Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119775694

Identifier: 119775694

GI number: 119775694

Start: 3068495

End: 3069733

Strand: Reverse

Name: 119775694

Synonym: Sama_2562

Alternate gene names: NA

Gene position: 3069733-3068495 (Counterclockwise)

Preceding gene: 119775695

Following gene: 119775693

Centisome position: 71.29

GC content: 56.58

Gene sequence:

>1239_bases
ATGACAACGGCGCCATTGGTTACCAACGACGCAACCGTACTGGGTTTTTTGGCCATTATTCTGGGATTTGTGTTTTACAC
CCACAGCCACCCCAGCTGGCAAAAATTCTATAAATTCGTCCCGGCGTTGCTGCTGTGCTACTTCCTGCCTTCGCTGCTCA
ATACGTTCGGCATAGTCGATGGCCACAGCTCTCAGCTGTACTTTGTCGCCACCCGCTATTTGCTGCCCGCCTGTTTGGTG
TTGCTGATTCTGTCGGTGGACCTCAAGGCCATCATGGGGCTGGGGCCCAAGGCTGTGGTGATGTTCCTCTGCGGCACGTT
GGGGATTGTGATTGGTGGCCCGGTGGCGCTGCTGCTGGTGTCGGCCATTGACCCTTCGCTGACCAACGATATGGGGCCGG
ACTCTGTGTGGCGTGGTATGACGACGCTTGCCGGCAGTTGGATTGGTGGCGGTGCCAACCAGGCGGCCATGAAAGAAATC
TATGAAGTGGGCGGCAGTGTGTTTTCGGTCATGATCACCGTCGATGTGATTGTGGCCAACGTGTGGATGGCCGTGCTGCT
GTTTATGGCATCCCGCGCCAAAGAAATCGATGCCAAAACCGGCGCCGATACCAGTGCCATCGAAGCGCTTAAAGAGAAGG
TTGAAAAGTACAAGGCCGAAAATGAGCGCAATCCCAGCCTGACCGATTTAATGCTTATTCTGGCGGTGGGCTTTGGTGTC
ACAGGTTTTGCCCATATTGCGGCGGATTTCCTGGCCCCCTTCTTTTCCGAGCACTTCCCCTGGACCAAACAGTACAGCCT
GACTTCCGGCTTTTTCTGGCTGGTGGTGTTGGTGACGACCGCCGGTTTGGCGCTGTCGTTCACACCACTGCGTCATCTGG
AAGCCGCAGGAGCCTCCAAGGTGGCGTCGTCCTTCCTCTATGTGCTGGTGGCTACCATTGGCCTTCATATGGATGTGAGT
GAAATCCTCAAGACCCCGATTTACTTCCTGCTGGGCATCACCTGGATGTTGGTGCACGCGGGCTTTATGCTGCTGGTGGC
CAAGCTTATCAAGGCGCCGTTGTTTTACATGGCGGTGGGCAGCCAGGCCAACGTCGGCGGCGCTGCATCTGCTCCTGTGG
TTGCTGCGGCCTTCCACCCCTCTTTGGCACCTGTAGGTGTGCTTTTGGCGGTGTTCGGTTATGCTTTGGGCACTTACATG
GCGTGGCTCTGTGGCCAGCTCTTGCAGCTGGTGGGCTGA

Upstream 100 bases:

>100_bases
GGTGAAAATGCAGCTGCGTGAGCTGGGCGAACATCACGAAATTCTGCATTAACAAAGATATACCTTACAAAATTAATAAC
ACTTTCAGGGGGAAGAAAGG

Downstream 100 bases:

>100_bases
TTTTTCCGCCGGCGAGCGCGCCGGTTTATTCTTTGAGAGGCTTAGATGAGTATCAAGACAATCCAACTTGGCGACATCGC
CATTGCCAATGACAAGCCCT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 412; Mature: 411

Protein sequence:

>412_residues
MTTAPLVTNDATVLGFLAIILGFVFYTHSHPSWQKFYKFVPALLLCYFLPSLLNTFGIVDGHSSQLYFVATRYLLPACLV
LLILSVDLKAIMGLGPKAVVMFLCGTLGIVIGGPVALLLVSAIDPSLTNDMGPDSVWRGMTTLAGSWIGGGANQAAMKEI
YEVGGSVFSVMITVDVIVANVWMAVLLFMASRAKEIDAKTGADTSAIEALKEKVEKYKAENERNPSLTDLMLILAVGFGV
TGFAHIAADFLAPFFSEHFPWTKQYSLTSGFFWLVVLVTTAGLALSFTPLRHLEAAGASKVASSFLYVLVATIGLHMDVS
EILKTPIYFLLGITWMLVHAGFMLLVAKLIKAPLFYMAVGSQANVGGAASAPVVAAAFHPSLAPVGVLLAVFGYALGTYM
AWLCGQLLQLVG

Sequences:

>Translated_412_residues
MTTAPLVTNDATVLGFLAIILGFVFYTHSHPSWQKFYKFVPALLLCYFLPSLLNTFGIVDGHSSQLYFVATRYLLPACLV
LLILSVDLKAIMGLGPKAVVMFLCGTLGIVIGGPVALLLVSAIDPSLTNDMGPDSVWRGMTTLAGSWIGGGANQAAMKEI
YEVGGSVFSVMITVDVIVANVWMAVLLFMASRAKEIDAKTGADTSAIEALKEKVEKYKAENERNPSLTDLMLILAVGFGV
TGFAHIAADFLAPFFSEHFPWTKQYSLTSGFFWLVVLVTTAGLALSFTPLRHLEAAGASKVASSFLYVLVATIGLHMDVS
EILKTPIYFLLGITWMLVHAGFMLLVAKLIKAPLFYMAVGSQANVGGAASAPVVAAAFHPSLAPVGVLLAVFGYALGTYM
AWLCGQLLQLVG
>Mature_411_residues
TTAPLVTNDATVLGFLAIILGFVFYTHSHPSWQKFYKFVPALLLCYFLPSLLNTFGIVDGHSSQLYFVATRYLLPACLVL
LILSVDLKAIMGLGPKAVVMFLCGTLGIVIGGPVALLLVSAIDPSLTNDMGPDSVWRGMTTLAGSWIGGGANQAAMKEIY
EVGGSVFSVMITVDVIVANVWMAVLLFMASRAKEIDAKTGADTSAIEALKEKVEKYKAENERNPSLTDLMLILAVGFGVT
GFAHIAADFLAPFFSEHFPWTKQYSLTSGFFWLVVLVTTAGLALSFTPLRHLEAAGASKVASSFLYVLVATIGLHMDVSE
ILKTPIYFLLGITWMLVHAGFMLLVAKLIKAPLFYMAVGSQANVGGAASAPVVAAAFHPSLAPVGVLLAVFGYALGTYMA
WLCGQLLQLVG

Specific function: Unknown

COG id: COG5505

COG function: function code S; Predicted integral membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43991; Mature: 43859

Theoretical pI: Translated: 7.01; Mature: 7.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure 
TTAPLVTNDATVLGFLAIILGFVFYTHSHPSWQKFYKFVPALLLCYFLPSLLNTFGIVD
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC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CCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA