Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

Click here to switch to the map view.

The map label for this gene is 119775925

Identifier: 119775925

GI number: 119775925

Start: 3332367

End: 3332633

Strand: Direct

Name: 119775925

Synonym: Sama_2793

Alternate gene names: NA

Gene position: 3332367-3332633 (Clockwise)

Preceding gene: 119775923

Following gene: 119775929

Centisome position: 77.39

GC content: 53.18

Gene sequence:

>267_bases
ATGCGCACCCCCTCAGCTATCCTCACCAAAGTCGCCCTGGCAATGGCGCTTGTGGTTAGCTTTGCCGTACCCGCCGAAGA
AGAACCTACTCTCGACCTTCCTCCGGCCCCCAGTGAAGATGTCAAACAAATCAAAGAAGTCTGTCTGGAGCTCATCACAG
AGCAGGAAATCCCACTCGAAGAGCAGGAAGGCTATTTGCTGACTTGCGTAAACGACCAGTTGTTCGAGATGGGCTATTTG
GCGGTGGTGCAACAAGATCTCGACTGA

Upstream 100 bases:

>100_bases
GGCTAAACTTACTGTCACAATAGCGCCGCCTCCGGGGCATTGTAAGGATGCCGAGCGGCACCTTGGTCCCGGTTGTTCTA
ACCCCTTGAAGGAACCCAAA

Downstream 100 bases:

>100_bases
ACCAGTCTGAAGTCGAAAATACAAAACGGCCCTTGGGCCGTTTTGTGTTTCTCAAGGTCGTGATTATTGACTGCCGGGCT
TCAGTGCCAATGGCCGCTGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 88; Mature: 88

Protein sequence:

>88_residues
MRTPSAILTKVALAMALVVSFAVPAEEEPTLDLPPAPSEDVKQIKEVCLELITEQEIPLEEQEGYLLTCVNDQLFEMGYL
AVVQQDLD

Sequences:

>Translated_88_residues
MRTPSAILTKVALAMALVVSFAVPAEEEPTLDLPPAPSEDVKQIKEVCLELITEQEIPLEEQEGYLLTCVNDQLFEMGYL
AVVQQDLD
>Mature_88_residues
MRTPSAILTKVALAMALVVSFAVPAEEEPTLDLPPAPSEDVKQIKEVCLELITEQEIPLEEQEGYLLTCVNDQLFEMGYL
AVVQQDLD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 9732; Mature: 9732

Theoretical pI: Translated: 3.59; Mature: 3.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTPSAILTKVALAMALVVSFAVPAEEEPTLDLPPAPSEDVKQIKEVCLELITEQEIPLE
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
EQEGYLLTCVNDQLFEMGYLAVVQQDLD
CCCCEEEEECCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRTPSAILTKVALAMALVVSFAVPAEEEPTLDLPPAPSEDVKQIKEVCLELITEQEIPLE
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
EQEGYLLTCVNDQLFEMGYLAVVQQDLD
CCCCEEEEECCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA