Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119775975

Identifier: 119775975

GI number: 119775975

Start: 3383604

End: 3383912

Strand: Direct

Name: 119775975

Synonym: Sama_2843

Alternate gene names: NA

Gene position: 3383604-3383912 (Clockwise)

Preceding gene: 119775974

Following gene: 119775976

Centisome position: 78.58

GC content: 45.31

Gene sequence:

>309_bases
ATGAACAAGCATTGCTGCAGAGACATGGAAGACGCAATCACATTAGATTGTGATCAACATATAGATGTACTCGAATGTCC
TGATGTATTGGTAAGCTACATTCCAAAGTTCGATGAGTATGGGTTAATTATCCACGATGGTGGCAGTTCGTCGTTAGAGA
TACGGTTTTGCCCATGGTGTGGTTCGAAGCTGCCGGAGTCGAAAAGAGAGGCGTGGTTCGGCAGGTTGGAAGAGCTAGGG
TTCGATGATCCTAGTGAACAAAACATACCAGAGGAGTTCGAAAGTGATGCGTGGTATCGCAACACTTAA

Upstream 100 bases:

>100_bases
CAGGTATTGGTAAATATGAGTTCGTGCAAACTGCCTTGTAACAAGTCAAGGTTTGGGACGCGCTAACGCGCGCCCCAACT
TGAAGCGTTAAGTGACGTTT

Downstream 100 bases:

>100_bases
CAAGGCCAGCCAGCATCGCTCCCTGCGGTCGCTGGACCTCGTTTCACTCGGCCGCTGCTGGCGGCGTTAGCTACCCATGG
AGAATGGAGTTCTAAATGAG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 102; Mature: 102

Protein sequence:

>102_residues
MNKHCCRDMEDAITLDCDQHIDVLECPDVLVSYIPKFDEYGLIIHDGGSSSLEIRFCPWCGSKLPESKREAWFGRLEELG
FDDPSEQNIPEEFESDAWYRNT

Sequences:

>Translated_102_residues
MNKHCCRDMEDAITLDCDQHIDVLECPDVLVSYIPKFDEYGLIIHDGGSSSLEIRFCPWCGSKLPESKREAWFGRLEELG
FDDPSEQNIPEEFESDAWYRNT
>Mature_102_residues
MNKHCCRDMEDAITLDCDQHIDVLECPDVLVSYIPKFDEYGLIIHDGGSSSLEIRFCPWCGSKLPESKREAWFGRLEELG
FDDPSEQNIPEEFESDAWYRNT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11834; Mature: 11834

Theoretical pI: Translated: 4.06; Mature: 4.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.9 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
7.8 %Cys+Met (Translated Protein)
5.9 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
7.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKHCCRDMEDAITLDCDQHIDVLECPDVLVSYIPKFDEYGLIIHDGGSSSLEIRFCPWC
CCCCCCCCCCHHEEECCCCCCCCCCCHHHHHHHCCCCCCCCEEEECCCCCEEEEEECCCC
GSKLPESKREAWFGRLEELGFDDPSEQNIPEEFESDAWYRNT
CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCC
>Mature Secondary Structure
MNKHCCRDMEDAITLDCDQHIDVLECPDVLVSYIPKFDEYGLIIHDGGSSSLEIRFCPWC
CCCCCCCCCCHHEEECCCCCCCCCCCHHHHHHHCCCCCCCCEEEECCCCCEEEEEECCCC
GSKLPESKREAWFGRLEELGFDDPSEQNIPEEFESDAWYRNT
CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA