEECCCCCCCCCHHCCCCHHHHCCCHH HFRLVSRQVLVSPLTDHYFLEFAALAANHQGVKELSKLELTFNPAFESMKLHSLQVERNG HHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHEEEEECCCCCCEEEEEEEEECCC VTSDRLAKARINIINQEPELVNDLFHGLATAVVVVPDLRVGDTLRYSYSLEGRNPVYGKQ CCHHHHHHHHHEEECCCHHHHHHHHHHHHEEEEEECCCCCCCEEEEEEEECCCCCCCCCC FGGYFQMGWEASVDLVNLGIINASGVPLQLKRHELPPATESTSKYGIEYHWRQTRVPRYS CCCEEEECCCCCEEEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCC YEEGAPADVKWSPYVTFSSSDNWAAIVNWASGLYRFDNSPSPALTKYVNSVRAMGNQAKQ CCCCCCCCEECCCEEEECCCCCEEEEEEHHHHHEECCCCCCHHHHHHHHHHHHHCHHHHH IEEIVRFVQQEIRYFGIEMGQSSHVPHTPNQVFERRYGDCKDKANLMNFLLSNVGIESYP HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCC ALVNTRSGRSLPEQQPSGVLFDHVINLVEFNGKHYWIDGTNHVQAQGLEQLTQPDFGYAL HHEECCCCCCCCCCCCCCHHHHHHHHHHEECCCEEEECCCCCHHHHHHHHHCCCCCCEEE VLRQGESALTAMPQSLPAVDSINVEQSLIASGYDSPVDMYVVSRYRGKEADRMRYQLQGV EEECCCHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCHHHEEEHHHCCCCHHHHEEEECCC STYDVEQHYLNYYAKLYPGIRLQEPVLIHDSKEGRNEILLREQYQIDNFWNVEGKNANFS CEEHHHHHHHHHHHHHCCCCEECCCEEEECCCCCCCCEEEEEEECCCCEEECCCCCCCEE MLAFKLTDFIQLPSVIQRTQPMAISGPVTVNHTIRVSLPQPVQVHVNGDDLIIDTPSLAY EEEEHHHHHHHHHHHHHHCCCCEECCCEEEEEEEEEECCCCEEEEECCCEEEEECCCHHH RSSELGRPGTLIRQHSLVLKQDRIPATESAEYFDALKKIDRDIYYTGTAEGDFTQPSNPG CCCCCCCCCHHHHHHHHHEECCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCC IDYLEQHLNTGNR HHHHHHHHCCCCC >Mature Secondary Structure MNRWIHFLLVTGLSALLALTPSQANTITSGEYSLEVSPAPDWATHETLQPLPAQLNNGPS CCHHHHHHHHHHHHHHHHCCCCCCCCEECCEEEEEECCCCCCCCCHHCCCCHHHHCCCHH HFRLVSRQVLVSPLTDHYFLEFAALAANHQGVKELSKLELTFNPAFESMKLHSLQVERNG HHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHEEEEECCCCCCEEEEEEEEECCC VTSDRLAKARINIINQEPELVNDLFHGLATAVVVVPDLRVGDTLRYSYSLEGRNPVYGKQ CCHHHHHHHHHEEECCCHHHHHHHHHHHHEEEEEECCCCCCCEEEEEEEECCCCCCCCCC FGGYFQMGWEASVDLVNLGIINASGVPLQLKRHELPPATESTSKYGIEYHWRQTRVPRYS CCCEEEECCCCCEEEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCC YEEGAPADVKWSPYVTFSSSDNWAAIVNWASGLYRFDNSPSPALTKYVNSVRAMGNQAKQ CCCCCCCCEECCCEEEECCCCCEEEEEEHHHHHEECCCCCCHHHHHHHHHHHHHCHHHHH IEEIVRFVQQEIRYFGIEMGQSSHVPHTPNQVFERRYGDCKDKANLMNFLLSNVGIESYP HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCC ALVNTRSGRSLPEQQPSGVLFDHVINLVEFNGKHYWIDGTNHVQAQGLEQLTQPDFGYAL HHEECCCCCCCCCCCCCCHHHHHHHHHHEECCCEEEECCCCCHHHHHHHHHCCCCCCEEE VLRQGESALTAMPQSLPAVDSINVEQSLIASGYDSPVDMYVVSRYRGKEADRMRYQLQGV EEECCCHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCHHHEEEHHHCCCCHHHHEEEECCC STYDVEQHYLNYYAKLYPGIRLQEPVLIHDSKEGRNEILLREQYQIDNFWNVEGKNANFS CEEHHHHHHHHHHHHHCCCCEECCCEEEECCCCCCCCEEEEEEECCCCEEECCCCCCCEE MLAFKLTDFIQLPSVIQRTQPMAISGPVTVNHTIRVSLPQPVQVHVNGDDLIIDTPSLAY EEEEHHHHHHHHHHHHHHCCCCEECCCEEEEEEEEEECCCCEEEEECCCEEEEECCCHHH RSSELGRPGTLIRQHSLVLKQDRIPATESAEYFDALKKIDRDIYYTGTAEGDFTQPSNPG CCCCCCCCCHHHHHHHHHEECCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCC IDYLEQHLNTGNR HHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA