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The map label for this gene is 119775815

Identifier: 119775815

GI number: 119775815

Start: 3213020

End: 3213679

Strand: Direct

Name: 119775815

Synonym: Sama_2683

Alternate gene names: NA

Gene position: 3213020-3213679 (Clockwise)

Preceding gene: 119775814

Following gene: 119775816

Centisome position: 74.61

GC content: 52.12

Gene sequence:

>660_bases
ATGACAAACAAGCACACACAGTCAGCCATCTTCATTGGCAAATCCTTATCCATACTGGCGTTGCTGCTGGCATTCGCCGG
TTTCCAGGTACAGGCACAGATGCCGGTACTCAAAGGCATTGGCGGCGACTTCAGCATGCAAAGCAGCAAAGGGACTCAGG
TCAACCTCAGTGACTTTCGCGGCAAGGTGGTCATGATGTTTTTTGGCTACACCAATTGCGCCGACATTTGCCCTACCACC
ATGGCTCACATCAGCCAATTGATGCAAAAAATGCCAGCAGAGGAACGCGCCCGTATTCAGGTACTCTTTGTCAGCATCGA
CAGCGATTACGACACCCCCAAACACCTCAATAAATATCTGAGTTACTTTGACCCCAGCTTTATCGGCCTGGTGGACGAGC
GGGCCAAAATTGATGAAGTAGCCGCCATGTACCATGCCGACTACAGCAAGCTTGCCGACGATAAGGTCACGACCGAATAC
AAAAAACTCAGCCTCGAACGCCAGGGCAGCGCCGGCAAGGGCTACCTCTACTCCCATACCGCCAAGATTTTTGTACTCGA
CCCCGAAGGGCGGGTGCGGGGTTTCTTCTACACAGGTACGCCGCTGGACGAGATGCAGGCGGATATTTCCTCACTGCTTA
ATACTCAGGCAAAAAGTTAA

Upstream 100 bases:

>100_bases
TGACCGATGGGCAGGCAGTGATTTCTGCGTACAGGGAGCGCTTTCTCCCGCCAGTAACCGACCTTGGCGCCGAAATCCGG
TGCTGAACCAGGAGACCCTT

Downstream 100 bases:

>100_bases
TCCGACAGTGACATCAATTCAGCTACATGAAAGGAAAACAAGATGATATTCAACCTCAAACAGCTCCTGAAACCCGCCCT
GCTGCTGGCCCTGTTGAATA

Product: electron transport protein SCO1/SenC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 218

Protein sequence:

>219_residues
MTNKHTQSAIFIGKSLSILALLLAFAGFQVQAQMPVLKGIGGDFSMQSSKGTQVNLSDFRGKVVMMFFGYTNCADICPTT
MAHISQLMQKMPAEERARIQVLFVSIDSDYDTPKHLNKYLSYFDPSFIGLVDERAKIDEVAAMYHADYSKLADDKVTTEY
KKLSLERQGSAGKGYLYSHTAKIFVLDPEGRVRGFFYTGTPLDEMQADISSLLNTQAKS

Sequences:

>Translated_219_residues
MTNKHTQSAIFIGKSLSILALLLAFAGFQVQAQMPVLKGIGGDFSMQSSKGTQVNLSDFRGKVVMMFFGYTNCADICPTT
MAHISQLMQKMPAEERARIQVLFVSIDSDYDTPKHLNKYLSYFDPSFIGLVDERAKIDEVAAMYHADYSKLADDKVTTEY
KKLSLERQGSAGKGYLYSHTAKIFVLDPEGRVRGFFYTGTPLDEMQADISSLLNTQAKS
>Mature_218_residues
TNKHTQSAIFIGKSLSILALLLAFAGFQVQAQMPVLKGIGGDFSMQSSKGTQVNLSDFRGKVVMMFFGYTNCADICPTTM
AHISQLMQKMPAEERARIQVLFVSIDSDYDTPKHLNKYLSYFDPSFIGLVDERAKIDEVAAMYHADYSKLADDKVTTEYK
KLSLERQGSAGKGYLYSHTAKIFVLDPEGRVRGFFYTGTPLDEMQADISSLLNTQAKS

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI4759068, Length=180, Percent_Identity=25, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI281182727, Length=150, Percent_Identity=26, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI281182722, Length=150, Percent_Identity=26, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI281182716, Length=150, Percent_Identity=26, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI153791313, Length=150, Percent_Identity=26, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17531419, Length=182, Percent_Identity=23.0769230769231, Blast_Score=75, Evalue=3e-14,
Organism=Saccharomyces cerevisiae, GI6319498, Length=153, Percent_Identity=28.1045751633987, Blast_Score=85, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6319511, Length=152, Percent_Identity=26.3157894736842, Blast_Score=79, Evalue=4e-16,
Organism=Drosophila melanogaster, GI19920710, Length=178, Percent_Identity=25.8426966292135, Blast_Score=75, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 24373; Mature: 24242

Theoretical pI: Translated: 7.61; Mature: 7.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNKHTQSAIFIGKSLSILALLLAFAGFQVQAQMPVLKGIGGDFSMQSSKGTQVNLSDFR
CCCCCCCCEEEECCCHHHHHHHHHHCCCEEEECCCHHHCCCCCCEECCCCCCEEEHHHCC
GKVVMMFFGYTNCADICPTTMAHISQLMQKMPAEERARIQVLFVSIDSDYDTPKHLNKYL
CEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCHHHHHHHH
SYFDPSFIGLVDERAKIDEVAAMYHADYSKLADDKVTTEYKKLSLERQGSAGKGYLYSHT
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEEEE
AKIFVLDPEGRVRGFFYTGTPLDEMQADISSLLNTQAKS
EEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TNKHTQSAIFIGKSLSILALLLAFAGFQVQAQMPVLKGIGGDFSMQSSKGTQVNLSDFR
CCCCCCCEEEECCCHHHHHHHHHHCCCEEEECCCHHHCCCCCCEECCCCCCEEEHHHCC
GKVVMMFFGYTNCADICPTTMAHISQLMQKMPAEERARIQVLFVSIDSDYDTPKHLNKYL
CEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCHHHHHHHH
SYFDPSFIGLVDERAKIDEVAAMYHADYSKLADDKVTTEYKKLSLERQGSAGKGYLYSHT
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEEEE
AKIFVLDPEGRVRGFFYTGTPLDEMQADISSLLNTQAKS
EEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA