Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119775860

Identifier: 119775860

GI number: 119775860

Start: 3262619

End: 3263845

Strand: Direct

Name: 119775860

Synonym: Sama_2728

Alternate gene names: NA

Gene position: 3262619-3263845 (Clockwise)

Preceding gene: 119775859

Following gene: 119775861

Centisome position: 75.77

GC content: 51.92

Gene sequence:

>1227_bases
ATGATGCCCTTCATCACCCGATATGCCCGCCCCCTTTTTTGGGGCGCCATGGCCATCGCACTCGCCAGTGCAGGACTGCT
GTTCAAAGATCTGGCTGATGTCAGCCAATGGCTAATCCAATCCCCCCGCGAAAGCACCATGTGGGTGTGGTATCACAGGT
ATGCCCTCACGGCAGTGGCCATCATCAGTTTTGCCATCGCCCTCTGGGGTCTGAGCAGCCGTCCCAGCCTCACCAGTAAA
AAAGCGCTTGCCGCTTGCGTCATCTTGTTTGCCTTCCTGCTCTACAGCGGCATGATAAACCCCCACATCATGATGCGCGA
ACGCATGGACAATGGGGTCTTTGTCTCTGTGGAAACGGCCAGAAAATACTATGCCCCCGACGAGAGTGTGATTGTACTCG
ACATCAATGGTGCGGCCCGTGCCCACTCGGACAAACAGCTGCTGCGTCCCCATGTTGCCGGCAATGGAGAACTGGGCGGT
GAAAACGTAGTGATGACTTACTGTGGTCTCACCAATCTGGGGATGGCTTATACCCCTGAAATTGATGGTAAAGCCCTGCA
ACTGGCACCGATGAACCAGTTGGAAAACAACCTAGTGATGTGGGACAAGGTATCCGGGGAACCTATCCAGCAGCTTTGGG
GCCAAAAGGAAGCAGATATCAATCAGGGCGGCAGCGCAAAAATGCGTGAGTGGCCGACCTTCAGAATGCCGTTTTCCAAG
TTTGCTGAGGCCTATCCAAACGGCGAAGTGTTCCTGAATGATTATCTTGTGCAGGATATGAAGCCTTCATTTTGGGAAAA
CCCATTCCTCGCCATATATGACCCCATCATGGAAGCCATTTTTGACCACGCCATTGTAGATCAGGCAACCAATGAGGATC
CCACCTTCCCAACTATTCAGCACAAGGATCCACGTTTGCCCAATAAGACGCTGGTTTGGGGGCTGAATGTGGGCACTGAC
TATGTGGCCTATACCGAGGATTTTGTTCGCCAACACGCGCAGCCTATCAATACGGAAGTTGGCGGCAAGAACCTGGTCAT
TGCCTGGGACAATGAATACCAAAGCCTGGGGATTTACTACAACCCACATCAAGAACCTGTGGTAGAGATTGATTTCTTTG
GTCATTCCAACGTGGGAAAACTCAATCGGGTCGAAACCGTAAAGGCTGGAGCTTACTGGATAATCTGGGCCAACTTTTTC
CCCGAAACGGACATCAATCGCGTATAA

Upstream 100 bases:

>100_bases
TTCCAATTAATGGAACAGTTCATTGCATCCAGGCGGATTTATCCCGCTGATGACGGTTTTTACAATGATGGCAGAATTTT
TTGTCACCGGAGTTACGTCT

Downstream 100 bases:

>100_bases
CCCTGGCTTACATACACCGCCGGCACTCAGGCTGGCGGTTTTGTCACTGGCGGCTGCATAGGATAAAGTGTCCCCAATAC
AGCACAGAACAACGTCCCCC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 408; Mature: 408

Protein sequence:

>408_residues
MMPFITRYARPLFWGAMAIALASAGLLFKDLADVSQWLIQSPRESTMWVWYHRYALTAVAIISFAIALWGLSSRPSLTSK
KALAACVILFAFLLYSGMINPHIMMRERMDNGVFVSVETARKYYAPDESVIVLDINGAARAHSDKQLLRPHVAGNGELGG
ENVVMTYCGLTNLGMAYTPEIDGKALQLAPMNQLENNLVMWDKVSGEPIQQLWGQKEADINQGGSAKMREWPTFRMPFSK
FAEAYPNGEVFLNDYLVQDMKPSFWENPFLAIYDPIMEAIFDHAIVDQATNEDPTFPTIQHKDPRLPNKTLVWGLNVGTD
YVAYTEDFVRQHAQPINTEVGGKNLVIAWDNEYQSLGIYYNPHQEPVVEIDFFGHSNVGKLNRVETVKAGAYWIIWANFF
PETDINRV

Sequences:

>Translated_408_residues
MMPFITRYARPLFWGAMAIALASAGLLFKDLADVSQWLIQSPRESTMWVWYHRYALTAVAIISFAIALWGLSSRPSLTSK
KALAACVILFAFLLYSGMINPHIMMRERMDNGVFVSVETARKYYAPDESVIVLDINGAARAHSDKQLLRPHVAGNGELGG
ENVVMTYCGLTNLGMAYTPEIDGKALQLAPMNQLENNLVMWDKVSGEPIQQLWGQKEADINQGGSAKMREWPTFRMPFSK
FAEAYPNGEVFLNDYLVQDMKPSFWENPFLAIYDPIMEAIFDHAIVDQATNEDPTFPTIQHKDPRLPNKTLVWGLNVGTD
YVAYTEDFVRQHAQPINTEVGGKNLVIAWDNEYQSLGIYYNPHQEPVVEIDFFGHSNVGKLNRVETVKAGAYWIIWANFF
PETDINRV
>Mature_408_residues
MMPFITRYARPLFWGAMAIALASAGLLFKDLADVSQWLIQSPRESTMWVWYHRYALTAVAIISFAIALWGLSSRPSLTSK
KALAACVILFAFLLYSGMINPHIMMRERMDNGVFVSVETARKYYAPDESVIVLDINGAARAHSDKQLLRPHVAGNGELGG
ENVVMTYCGLTNLGMAYTPEIDGKALQLAPMNQLENNLVMWDKVSGEPIQQLWGQKEADINQGGSAKMREWPTFRMPFSK
FAEAYPNGEVFLNDYLVQDMKPSFWENPFLAIYDPIMEAIFDHAIVDQATNEDPTFPTIQHKDPRLPNKTLVWGLNVGTD
YVAYTEDFVRQHAQPINTEVGGKNLVIAWDNEYQSLGIYYNPHQEPVVEIDFFGHSNVGKLNRVETVKAGAYWIIWANFF
PETDINRV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 46146; Mature: 46146

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMPFITRYARPLFWGAMAIALASAGLLFKDLADVSQWLIQSPRESTMWVWYHRYALTAVA
CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHH
IISFAIALWGLSSRPSLTSKKALAACVILFAFLLYSGMINPHIMMRERMDNGVFVSVETA
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCEEEEEEHH
RKYYAPDESVIVLDINGAARAHSDKQLLRPHVAGNGELGGENVVMTYCGLTNLGMAYTPE
HHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCEECCC
IDGKALQLAPMNQLENNLVMWDKVSGEPIQQLWGQKEADINQGGSAKMREWPTFRMPFSK
CCCCEEEECCHHHHCCCEEEEECCCCCHHHHHCCCCCCCCCCCCCCCHHCCCCCCCCHHH
FAEAYPNGEVFLNDYLVQDMKPSFWENPFLAIYDPIMEAIFDHAIVDQATNEDPTFPTIQ
HHHHCCCCCEEEEHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
HKDPRLPNKTLVWGLNVGTDYVAYTEDFVRQHAQPINTEVGGKNLVIAWDNEYQSLGIYY
CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCEECEEE
NPHQEPVVEIDFFGHSNVGKLNRVETVKAGAYWIIWANFFPETDINRV
CCCCCCEEEEEECCCCCCCCCCCEEEEECCEEEEEEEECCCCCCCCCC
>Mature Secondary Structure
MMPFITRYARPLFWGAMAIALASAGLLFKDLADVSQWLIQSPRESTMWVWYHRYALTAVA
CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHH
IISFAIALWGLSSRPSLTSKKALAACVILFAFLLYSGMINPHIMMRERMDNGVFVSVETA
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCEEEEEEHH
RKYYAPDESVIVLDINGAARAHSDKQLLRPHVAGNGELGGENVVMTYCGLTNLGMAYTPE
HHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCEECCC
IDGKALQLAPMNQLENNLVMWDKVSGEPIQQLWGQKEADINQGGSAKMREWPTFRMPFSK
CCCCEEEECCHHHHCCCEEEEECCCCCHHHHHCCCCCCCCCCCCCCCHHCCCCCCCCHHH
FAEAYPNGEVFLNDYLVQDMKPSFWENPFLAIYDPIMEAIFDHAIVDQATNEDPTFPTIQ
HHHHCCCCCEEEEHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
HKDPRLPNKTLVWGLNVGTDYVAYTEDFVRQHAQPINTEVGGKNLVIAWDNEYQSLGIYY
CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCEECEEE
NPHQEPVVEIDFFGHSNVGKLNRVETVKAGAYWIIWANFFPETDINRV
CCCCCCEEEEEECCCCCCCCCCCEEEEECCEEEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA