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The map label for this gene is ybeY [C]

Identifier: 119775709

GI number: 119775709

Start: 3084609

End: 3085070

Strand: Direct

Name: ybeY [C]

Synonym: Sama_2577

Alternate gene names: 119775709

Gene position: 3084609-3085070 (Clockwise)

Preceding gene: 119775708

Following gene: 119775710

Centisome position: 71.63

GC content: 53.03

Gene sequence:

>462_bases
ATGGCGCTTGAACTGGCGTTGGATCTGCAATTTGCTGTGAATCCCGGTAATTTGCCCACAGAAGCAGAGTTTGAGACCTG
GGTACGTGTCGCCCTTGGCGATACCCTCGATGAAGCCGAGCTGACCATTCGCATTGTGGATGCCACCGAGAGTCAGCAGC
TTAATCGCGACTACCGCGGCAAAGACAAACCCACCAATGTATTGTCGTTCCCCTTTGAGGCGCCTCCCGGAATGGAACTG
CCTCTGCTTGGGGATCTTGTCATTTGTGCGTCTGTCGTTGAAAATGAGGCCCTTGAGCAACATAAGGCCCTCGAGGCCCA
CTGGGCTCACATGGTTGTACATGGTTGCCTGCATCTGCTAGGTTATGACCATATTGACGATGCCGAAGCTGAAGAAATGG
AAGCGCTGGAAACCACGCTTCTGACTGGCCTTGGTTACCCCGATCCCTATAAGGAGCAATAA

Upstream 100 bases:

>100_bases
GAAGAGTTCGAAGCCAAACAGCAGGCAAACAAAGGCCGTCACGACAGCCAATACCGTCTGGCAGACAGCCCTCAGGCAGA
CACCGCCGAAGGAGAACCCC

Downstream 100 bases:

>100_bases
TCGGCCCTTTATTGAGCCGTGAAAATCACTATGAGTGACGACATACCCCCGAGTAGCAACGCCCAAAAGAAAGGCTGGTT
AGAACGCGTTAGTCAGTTAT

Product: putative metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 152

Protein sequence:

>153_residues
MALELALDLQFAVNPGNLPTEAEFETWVRVALGDTLDEAELTIRIVDATESQQLNRDYRGKDKPTNVLSFPFEAPPGMEL
PLLGDLVICASVVENEALEQHKALEAHWAHMVVHGCLHLLGYDHIDDAEAEEMEALETTLLTGLGYPDPYKEQ

Sequences:

>Translated_153_residues
MALELALDLQFAVNPGNLPTEAEFETWVRVALGDTLDEAELTIRIVDATESQQLNRDYRGKDKPTNVLSFPFEAPPGMEL
PLLGDLVICASVVENEALEQHKALEAHWAHMVVHGCLHLLGYDHIDDAEAEEMEALETTLLTGLGYPDPYKEQ
>Mature_152_residues
ALELALDLQFAVNPGNLPTEAEFETWVRVALGDTLDEAELTIRIVDATESQQLNRDYRGKDKPTNVLSFPFEAPPGMELP
LLGDLVICASVVENEALEQHKALEAHWAHMVVHGCLHLLGYDHIDDAEAEEMEALETTLLTGLGYPDPYKEQ

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=148, Percent_Identity=65.5405405405405, Blast_Score=183, Evalue=5e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_SHEAM (A1S8S3)

Other databases:

- EMBL:   CP000507
- RefSeq:   YP_928449.1
- ProteinModelPortal:   A1S8S3
- SMR:   A1S8S3
- STRING:   A1S8S3
- GeneID:   4604824
- GenomeReviews:   CP000507_GR
- KEGG:   saz:Sama_2577
- eggNOG:   COG0319
- HOGENOM:   HBG734136
- OMA:   FTDPYKE
- PhylomeDB:   A1S8S3
- ProtClustDB:   PRK00016
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 16996; Mature: 16865

Theoretical pI: Translated: 3.98; Mature: 3.98

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALELALDLQFAVNPGNLPTEAEFETWVRVALGDTLDEAELTIRIVDATESQQLNRDYRG
CEEEEEEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHCCCCCC
KDKPTNVLSFPFEAPPGMELPLLGDLVICASVVENEALEQHKALEAHWAHMVVHGCLHLL
CCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GYDHIDDAEAEEMEALETTLLTGLGYPDPYKEQ
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
ALELALDLQFAVNPGNLPTEAEFETWVRVALGDTLDEAELTIRIVDATESQQLNRDYRG
EEEEEEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHCCCCCC
KDKPTNVLSFPFEAPPGMELPLLGDLVICASVVENEALEQHKALEAHWAHMVVHGCLHLL
CCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GYDHIDDAEAEEMEALETTLLTGLGYPDPYKEQ
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA