| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775799
Identifier: 119775799
GI number: 119775799
Start: 3194014
End: 3194427
Strand: Direct
Name: 119775799
Synonym: Sama_2667
Alternate gene names: NA
Gene position: 3194014-3194427 (Clockwise)
Preceding gene: 119775798
Following gene: 119775800
Centisome position: 74.17
GC content: 49.28
Gene sequence:
>414_bases ATGAATATCCACGCTATCGCCAATCATCTTAATGGACTGGGTGACAACAGCCAGACCGGTTTCAGGTTTGATTGTTATCC CATCGAAGGTGATGTGGAGGTACTGCAGGTCAATATCGTAGGCCGGGAGGAGATCCCGATTTTTGTGTCGGTTACCGATA ATCAGGTGCTCTGTATCAGCTACCTGTGGGGTGAAGACGAAGTCAAAACCGAAACCCGCGCCGAGATGTTTGAAACCATG CTGGAGCTGAACATTCCCATGCCACTGTCGGCCTTTGCCAAAATTGACGACAAATATGTGGTGTATGGCGCTCTGTCACT CAAATCCAGCATGGCCGAAATCGAGCAGGAACTGAGTGTCCTGTCCGACAACTGTCTCGAAGTTATTGCCGAAATGGCCG ATTACCTGAACTAA
Upstream 100 bases:
>100_bases AGGCTACACACGGGGCGAAAAAACGACCAAGATAACGCTTGACATATTATGTCCCGATGTTATCTTGAACCACAGACATA TTATGTCAGAGAGGACAACT
Downstream 100 bases:
>100_bases GGAGCTGCATTATGGGCATTCTCAACAAGATCCTGACCGCCTTTCGCGGTGGCGCCAACGAAGTAGGCCAAAGCATTGTC GACGCCAATGCCACACGCAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 137; Mature: 137
Protein sequence:
>137_residues MNIHAIANHLNGLGDNSQTGFRFDCYPIEGDVEVLQVNIVGREEIPIFVSVTDNQVLCISYLWGEDEVKTETRAEMFETM LELNIPMPLSAFAKIDDKYVVYGALSLKSSMAEIEQELSVLSDNCLEVIAEMADYLN
Sequences:
>Translated_137_residues MNIHAIANHLNGLGDNSQTGFRFDCYPIEGDVEVLQVNIVGREEIPIFVSVTDNQVLCISYLWGEDEVKTETRAEMFETM LELNIPMPLSAFAKIDDKYVVYGALSLKSSMAEIEQELSVLSDNCLEVIAEMADYLN >Mature_137_residues MNIHAIANHLNGLGDNSQTGFRFDCYPIEGDVEVLQVNIVGREEIPIFVSVTDNQVLCISYLWGEDEVKTETRAEMFETM LELNIPMPLSAFAKIDDKYVVYGALSLKSSMAEIEQELSVLSDNCLEVIAEMADYLN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15356; Mature: 15356
Theoretical pI: Translated: 3.83; Mature: 3.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 6.6 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 4.4 %Met (Mature Protein) 6.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNIHAIANHLNGLGDNSQTGFRFDCYPIEGDVEVLQVNIVGREEIPIFVSVTDNQVLCIS CCHHHHHHHHCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCCEEEEECCCCEEEEE YLWGEDEVKTETRAEMFETMLELNIPMPLSAFAKIDDKYVVYGALSLKSSMAEIEQELSV EEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHH LSDNCLEVIAEMADYLN HHHHHHHHHHHHHHHCC >Mature Secondary Structure MNIHAIANHLNGLGDNSQTGFRFDCYPIEGDVEVLQVNIVGREEIPIFVSVTDNQVLCIS CCHHHHHHHHCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCCEEEEECCCCEEEEE YLWGEDEVKTETRAEMFETMLELNIPMPLSAFAKIDDKYVVYGALSLKSSMAEIEQELSV EEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHH LSDNCLEVIAEMADYLN HHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA