Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119775920

Identifier: 119775920

GI number: 119775920

Start: 3329749

End: 3330132

Strand: Direct

Name: 119775920

Synonym: Sama_2788

Alternate gene names: NA

Gene position: 3329749-3330132 (Clockwise)

Preceding gene: 119775919

Following gene: 119775921

Centisome position: 77.33

GC content: 55.99

Gene sequence:

>384_bases
ATGAGACTGAATCAAATCACCCTGAGCGTGACCGATATGGCGGCCGCCGTGGAATTTTATCTGACACTGGGCGCGATACA
GATAGTGGATACGCCGCACTATGCCCGCTTCGCCCTGCCTGAGGGTGACGAGAGTTTTTCCCTGCACCTGCGCAAGGAGC
CGCCCTCACCGGGCCACTGTCTCTACTTTGAGAGTGAGCGACTGGACGAGTGGGTGGCAGAACTGAAATCCCGAGGCCTC
TCTTTTAAAGGAGAGCCGGAAGATAAACCCTGGCTGTGGCGTGAGGCTGAACTGACCGACCCCAGCGGCAATACCATCAA
GTTGTTTTATGCCGCCGAAAATCGCCTGAATCCCCCCTGGCGGGTGGAAAAACGTAAATACTGA

Upstream 100 bases:

>100_bases
CCTGCTTGGCCACTACACTGAGCTGCTGTTGCCAATGCGTCAGTACCGGGATCCGTTTCGATACGGCATGTAACCACACC
GCACTGACACAGGAGGCAAG

Downstream 100 bases:

>100_bases
AATCAAATATTCGCACGCAATAACGACAAGGAACGCAATCATGGTACATCTGGAACACATTAATCTGGTCGTGCATGACC
TGGAAAAGAGCCTGAACTTT

Product: glyoxalase/dioxygenase superfamily protein

Products: NA

Alternate protein names: Glyoxalase/Dioxygenase Superfamily Protein; Glyoxalase Family Protein; Glyoxylase; Phosphomethylpyrimidine Kinase

Number of amino acids: Translated: 127; Mature: 127

Protein sequence:

>127_residues
MRLNQITLSVTDMAAAVEFYLTLGAIQIVDTPHYARFALPEGDESFSLHLRKEPPSPGHCLYFESERLDEWVAELKSRGL
SFKGEPEDKPWLWREAELTDPSGNTIKLFYAAENRLNPPWRVEKRKY

Sequences:

>Translated_127_residues
MRLNQITLSVTDMAAAVEFYLTLGAIQIVDTPHYARFALPEGDESFSLHLRKEPPSPGHCLYFESERLDEWVAELKSRGL
SFKGEPEDKPWLWREAELTDPSGNTIKLFYAAENRLNPPWRVEKRKY
>Mature_127_residues
MRLNQITLSVTDMAAAVEFYLTLGAIQIVDTPHYARFALPEGDESFSLHLRKEPPSPGHCLYFESERLDEWVAELKSRGL
SFKGEPEDKPWLWREAELTDPSGNTIKLFYAAENRLNPPWRVEKRKY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14726; Mature: 14726

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLNQITLSVTDMAAAVEFYLTLGAIQIVDTPHYARFALPEGDESFSLHLRKEPPSPGHC
CCCCEEEEEHHHHHHHHHHHHHHCEEEEEECCCCEEEECCCCCCCEEEEEEECCCCCCEE
LYFESERLDEWVAELKSRGLSFKGEPEDKPWLWREAELTDPSGNTIKLFYAAENRLNPPW
EEECHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCCC
RVEKRKY
CCCCCCC
>Mature Secondary Structure
MRLNQITLSVTDMAAAVEFYLTLGAIQIVDTPHYARFALPEGDESFSLHLRKEPPSPGHC
CCCCEEEEEHHHHHHHHHHHHHHCEEEEEECCCCEEEECCCCCCCEEEEEEECCCCCCEE
LYFESERLDEWVAELKSRGLSFKGEPEDKPWLWREAELTDPSGNTIKLFYAAENRLNPPW
EEECHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCCC
RVEKRKY
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA