| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775694
Identifier: 119775694
GI number: 119775694
Start: 3068495
End: 3069733
Strand: Reverse
Name: 119775694
Synonym: Sama_2562
Alternate gene names: NA
Gene position: 3069733-3068495 (Counterclockwise)
Preceding gene: 119775695
Following gene: 119775693
Centisome position: 71.29
GC content: 56.58
Gene sequence:
>1239_bases ATGACAACGGCGCCATTGGTTACCAACGACGCAACCGTACTGGGTTTTTTGGCCATTATTCTGGGATTTGTGTTTTACAC CCACAGCCACCCCAGCTGGCAAAAATTCTATAAATTCGTCCCGGCGTTGCTGCTGTGCTACTTCCTGCCTTCGCTGCTCA ATACGTTCGGCATAGTCGATGGCCACAGCTCTCAGCTGTACTTTGTCGCCACCCGCTATTTGCTGCCCGCCTGTTTGGTG TTGCTGATTCTGTCGGTGGACCTCAAGGCCATCATGGGGCTGGGGCCCAAGGCTGTGGTGATGTTCCTCTGCGGCACGTT GGGGATTGTGATTGGTGGCCCGGTGGCGCTGCTGCTGGTGTCGGCCATTGACCCTTCGCTGACCAACGATATGGGGCCGG ACTCTGTGTGGCGTGGTATGACGACGCTTGCCGGCAGTTGGATTGGTGGCGGTGCCAACCAGGCGGCCATGAAAGAAATC TATGAAGTGGGCGGCAGTGTGTTTTCGGTCATGATCACCGTCGATGTGATTGTGGCCAACGTGTGGATGGCCGTGCTGCT GTTTATGGCATCCCGCGCCAAAGAAATCGATGCCAAAACCGGCGCCGATACCAGTGCCATCGAAGCGCTTAAAGAGAAGG TTGAAAAGTACAAGGCCGAAAATGAGCGCAATCCCAGCCTGACCGATTTAATGCTTATTCTGGCGGTGGGCTTTGGTGTC ACAGGTTTTGCCCATATTGCGGCGGATTTCCTGGCCCCCTTCTTTTCCGAGCACTTCCCCTGGACCAAACAGTACAGCCT GACTTCCGGCTTTTTCTGGCTGGTGGTGTTGGTGACGACCGCCGGTTTGGCGCTGTCGTTCACACCACTGCGTCATCTGG AAGCCGCAGGAGCCTCCAAGGTGGCGTCGTCCTTCCTCTATGTGCTGGTGGCTACCATTGGCCTTCATATGGATGTGAGT GAAATCCTCAAGACCCCGATTTACTTCCTGCTGGGCATCACCTGGATGTTGGTGCACGCGGGCTTTATGCTGCTGGTGGC CAAGCTTATCAAGGCGCCGTTGTTTTACATGGCGGTGGGCAGCCAGGCCAACGTCGGCGGCGCTGCATCTGCTCCTGTGG TTGCTGCGGCCTTCCACCCCTCTTTGGCACCTGTAGGTGTGCTTTTGGCGGTGTTCGGTTATGCTTTGGGCACTTACATG GCGTGGCTCTGTGGCCAGCTCTTGCAGCTGGTGGGCTGA
Upstream 100 bases:
>100_bases GGTGAAAATGCAGCTGCGTGAGCTGGGCGAACATCACGAAATTCTGCATTAACAAAGATATACCTTACAAAATTAATAAC ACTTTCAGGGGGAAGAAAGG
Downstream 100 bases:
>100_bases TTTTTCCGCCGGCGAGCGCGCCGGTTTATTCTTTGAGAGGCTTAGATGAGTATCAAGACAATCCAACTTGGCGACATCGC CATTGCCAATGACAAGCCCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 412; Mature: 411
Protein sequence:
>412_residues MTTAPLVTNDATVLGFLAIILGFVFYTHSHPSWQKFYKFVPALLLCYFLPSLLNTFGIVDGHSSQLYFVATRYLLPACLV LLILSVDLKAIMGLGPKAVVMFLCGTLGIVIGGPVALLLVSAIDPSLTNDMGPDSVWRGMTTLAGSWIGGGANQAAMKEI YEVGGSVFSVMITVDVIVANVWMAVLLFMASRAKEIDAKTGADTSAIEALKEKVEKYKAENERNPSLTDLMLILAVGFGV TGFAHIAADFLAPFFSEHFPWTKQYSLTSGFFWLVVLVTTAGLALSFTPLRHLEAAGASKVASSFLYVLVATIGLHMDVS EILKTPIYFLLGITWMLVHAGFMLLVAKLIKAPLFYMAVGSQANVGGAASAPVVAAAFHPSLAPVGVLLAVFGYALGTYM AWLCGQLLQLVG
Sequences:
>Translated_412_residues MTTAPLVTNDATVLGFLAIILGFVFYTHSHPSWQKFYKFVPALLLCYFLPSLLNTFGIVDGHSSQLYFVATRYLLPACLV LLILSVDLKAIMGLGPKAVVMFLCGTLGIVIGGPVALLLVSAIDPSLTNDMGPDSVWRGMTTLAGSWIGGGANQAAMKEI YEVGGSVFSVMITVDVIVANVWMAVLLFMASRAKEIDAKTGADTSAIEALKEKVEKYKAENERNPSLTDLMLILAVGFGV TGFAHIAADFLAPFFSEHFPWTKQYSLTSGFFWLVVLVTTAGLALSFTPLRHLEAAGASKVASSFLYVLVATIGLHMDVS EILKTPIYFLLGITWMLVHAGFMLLVAKLIKAPLFYMAVGSQANVGGAASAPVVAAAFHPSLAPVGVLLAVFGYALGTYM AWLCGQLLQLVG >Mature_411_residues TTAPLVTNDATVLGFLAIILGFVFYTHSHPSWQKFYKFVPALLLCYFLPSLLNTFGIVDGHSSQLYFVATRYLLPACLVL LILSVDLKAIMGLGPKAVVMFLCGTLGIVIGGPVALLLVSAIDPSLTNDMGPDSVWRGMTTLAGSWIGGGANQAAMKEIY EVGGSVFSVMITVDVIVANVWMAVLLFMASRAKEIDAKTGADTSAIEALKEKVEKYKAENERNPSLTDLMLILAVGFGVT GFAHIAADFLAPFFSEHFPWTKQYSLTSGFFWLVVLVTTAGLALSFTPLRHLEAAGASKVASSFLYVLVATIGLHMDVSE ILKTPIYFLLGITWMLVHAGFMLLVAKLIKAPLFYMAVGSQANVGGAASAPVVAAAFHPSLAPVGVLLAVFGYALGTYMA WLCGQLLQLVG
Specific function: Unknown
COG id: COG5505
COG function: function code S; Predicted integral membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43991; Mature: 43859
Theoretical pI: Translated: 7.01; Mature: 7.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTAPLVTNDATVLGFLAIILGFVFYTHSHPSWQKFYKFVPALLLCYFLPSLLNTFGIVD CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC GHSSQLYFVATRYLLPACLVLLILSVDLKAIMGLGPKAVVMFLCGTLGIVIGGPVALLLV CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHH SAIDPSLTNDMGPDSVWRGMTTLAGSWIGGGANQAAMKEIYEVGGSVFSVMITVDVIVAN HHHCCHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH VWMAVLLFMASRAKEIDAKTGADTSAIEALKEKVEKYKAENERNPSLTDLMLILAVGFGV HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCH TGFAHIAADFLAPFFSEHFPWTKQYSLTSGFFWLVVLVTTAGLALSFTPLRHLEAAGASK HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCHHHCCCHHHHHHHCCHHH VASSFLYVLVATIGLHMDVSEILKTPIYFLLGITWMLVHAGFMLLVAKLIKAPLFYMAVG HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHEEC SQANVGGAASAPVVAAAFHPSLAPVGVLLAVFGYALGTYMAWLCGQLLQLVG CCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC >Mature Secondary Structure TTAPLVTNDATVLGFLAIILGFVFYTHSHPSWQKFYKFVPALLLCYFLPSLLNTFGIVD CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC GHSSQLYFVATRYLLPACLVLLILSVDLKAIMGLGPKAVVMFLCGTLGIVIGGPVALLLV CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHH SAIDPSLTNDMGPDSVWRGMTTLAGSWIGGGANQAAMKEIYEVGGSVFSVMITVDVIVAN HHHCCHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH VWMAVLLFMASRAKEIDAKTGADTSAIEALKEKVEKYKAENERNPSLTDLMLILAVGFGV HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCH TGFAHIAADFLAPFFSEHFPWTKQYSLTSGFFWLVVLVTTAGLALSFTPLRHLEAAGASK HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCHHHCCCHHHHHHHCCHHH VASSFLYVLVATIGLHMDVSEILKTPIYFLLGITWMLVHAGFMLLVAKLIKAPLFYMAVG HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHEEC SQANVGGAASAPVVAAAFHPSLAPVGVLLAVFGYALGTYMAWLCGQLLQLVG CCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA