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The map label for this gene is ybeD [C]

Identifier: 119775725

GI number: 119775725

Start: 3101547

End: 3101813

Strand: Direct

Name: ybeD [C]

Synonym: Sama_2593

Alternate gene names: 119775725

Gene position: 3101547-3101813 (Clockwise)

Preceding gene: 119775724

Following gene: 119775726

Centisome position: 72.03

GC content: 51.31

Gene sequence:

>267_bases
ATGCTAAACACCACTTTTGACCAATATCTGGAGTTTCCTTGTTCATTCCCCTTCAAAGTTGTGGGAGATGCCAGCGAGAC
TTTGGCCGATCGCGTGGTCGCCGTGGTTCAGCAACATGCTCCAGGTGATTACAGCCCAACCAGCAAGGTATCCAGCAAGG
GCACATACCTGTCTGTAACCATTCGCGTTACCGTCACCAGCAAGGACCACATCGAAACCCTGTACACATCCCTTGCCGCC
ATCGAAGGCGTAAAACGGGTACTTTAA

Upstream 100 bases:

>100_bases
AATGCCACCTTCGGGTGGCATTTTTTTCGCCCCCAGACCTTGATTGGGCTATAATCGCCGCCATATTTGAGGCCCAAGCC
CACGACAGAGACAATCGACT

Downstream 100 bases:

>100_bases
TTATTCCGGCGCGCCCTGTAAGCGCTTCTGTGTTACATTTCGGCATCCGCGGCGTATAATGCCGCCACGCTGAACCTGAG
GGGAGAGGTAGCCCTTGCAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 88; Mature: 88

Protein sequence:

>88_residues
MLNTTFDQYLEFPCSFPFKVVGDASETLADRVVAVVQQHAPGDYSPTSKVSSKGTYLSVTIRVTVTSKDHIETLYTSLAA
IEGVKRVL

Sequences:

>Translated_88_residues
MLNTTFDQYLEFPCSFPFKVVGDASETLADRVVAVVQQHAPGDYSPTSKVSSKGTYLSVTIRVTVTSKDHIETLYTSLAA
IEGVKRVL
>Mature_88_residues
MLNTTFDQYLEFPCSFPFKVVGDASETLADRVVAVVQQHAPGDYSPTSKVSSKGTYLSVTIRVTVTSKDHIETLYTSLAA
IEGVKRVL

Specific function: Unknown

COG id: COG2921

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0250 family

Homologues:

Organism=Escherichia coli, GI1786850, Length=87, Percent_Identity=50.5747126436782, Blast_Score=91, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2593_SHEAM (A1S8T9)

Other databases:

- EMBL:   CP000507
- RefSeq:   YP_928465.1
- ProteinModelPortal:   A1S8T9
- SMR:   A1S8T9
- STRING:   A1S8T9
- GeneID:   4604840
- GenomeReviews:   CP000507_GR
- KEGG:   saz:Sama_2593
- NMPDR:   fig|326297.7.peg.2431
- eggNOG:   COG2921
- HOGENOM:   HBG297220
- OMA:   TSKEHIE
- PhylomeDB:   A1S8T9
- ProtClustDB:   PRK04998
- HAMAP:   MF_00659
- InterPro:   IPR007454

Pfam domain/function: PF04359 DUF493

EC number: NA

Molecular weight: Translated: 9627; Mature: 9627

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNTTFDQYLEFPCSFPFKVVGDASETLADRVVAVVQQHAPGDYSPTSKVSSKGTYLSVT
CCCCCHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEE
IRVTVTSKDHIETLYTSLAAIEGVKRVL
EEEEECCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLNTTFDQYLEFPCSFPFKVVGDASETLADRVVAVVQQHAPGDYSPTSKVSSKGTYLSVT
CCCCCHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEE
IRVTVTSKDHIETLYTSLAAIEGVKRVL
EEEEECCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA