Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119775787

Identifier: 119775787

GI number: 119775787

Start: 3179729

End: 3180625

Strand: Direct

Name: 119775787

Synonym: Sama_2655

Alternate gene names: NA

Gene position: 3179729-3180625 (Clockwise)

Preceding gene: 119775786

Following gene: 119775788

Centisome position: 73.84

GC content: 53.85

Gene sequence:

>897_bases
ATGAACAAGAAACGTCTGGGTCTTTGCGCACTTAGCTTGTGTGCAGCAGCGCTGAGTCAACATAGCATCGCCGGTGAAGA
TCTTTTCGGTTACCTCAAGGGCGCCGAAGCCCTGCCCGAAGGAGCCTCTGAGCTGTACCAAAAAGTCACAGTACGTGACG
GAAAGAGCGTGGGGTCGTATCAGGGCATCGACTTCGAAACCGAGTACGAATACGGGGTTTCCAACAAGTTTTCTTCATCG
GTATCGGCCAAATTCATGTCGCTGGATACCGATGGCCTTTCAGTTGACGGCTATCTGCCAGGTGCCAAGGATATAGGTTT
CAAAGCCTCCGGCGCGGAACTGGGAATGGCTTACATGTTCCTCAGCCCCGCCAAAGACGATTTGGGTTTACAGGCCAGCC
TGTCATTGGACTACGACTGGATTGACAAGCACTCGGGCTACGACAAAGACACACTGTCACTGGAGCTGGGCCTCCAGACT
CAAAAGTACTTCATGGAAGGTGAGCTGGTTTGGCTTGGTAATATGGCGGTGGAAACCACCTACGCCGACCGTGCTCCCAT
CGATAACCTGCCGGAAGATTTTGACTGGCCAACCGATCCGGAAATGGAGATTGAGCTGAAATTCGGCACCGGCCTGAGCT
ATCGCTTCGCCCCCAACTGGTTTGTCAGCGCCGAAGTACTCTACGAGACCGAATTTGAAACCGAAGTAGGTCAGGAGCGC
TGGTCATGGTTCGCCGGTCCTTCACTGCATTACGGCAGCGCCAACTGGTGGGCCACCCTGACATGGCTGCCGCAGCTTGC
CGGTGGTGGTGAGCAGTTTGACGGCCAGGATACCGACCTGCATCTGATTGAAAAAACAGAGCAGGAATGGCGCTTTAAAA
TTGCCTACAACTTCTGA

Upstream 100 bases:

>100_bases
AATCCATGACAATAATTAATGCGAACTATTTTCATATGCATTACATTTCACTAAAATGCCCGCCAGATCGGATATCAATC
ATTTCAAGATGGGAATTTAC

Downstream 100 bases:

>100_bases
TTGCAGAATGGGGCGTCCGTTGGCGCCCCTTTTGGAGAATCACAATGTCTGACTCCCTGTTAACCAACAGCCTCTGGTTT
ATCCCCATGGCTTTTGTTGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MNKKRLGLCALSLCAAALSQHSIAGEDLFGYLKGAEALPEGASELYQKVTVRDGKSVGSYQGIDFETEYEYGVSNKFSSS
VSAKFMSLDTDGLSVDGYLPGAKDIGFKASGAELGMAYMFLSPAKDDLGLQASLSLDYDWIDKHSGYDKDTLSLELGLQT
QKYFMEGELVWLGNMAVETTYADRAPIDNLPEDFDWPTDPEMEIELKFGTGLSYRFAPNWFVSAEVLYETEFETEVGQER
WSWFAGPSLHYGSANWWATLTWLPQLAGGGEQFDGQDTDLHLIEKTEQEWRFKIAYNF

Sequences:

>Translated_298_residues
MNKKRLGLCALSLCAAALSQHSIAGEDLFGYLKGAEALPEGASELYQKVTVRDGKSVGSYQGIDFETEYEYGVSNKFSSS
VSAKFMSLDTDGLSVDGYLPGAKDIGFKASGAELGMAYMFLSPAKDDLGLQASLSLDYDWIDKHSGYDKDTLSLELGLQT
QKYFMEGELVWLGNMAVETTYADRAPIDNLPEDFDWPTDPEMEIELKFGTGLSYRFAPNWFVSAEVLYETEFETEVGQER
WSWFAGPSLHYGSANWWATLTWLPQLAGGGEQFDGQDTDLHLIEKTEQEWRFKIAYNF
>Mature_298_residues
MNKKRLGLCALSLCAAALSQHSIAGEDLFGYLKGAEALPEGASELYQKVTVRDGKSVGSYQGIDFETEYEYGVSNKFSSS
VSAKFMSLDTDGLSVDGYLPGAKDIGFKASGAELGMAYMFLSPAKDDLGLQASLSLDYDWIDKHSGYDKDTLSLELGLQT
QKYFMEGELVWLGNMAVETTYADRAPIDNLPEDFDWPTDPEMEIELKFGTGLSYRFAPNWFVSAEVLYETEFETEVGQER
WSWFAGPSLHYGSANWWATLTWLPQLAGGGEQFDGQDTDLHLIEKTEQEWRFKIAYNF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33293; Mature: 33293

Theoretical pI: Translated: 4.09; Mature: 4.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKKRLGLCALSLCAAALSQHSIAGEDLFGYLKGAEALPEGASELYQKVTVRDGKSVGSY
CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCC
QGIDFETEYEYGVSNKFSSSVSAKFMSLDTDGLSVDGYLPGAKDIGFKASGAELGMAYMF
CCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEECCCCCCCCCCCEECCCCHHCEEEEE
LSPAKDDLGLQASLSLDYDWIDKHSGYDKDTLSLELGLQTQKYFMEGELVWLGNMAVETT
ECCCCCCCCCEEEEECCCHHHHCCCCCCCCEEEEEECCCHHEEEECCCEEEECCEEEEEE
YADRAPIDNLPEDFDWPTDPEMEIELKFGTGLSYRFAPNWFVSAEVLYETEFETEVGQER
CCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEECCCEEEEEEEEEEECCHHHHHHHH
WSWFAGPSLHYGSANWWATLTWLPQLAGGGEQFDGQDTDLHLIEKTEQEWRFKIAYNF
HHEECCCEEECCCCCEEEEEEEHHHHCCCCCCCCCCCCCEEEEECCCCCEEEEEEECC
>Mature Secondary Structure
MNKKRLGLCALSLCAAALSQHSIAGEDLFGYLKGAEALPEGASELYQKVTVRDGKSVGSY
CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCC
QGIDFETEYEYGVSNKFSSSVSAKFMSLDTDGLSVDGYLPGAKDIGFKASGAELGMAYMF
CCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEECCCCCCCCCCCEECCCCHHCEEEEE
LSPAKDDLGLQASLSLDYDWIDKHSGYDKDTLSLELGLQTQKYFMEGELVWLGNMAVETT
ECCCCCCCCCEEEEECCCHHHHCCCCCCCCEEEEEECCCHHEEEECCCEEEECCEEEEEE
YADRAPIDNLPEDFDWPTDPEMEIELKFGTGLSYRFAPNWFVSAEVLYETEFETEVGQER
CCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEECCCEEEEEEEEEEECCHHHHHHHH
WSWFAGPSLHYGSANWWATLTWLPQLAGGGEQFDGQDTDLHLIEKTEQEWRFKIAYNF
HHEECCCEEECCCCCEEEEEEEHHHHCCCCCCCCCCCCCEEEEECCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA