| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775976
Identifier: 119775976
GI number: 119775976
Start: 3384008
End: 3384415
Strand: Direct
Name: 119775976
Synonym: Sama_2844
Alternate gene names: NA
Gene position: 3384008-3384415 (Clockwise)
Preceding gene: 119775975
Following gene: 119775977
Centisome position: 78.59
GC content: 33.33
Gene sequence:
>408_bases ATGAGATTACATGGAACATCAAAAACTAAAGAATCGAAATACAATGCAACAGTAGGCTTATTTATAAGCATTGGGATGCT GTTGGTTGCATTAATGGTTTTTGATTTCTCGGAAATGCCAGAATTTGGCAAAATTTTCATGATATTTTGGATTGGTGCCG TTTGCGCACAAATTTACCAATCTTATAGAAATTCAGTATTTTCTCGTAAAAGCTTACATCATGAAGTTACCGATCATGAA TTAAAGGTAGATGGATATAAATCACCTTCAAATCACAAAGCTGAACTTGAAAAGGATTATGCTTTAAGGTTAAGAAAACT AGAAAACTTATATAGAGACGGATTGATAACGACGACAGAATACGAAGCAAAAAGACAAGATATTCTGGATGAAGATTGGG GTAGCTAA
Upstream 100 bases:
>100_bases CTTAACAAGGCCAGCCAGCATCGCTCCCTGCGGTCGCTGGACCTCGTTTCACTCGGCCGCTGCTGGCGGCGTTAGCTACC CATGGAGAATGGAGTTCTAA
Downstream 100 bases:
>100_bases CAAGCCATTACAATAACGGGACTGCTAACAGCTTGCTCGGTTCCGCTTCGCTTCACATTTTAGCAAGCTATTATCAGCCC CTGAATGGGGCGTTATATTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 135; Mature: 135
Protein sequence:
>135_residues MRLHGTSKTKESKYNATVGLFISIGMLLVALMVFDFSEMPEFGKIFMIFWIGAVCAQIYQSYRNSVFSRKSLHHEVTDHE LKVDGYKSPSNHKAELEKDYALRLRKLENLYRDGLITTTEYEAKRQDILDEDWGS
Sequences:
>Translated_135_residues MRLHGTSKTKESKYNATVGLFISIGMLLVALMVFDFSEMPEFGKIFMIFWIGAVCAQIYQSYRNSVFSRKSLHHEVTDHE LKVDGYKSPSNHKAELEKDYALRLRKLENLYRDGLITTTEYEAKRQDILDEDWGS >Mature_135_residues MRLHGTSKTKESKYNATVGLFISIGMLLVALMVFDFSEMPEFGKIFMIFWIGAVCAQIYQSYRNSVFSRKSLHHEVTDHE LKVDGYKSPSNHKAELEKDYALRLRKLENLYRDGLITTTEYEAKRQDILDEDWGS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15690; Mature: 15690
Theoretical pI: Translated: 7.07; Mature: 7.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLHGTSKTKESKYNATVGLFISIGMLLVALMVFDFSEMPEFGKIFMIFWIGAVCAQIYQ CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH SYRNSVFSRKSLHHEVTDHELKVDGYKSPSNHKAELEKDYALRLRKLENLYRDGLITTTE HHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCH YEAKRQDILDEDWGS HHHHHHHHCCCCCCC >Mature Secondary Structure MRLHGTSKTKESKYNATVGLFISIGMLLVALMVFDFSEMPEFGKIFMIFWIGAVCAQIYQ CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH SYRNSVFSRKSLHHEVTDHELKVDGYKSPSNHKAELEKDYALRLRKLENLYRDGLITTTE HHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCH YEAKRQDILDEDWGS HHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA