Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

Click here to switch to the map view.

The map label for this gene is 119775799

Identifier: 119775799

GI number: 119775799

Start: 3194014

End: 3194427

Strand: Direct

Name: 119775799

Synonym: Sama_2667

Alternate gene names: NA

Gene position: 3194014-3194427 (Clockwise)

Preceding gene: 119775798

Following gene: 119775800

Centisome position: 74.17

GC content: 49.28

Gene sequence:

>414_bases
ATGAATATCCACGCTATCGCCAATCATCTTAATGGACTGGGTGACAACAGCCAGACCGGTTTCAGGTTTGATTGTTATCC
CATCGAAGGTGATGTGGAGGTACTGCAGGTCAATATCGTAGGCCGGGAGGAGATCCCGATTTTTGTGTCGGTTACCGATA
ATCAGGTGCTCTGTATCAGCTACCTGTGGGGTGAAGACGAAGTCAAAACCGAAACCCGCGCCGAGATGTTTGAAACCATG
CTGGAGCTGAACATTCCCATGCCACTGTCGGCCTTTGCCAAAATTGACGACAAATATGTGGTGTATGGCGCTCTGTCACT
CAAATCCAGCATGGCCGAAATCGAGCAGGAACTGAGTGTCCTGTCCGACAACTGTCTCGAAGTTATTGCCGAAATGGCCG
ATTACCTGAACTAA

Upstream 100 bases:

>100_bases
AGGCTACACACGGGGCGAAAAAACGACCAAGATAACGCTTGACATATTATGTCCCGATGTTATCTTGAACCACAGACATA
TTATGTCAGAGAGGACAACT

Downstream 100 bases:

>100_bases
GGAGCTGCATTATGGGCATTCTCAACAAGATCCTGACCGCCTTTCGCGGTGGCGCCAACGAAGTAGGCCAAAGCATTGTC
GACGCCAATGCCACACGCAT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 137; Mature: 137

Protein sequence:

>137_residues
MNIHAIANHLNGLGDNSQTGFRFDCYPIEGDVEVLQVNIVGREEIPIFVSVTDNQVLCISYLWGEDEVKTETRAEMFETM
LELNIPMPLSAFAKIDDKYVVYGALSLKSSMAEIEQELSVLSDNCLEVIAEMADYLN

Sequences:

>Translated_137_residues
MNIHAIANHLNGLGDNSQTGFRFDCYPIEGDVEVLQVNIVGREEIPIFVSVTDNQVLCISYLWGEDEVKTETRAEMFETM
LELNIPMPLSAFAKIDDKYVVYGALSLKSSMAEIEQELSVLSDNCLEVIAEMADYLN
>Mature_137_residues
MNIHAIANHLNGLGDNSQTGFRFDCYPIEGDVEVLQVNIVGREEIPIFVSVTDNQVLCISYLWGEDEVKTETRAEMFETM
LELNIPMPLSAFAKIDDKYVVYGALSLKSSMAEIEQELSVLSDNCLEVIAEMADYLN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15356; Mature: 15356

Theoretical pI: Translated: 3.83; Mature: 3.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIHAIANHLNGLGDNSQTGFRFDCYPIEGDVEVLQVNIVGREEIPIFVSVTDNQVLCIS
CCHHHHHHHHCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCCEEEEECCCCEEEEE
YLWGEDEVKTETRAEMFETMLELNIPMPLSAFAKIDDKYVVYGALSLKSSMAEIEQELSV
EEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHH
LSDNCLEVIAEMADYLN
HHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNIHAIANHLNGLGDNSQTGFRFDCYPIEGDVEVLQVNIVGREEIPIFVSVTDNQVLCIS
CCHHHHHHHHCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCCEEEEECCCCEEEEE
YLWGEDEVKTETRAEMFETMLELNIPMPLSAFAKIDDKYVVYGALSLKSSMAEIEQELSV
EEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHH
LSDNCLEVIAEMADYLN
HHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA