Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119776099

Identifier: 119776099

GI number: 119776099

Start: 3531903

End: 3533924

Strand: Direct

Name: 119776099

Synonym: Sama_2967

Alternate gene names: NA

Gene position: 3531903-3533924 (Clockwise)

Preceding gene: 119776092

Following gene: 119776100

Centisome position: 82.02

GC content: 53.41

Gene sequence:

>2022_bases
GTGAACCGATGGATCCACTTCCTGCTCGTGACAGGATTGTCTGCATTATTGGCCCTTACGCCAAGCCAAGCCAATACCAT
TACCTCAGGTGAATACTCCCTCGAAGTCTCTCCCGCCCCGGATTGGGCCACCCACGAGACGCTTCAACCTCTGCCTGCCC
AGCTCAATAATGGCCCCAGCCACTTCCGGTTGGTATCGCGGCAAGTGTTGGTATCGCCGTTAACAGATCACTATTTCCTC
GAATTTGCTGCCTTGGCGGCCAATCATCAGGGAGTGAAGGAACTTTCCAAGCTTGAGTTGACCTTCAACCCTGCATTCGA
ATCCATGAAGCTGCACAGCCTGCAGGTGGAACGTAACGGCGTTACCAGCGACAGATTGGCGAAGGCGCGCATCAATATTA
TCAACCAGGAACCCGAGCTGGTGAATGATTTGTTCCATGGGCTGGCGACTGCCGTGGTGGTGGTTCCCGATCTGCGCGTG
GGTGACACGCTGAGATACAGCTACTCGCTCGAGGGCAGAAATCCAGTCTACGGCAAGCAGTTTGGTGGCTACTTTCAGAT
GGGCTGGGAAGCAAGCGTCGACCTGGTCAATCTGGGCATCATCAACGCCAGTGGTGTCCCCTTGCAGCTCAAACGCCACG
AATTGCCCCCCGCCACCGAATCCACAAGCAAATATGGCATCGAGTATCATTGGCGCCAAACCAGGGTGCCCAGATACAGC
TATGAAGAAGGTGCGCCGGCAGATGTCAAATGGTCGCCCTATGTCACCTTCAGCAGCAGCGACAATTGGGCCGCCATAGT
CAATTGGGCCAGTGGTCTTTACCGGTTTGACAACAGCCCTTCCCCAGCGCTGACCAAGTATGTAAACAGCGTGAGGGCAA
TGGGAAATCAGGCCAAACAGATTGAAGAAATCGTGCGCTTTGTGCAGCAGGAAATCCGCTATTTTGGCATCGAAATGGGG
CAAAGCAGCCATGTACCCCATACCCCGAATCAGGTGTTCGAACGTCGGTATGGCGACTGTAAAGACAAGGCCAACCTGAT
GAATTTCCTGCTTTCTAACGTCGGCATCGAAAGTTACCCTGCACTGGTTAACACCCGCAGTGGACGCTCATTGCCCGAAC
AGCAGCCATCCGGCGTGCTATTTGACCATGTTATTAACCTGGTGGAGTTTAACGGTAAACACTATTGGATTGATGGCACC
AATCACGTGCAGGCACAGGGACTGGAACAACTGACACAACCCGATTTCGGCTATGCATTGGTGCTGCGTCAGGGTGAGTC
GGCACTGACGGCCATGCCACAAAGTTTGCCCGCGGTAGACAGCATCAATGTTGAACAGTCACTTATCGCGTCTGGATATG
ACAGCCCAGTGGACATGTATGTGGTCAGCCGCTACCGCGGGAAAGAGGCCGATCGGATGCGCTATCAACTTCAGGGGGTC
TCGACCTATGATGTGGAGCAGCACTACCTCAACTACTATGCCAAGCTCTATCCCGGTATCCGCCTACAAGAGCCTGTGTT
GATACACGACAGCAAAGAAGGTCGAAACGAGATTCTACTCCGGGAGCAATATCAAATAGATAACTTCTGGAACGTCGAAG
GCAAAAATGCCAATTTCAGTATGCTGGCCTTCAAGCTTACTGATTTCATTCAACTGCCATCCGTGATCCAGCGTACCCAG
CCAATGGCCATATCCGGGCCTGTGACTGTTAATCACACCATTCGGGTGAGCTTACCCCAGCCGGTTCAGGTGCACGTCAA
CGGGGACGACCTGATAATTGACACCCCCAGTCTCGCCTATCGTTCCAGTGAGCTGGGTCGTCCGGGCACTCTTATCCGTC
AACATTCACTGGTCCTGAAGCAGGACAGGATCCCCGCCACCGAGAGCGCCGAGTACTTTGACGCACTGAAAAAAATCGAT
CGGGATATCTACTACACCGGCACCGCTGAGGGAGACTTTACCCAACCCAGCAACCCCGGTATCGACTATCTGGAACAACA
CCTGAATACAGGTAATCGCTGA

Upstream 100 bases:

>100_bases
AAGGAAATTGTGACCCACACTTTGCGACATGTTAGTCAAATGTGATAAATTTTTCGCTCGGTCGGCACATAAGGTGCCAC
TTCCACTCAAGGACTGCTCA

Downstream 100 bases:

>100_bases
GGAATCATGATGTCCAGACTGCTTTTTTGCCTACTGTTGCCAGTACTCTTGTTGGGCTGCAATGCCACACAAAAATCCAC
CGACAGCGCACTTACCAACC

Product: hypothetical protein

Products: NA

Alternate protein names: TPR Repeat-Containing Protein; Transglutaminase-Like; Secreted Protein; Tetratricopeptide Repeat Domain Protein; Tetratricopeptide Protein; Transglutaminase-Like Putative Cysteine Protease; Transmembrane Protein; Transglutaminase-Like Protein; Transglutaminase Domain-Containing Protein

Number of amino acids: Translated: 673; Mature: 673

Protein sequence:

>673_residues
MNRWIHFLLVTGLSALLALTPSQANTITSGEYSLEVSPAPDWATHETLQPLPAQLNNGPSHFRLVSRQVLVSPLTDHYFL
EFAALAANHQGVKELSKLELTFNPAFESMKLHSLQVERNGVTSDRLAKARINIINQEPELVNDLFHGLATAVVVVPDLRV
GDTLRYSYSLEGRNPVYGKQFGGYFQMGWEASVDLVNLGIINASGVPLQLKRHELPPATESTSKYGIEYHWRQTRVPRYS
YEEGAPADVKWSPYVTFSSSDNWAAIVNWASGLYRFDNSPSPALTKYVNSVRAMGNQAKQIEEIVRFVQQEIRYFGIEMG
QSSHVPHTPNQVFERRYGDCKDKANLMNFLLSNVGIESYPALVNTRSGRSLPEQQPSGVLFDHVINLVEFNGKHYWIDGT
NHVQAQGLEQLTQPDFGYALVLRQGESALTAMPQSLPAVDSINVEQSLIASGYDSPVDMYVVSRYRGKEADRMRYQLQGV
STYDVEQHYLNYYAKLYPGIRLQEPVLIHDSKEGRNEILLREQYQIDNFWNVEGKNANFSMLAFKLTDFIQLPSVIQRTQ
PMAISGPVTVNHTIRVSLPQPVQVHVNGDDLIIDTPSLAYRSSELGRPGTLIRQHSLVLKQDRIPATESAEYFDALKKID
RDIYYTGTAEGDFTQPSNPGIDYLEQHLNTGNR

Sequences:

>Translated_673_residues
MNRWIHFLLVTGLSALLALTPSQANTITSGEYSLEVSPAPDWATHETLQPLPAQLNNGPSHFRLVSRQVLVSPLTDHYFL
EFAALAANHQGVKELSKLELTFNPAFESMKLHSLQVERNGVTSDRLAKARINIINQEPELVNDLFHGLATAVVVVPDLRV
GDTLRYSYSLEGRNPVYGKQFGGYFQMGWEASVDLVNLGIINASGVPLQLKRHELPPATESTSKYGIEYHWRQTRVPRYS
YEEGAPADVKWSPYVTFSSSDNWAAIVNWASGLYRFDNSPSPALTKYVNSVRAMGNQAKQIEEIVRFVQQEIRYFGIEMG
QSSHVPHTPNQVFERRYGDCKDKANLMNFLLSNVGIESYPALVNTRSGRSLPEQQPSGVLFDHVINLVEFNGKHYWIDGT
NHVQAQGLEQLTQPDFGYALVLRQGESALTAMPQSLPAVDSINVEQSLIASGYDSPVDMYVVSRYRGKEADRMRYQLQGV
STYDVEQHYLNYYAKLYPGIRLQEPVLIHDSKEGRNEILLREQYQIDNFWNVEGKNANFSMLAFKLTDFIQLPSVIQRTQ
PMAISGPVTVNHTIRVSLPQPVQVHVNGDDLIIDTPSLAYRSSELGRPGTLIRQHSLVLKQDRIPATESAEYFDALKKID
RDIYYTGTAEGDFTQPSNPGIDYLEQHLNTGNR
>Mature_673_residues
MNRWIHFLLVTGLSALLALTPSQANTITSGEYSLEVSPAPDWATHETLQPLPAQLNNGPSHFRLVSRQVLVSPLTDHYFL
EFAALAANHQGVKELSKLELTFNPAFESMKLHSLQVERNGVTSDRLAKARINIINQEPELVNDLFHGLATAVVVVPDLRV
GDTLRYSYSLEGRNPVYGKQFGGYFQMGWEASVDLVNLGIINASGVPLQLKRHELPPATESTSKYGIEYHWRQTRVPRYS
YEEGAPADVKWSPYVTFSSSDNWAAIVNWASGLYRFDNSPSPALTKYVNSVRAMGNQAKQIEEIVRFVQQEIRYFGIEMG
QSSHVPHTPNQVFERRYGDCKDKANLMNFLLSNVGIESYPALVNTRSGRSLPEQQPSGVLFDHVINLVEFNGKHYWIDGT
NHVQAQGLEQLTQPDFGYALVLRQGESALTAMPQSLPAVDSINVEQSLIASGYDSPVDMYVVSRYRGKEADRMRYQLQGV
STYDVEQHYLNYYAKLYPGIRLQEPVLIHDSKEGRNEILLREQYQIDNFWNVEGKNANFSMLAFKLTDFIQLPSVIQRTQ
PMAISGPVTVNHTIRVSLPQPVQVHVNGDDLIIDTPSLAYRSSELGRPGTLIRQHSLVLKQDRIPATESAEYFDALKKID
RDIYYTGTAEGDFTQPSNPGIDYLEQHLNTGNR

Specific function: Unknown

COG id: COG1305

COG function: function code E; Transglutaminase-like enzymes, putative cysteine proteases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 75809; Mature: 75809

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRWIHFLLVTGLSALLALTPSQANTITSGEYSLEVSPAPDWATHETLQPLPAQLNNGPS
CCHHHHHHHHHHHHHHHHCCCCCCCCEECCEEEEEECCCCCCCCCHHCCCCHHHHCCCHH
HFRLVSRQVLVSPLTDHYFLEFAALAANHQGVKELSKLELTFNPAFESMKLHSLQVERNG
HHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHEEEEECCCCCCEEEEEEEEECCC
VTSDRLAKARINIINQEPELVNDLFHGLATAVVVVPDLRVGDTLRYSYSLEGRNPVYGKQ
CCHHHHHHHHHEEECCCHHHHHHHHHHHHEEEEEECCCCCCCEEEEEEEECCCCCCCCCC
FGGYFQMGWEASVDLVNLGIINASGVPLQLKRHELPPATESTSKYGIEYHWRQTRVPRYS
CCCEEEECCCCCEEEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCC
YEEGAPADVKWSPYVTFSSSDNWAAIVNWASGLYRFDNSPSPALTKYVNSVRAMGNQAKQ
CCCCCCCCEECCCEEEECCCCCEEEEEEHHHHHEECCCCCCHHHHHHHHHHHHHCHHHHH
IEEIVRFVQQEIRYFGIEMGQSSHVPHTPNQVFERRYGDCKDKANLMNFLLSNVGIESYP
HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCC
ALVNTRSGRSLPEQQPSGVLFDHVINLVEFNGKHYWIDGTNHVQAQGLEQLTQPDFGYAL
HHEECCCCCCCCCCCCCCHHHHHHHHHHEECCCEEEECCCCCHHHHHHHHHCCCCCCEEE
VLRQGESALTAMPQSLPAVDSINVEQSLIASGYDSPVDMYVVSRYRGKEADRMRYQLQGV
EEECCCHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCHHHEEEHHHCCCCHHHHEEEECCC
STYDVEQHYLNYYAKLYPGIRLQEPVLIHDSKEGRNEILLREQYQIDNFWNVEGKNANFS
CEEHHHHHHHHHHHHHCCCCEECCCEEEECCCCCCCCEEEEEEECCCCEEECCCCCCCEE
MLAFKLTDFIQLPSVIQRTQPMAISGPVTVNHTIRVSLPQPVQVHVNGDDLIIDTPSLAY
EEEEHHHHHHHHHHHHHHCCCCEECCCEEEEEEEEEECCCCEEEEECCCEEEEECCCHHH
RSSELGRPGTLIRQHSLVLKQDRIPATESAEYFDALKKIDRDIYYTGTAEGDFTQPSNPG
CCCCCCCCCHHHHHHHHHEECCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCC
IDYLEQHLNTGNR
HHHHHHHHCCCCC
>Mature Secondary Structure
MNRWIHFLLVTGLSALLALTPSQANTITSGEYSLEVSPAPDWATHETLQPLPAQLNNGPS
CCHHHHHHHHHHHHHHHHCCCCCCCCEECCEEEEEECCCCCCCCCHHCCCCHHHHCCCHH
HFRLVSRQVLVSPLTDHYFLEFAALAANHQGVKELSKLELTFNPAFESMKLHSLQVERNG
HHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHEEEEECCCCCCEEEEEEEEECCC
VTSDRLAKARINIINQEPELVNDLFHGLATAVVVVPDLRVGDTLRYSYSLEGRNPVYGKQ
CCHHHHHHHHHEEECCCHHHHHHHHHHHHEEEEEECCCCCCCEEEEEEEECCCCCCCCCC
FGGYFQMGWEASVDLVNLGIINASGVPLQLKRHELPPATESTSKYGIEYHWRQTRVPRYS
CCCEEEECCCCCEEEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCC
YEEGAPADVKWSPYVTFSSSDNWAAIVNWASGLYRFDNSPSPALTKYVNSVRAMGNQAKQ
CCCCCCCCEECCCEEEECCCCCEEEEEEHHHHHEECCCCCCHHHHHHHHHHHHHCHHHHH
IEEIVRFVQQEIRYFGIEMGQSSHVPHTPNQVFERRYGDCKDKANLMNFLLSNVGIESYP
HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCC
ALVNTRSGRSLPEQQPSGVLFDHVINLVEFNGKHYWIDGTNHVQAQGLEQLTQPDFGYAL
HHEECCCCCCCCCCCCCCHHHHHHHHHHEECCCEEEECCCCCHHHHHHHHHCCCCCCEEE
VLRQGESALTAMPQSLPAVDSINVEQSLIASGYDSPVDMYVVSRYRGKEADRMRYQLQGV
EEECCCHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCHHHEEEHHHCCCCHHHHEEEECCC
STYDVEQHYLNYYAKLYPGIRLQEPVLIHDSKEGRNEILLREQYQIDNFWNVEGKNANFS
CEEHHHHHHHHHHHHHCCCCEECCCEEEECCCCCCCCEEEEEEECCCCEEECCCCCCCEE
MLAFKLTDFIQLPSVIQRTQPMAISGPVTVNHTIRVSLPQPVQVHVNGDDLIIDTPSLAY
EEEEHHHHHHHHHHHHHHCCCCEECCCEEEEEEEEEECCCCEEEEECCCEEEEECCCHHH
RSSELGRPGTLIRQHSLVLKQDRIPATESAEYFDALKKIDRDIYYTGTAEGDFTQPSNPG
CCCCCCCCCHHHHHHHHHEECCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCC
IDYLEQHLNTGNR
HHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA