| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is 119775920
Identifier: 119775920
GI number: 119775920
Start: 3329749
End: 3330132
Strand: Direct
Name: 119775920
Synonym: Sama_2788
Alternate gene names: NA
Gene position: 3329749-3330132 (Clockwise)
Preceding gene: 119775919
Following gene: 119775921
Centisome position: 77.33
GC content: 55.99
Gene sequence:
>384_bases ATGAGACTGAATCAAATCACCCTGAGCGTGACCGATATGGCGGCCGCCGTGGAATTTTATCTGACACTGGGCGCGATACA GATAGTGGATACGCCGCACTATGCCCGCTTCGCCCTGCCTGAGGGTGACGAGAGTTTTTCCCTGCACCTGCGCAAGGAGC CGCCCTCACCGGGCCACTGTCTCTACTTTGAGAGTGAGCGACTGGACGAGTGGGTGGCAGAACTGAAATCCCGAGGCCTC TCTTTTAAAGGAGAGCCGGAAGATAAACCCTGGCTGTGGCGTGAGGCTGAACTGACCGACCCCAGCGGCAATACCATCAA GTTGTTTTATGCCGCCGAAAATCGCCTGAATCCCCCCTGGCGGGTGGAAAAACGTAAATACTGA
Upstream 100 bases:
>100_bases CCTGCTTGGCCACTACACTGAGCTGCTGTTGCCAATGCGTCAGTACCGGGATCCGTTTCGATACGGCATGTAACCACACC GCACTGACACAGGAGGCAAG
Downstream 100 bases:
>100_bases AATCAAATATTCGCACGCAATAACGACAAGGAACGCAATCATGGTACATCTGGAACACATTAATCTGGTCGTGCATGACC TGGAAAAGAGCCTGAACTTT
Product: glyoxalase/dioxygenase superfamily protein
Products: NA
Alternate protein names: Glyoxalase/Dioxygenase Superfamily Protein; Glyoxalase Family Protein; Glyoxylase; Phosphomethylpyrimidine Kinase
Number of amino acids: Translated: 127; Mature: 127
Protein sequence:
>127_residues MRLNQITLSVTDMAAAVEFYLTLGAIQIVDTPHYARFALPEGDESFSLHLRKEPPSPGHCLYFESERLDEWVAELKSRGL SFKGEPEDKPWLWREAELTDPSGNTIKLFYAAENRLNPPWRVEKRKY
Sequences:
>Translated_127_residues MRLNQITLSVTDMAAAVEFYLTLGAIQIVDTPHYARFALPEGDESFSLHLRKEPPSPGHCLYFESERLDEWVAELKSRGL SFKGEPEDKPWLWREAELTDPSGNTIKLFYAAENRLNPPWRVEKRKY >Mature_127_residues MRLNQITLSVTDMAAAVEFYLTLGAIQIVDTPHYARFALPEGDESFSLHLRKEPPSPGHCLYFESERLDEWVAELKSRGL SFKGEPEDKPWLWREAELTDPSGNTIKLFYAAENRLNPPWRVEKRKY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14726; Mature: 14726
Theoretical pI: Translated: 5.26; Mature: 5.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLNQITLSVTDMAAAVEFYLTLGAIQIVDTPHYARFALPEGDESFSLHLRKEPPSPGHC CCCCEEEEEHHHHHHHHHHHHHHCEEEEEECCCCEEEECCCCCCCEEEEEEECCCCCCEE LYFESERLDEWVAELKSRGLSFKGEPEDKPWLWREAELTDPSGNTIKLFYAAENRLNPPW EEECHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCCC RVEKRKY CCCCCCC >Mature Secondary Structure MRLNQITLSVTDMAAAVEFYLTLGAIQIVDTPHYARFALPEGDESFSLHLRKEPPSPGHC CCCCEEEEEHHHHHHHHHHHHHHCEEEEEECCCCEEEECCCCCCCEEEEEEECCCCCCEE LYFESERLDEWVAELKSRGLSFKGEPEDKPWLWREAELTDPSGNTIKLFYAAENRLNPPW EEECHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCCC RVEKRKY CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA