Click here to switch to the map view.

The map label for this gene is lptE [H]

Identifier: 119775715

GI number: 119775715

Start: 3092296

End: 3092790

Strand: Direct

Name: lptE [H]

Synonym: Sama_2583

Alternate gene names: 119775715

Gene position: 3092296-3092790 (Clockwise)

Preceding gene: 119775714

Following gene: 119775716

Centisome position: 71.81

GC content: 56.97

Gene sequence:

>495_bases
ATGGTTAGAACATTGCTTACCGCCATTTTGGGTTTGGCGTTGCTCACTGGTGTCACAGGCTGCGGCTTTCGTCTTCAGGG
CAGTTATCAAATTCCGGCCTCTCTCAAGCAATTGAGTGTCGACAGCGCCGATGAATACAGCGAGCTGACCCGCTTGGTGA
AAGACCGCCTGCGCCTGTCAGGTGTGAATGTGGTCGCGTCAAATTCGAAGGTGCCTTCGGTGCGGTTACTGCGTGACACC
CTCGAGCGCACTACACTCTCGCTTTACCCCACCGGCCATGTCGCCGAGTACGAGCTGATATACCATGTCGACTTTGCCGT
GGCTTTTCCCGGTGAAGAGGCCAAACCCTTCAGCGTGGAAATCCGCCGCGACTATCTGGATGACCCCCGCACCGCACTGG
CCAAAAGCCGTGAAATGGAGCTGCTGCTCAAAGAAATGCGCCAGCAAGCCGCCGACAACCTTATCCAAACCCTGTCGTCC
CTCGGGGAGCGCTGA

Upstream 100 bases:

>100_bases
ACTGACCTGTAGCCTGCGACACTGTCGCCGGTTCAGGGGATTGAAGAAAAACCCGCTGCGGCGGGTTTTTCTGCTTAACA
AAAGGAAGAAGCATTTCGCC

Downstream 100 bases:

>100_bases
TGCGGGTCTATCCTGAGCAGCTGGGCCGCCACCTGACACCGTTAGCCCAATGTTACTGCTTGTTCGGTGACGATGCCTGG
TTGATAGAAAACGCCCGCAC

Product: rare lipoprotein B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 164; Mature: 164

Protein sequence:

>164_residues
MVRTLLTAILGLALLTGVTGCGFRLQGSYQIPASLKQLSVDSADEYSELTRLVKDRLRLSGVNVVASNSKVPSVRLLRDT
LERTTLSLYPTGHVAEYELIYHVDFAVAFPGEEAKPFSVEIRRDYLDDPRTALAKSREMELLLKEMRQQAADNLIQTLSS
LGER

Sequences:

>Translated_164_residues
MVRTLLTAILGLALLTGVTGCGFRLQGSYQIPASLKQLSVDSADEYSELTRLVKDRLRLSGVNVVASNSKVPSVRLLRDT
LERTTLSLYPTGHVAEYELIYHVDFAVAFPGEEAKPFSVEIRRDYLDDPRTALAKSREMELLLKEMRQQAADNLIQTLSS
LGER
>Mature_164_residues
MVRTLLTAILGLALLTGVTGCGFRLQGSYQIPASLKQLSVDSADEYSELTRLVKDRLRLSGVNVVASNSKVPSVRLLRDT
LERTTLSLYPTGHVAEYELIYHVDFAVAFPGEEAKPFSVEIRRDYLDDPRTALAKSREMELLLKEMRQQAADNLIQTLSS
LGER

Specific function: Together with lptD, is involved in the assembly of LPS in the outer leaflet of the outer membrane [H]

COG id: COG2980

COG function: function code M; Rare lipoprotein B

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptE lipoprotein family [H]

Homologues:

Organism=Escherichia coli, GI1786860, Length=163, Percent_Identity=36.8098159509202, Blast_Score=117, Evalue=3e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007485 [H]

Pfam domain/function: PF04390 RplB [H]

EC number: NA

Molecular weight: Translated: 18270; Mature: 18270

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRTLLTAILGLALLTGVTGCGFRLQGSYQIPASLKQLSVDSADEYSELTRLVKDRLRLS
CHHHHHHHHHHHHHHHCCCCCCEEEECCEECCHHHHHHCCCCCHHHHHHHHHHHHHHHHC
GVNVVASNSKVPSVRLLRDTLERTTLSLYPTGHVAEYELIYHVDFAVAFPGEEAKPFSVE
CCEEEECCCCCCHHHHHHHHHHHHEEEECCCCCCEEEEEEEEEEEEEECCCCCCCCCEEE
IRRDYLDDPRTALAKSREMELLLKEMRQQAADNLIQTLSSLGER
EEHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVRTLLTAILGLALLTGVTGCGFRLQGSYQIPASLKQLSVDSADEYSELTRLVKDRLRLS
CHHHHHHHHHHHHHHHCCCCCCEEEECCEECCHHHHHHCCCCCHHHHHHHHHHHHHHHHC
GVNVVASNSKVPSVRLLRDTLERTTLSLYPTGHVAEYELIYHVDFAVAFPGEEAKPFSVE
CCEEEECCCCCCHHHHHHHHHHHHEEEECCCCCCEEEEEEEEEEEEEECCCCCCCCCEEE
IRRDYLDDPRTALAKSREMELLLKEMRQQAADNLIQTLSSLGER
EEHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA