| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is 119775692
Identifier: 119775692
GI number: 119775692
Start: 3066638
End: 3067513
Strand: Reverse
Name: 119775692
Synonym: Sama_2560
Alternate gene names: NA
Gene position: 3067513-3066638 (Counterclockwise)
Preceding gene: 119775693
Following gene: 119775689
Centisome position: 71.24
GC content: 56.62
Gene sequence:
>876_bases ATGTGGGTGATGTTCACCCTGATGGCGGCCTTTATGCAGGCCTGGCGCAATGCCTTTCAAAGTGAGCTCAGTCGCGATGT TGGTGTGCTTGGCGTCACCCTGGCGCGCTTTCTCTATGCAGGTCCGTTGGCGGCTTTGTATCTGGCCGGGCTCTACCTGT GGCAGGATGCGTCCATTCCCAACTTCGGCGCGGATGCCCTTGGGTTTATTCTTGGGGCGGCGCTGATGCAAATTCTGGCT ACGGCCCTCATGGTGAAGCTGTTTCAGCTTAAAAACTTTGCCATTGGCGCAGGGCTTGCCAAAAGCGAGGCGCTGGTGGC CGCTATTCTTGGGGTGGCCTTCTTTGGTACCAGCCTGTCACTCTTTGGCTGGCTTGGGGTACTTGTGGGCACTGTGGCGG TGTTTATGCTCTCAAGCAAGGGCGGCCTTCGCACACTCTCGCCCAAGACACTGTTACTGGGGCTTGCCAGCGGCAGTGCC TTTGCGCTCACGTCGCTATGGGTTCGTGAAGCCAGCCTGTGTCTCGATGTGCCTTTTCCCCACCGCGCCGCCTGGGTGCT CTTGCTGGTTATCCTTATTCAAACGGTGATTTTGCTGCTGTGGCTGCTGGTGCGAAAACCCGATGAGCTAAAGGCCATGA TGGCAAGAAACCGACTGACGCTGGCCATCAGCGTCAGCAGTTGCCTTGGCTCCATTGGCTGGTTCTCTGCCATGTCGCTC ACCGCCGTGCCCTACGTGAAAACCCTGGGCCAAGTGGAAATTTTCTTTATGATGCTGGTGTCGAGCCTGTATCTGAAGCA AAAGGTGCAGGTAAAGGACATGGCGGCGCTGGTTCTTATCGCATTAGCCGCCATCATGGTGATGTGGCCTCAATAA
Upstream 100 bases:
>100_bases TACCAGCAAGTAAACCACAGCATCAATCGGCTGTGATATGCTCAAACGCCCGGCTTTGCCGGGCGTTTTTTTTGGTCAAT AGAGAAAAGGGAGAGTCTGT
Downstream 100 bases:
>100_bases GAGGGTGCGTGGTTTAAAAGCGTCGCTCCAGGGTGTGAATGGCGTCGACCAGAGCTCTGTTGGTGGGTGTAGCAATGCTG TGGCGATGGCCAAGGCTGAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 291; Mature: 291
Protein sequence:
>291_residues MWVMFTLMAAFMQAWRNAFQSELSRDVGVLGVTLARFLYAGPLAALYLAGLYLWQDASIPNFGADALGFILGAALMQILA TALMVKLFQLKNFAIGAGLAKSEALVAAILGVAFFGTSLSLFGWLGVLVGTVAVFMLSSKGGLRTLSPKTLLLGLASGSA FALTSLWVREASLCLDVPFPHRAAWVLLLVILIQTVILLLWLLVRKPDELKAMMARNRLTLAISVSSCLGSIGWFSAMSL TAVPYVKTLGQVEIFFMMLVSSLYLKQKVQVKDMAALVLIALAAIMVMWPQ
Sequences:
>Translated_291_residues MWVMFTLMAAFMQAWRNAFQSELSRDVGVLGVTLARFLYAGPLAALYLAGLYLWQDASIPNFGADALGFILGAALMQILA TALMVKLFQLKNFAIGAGLAKSEALVAAILGVAFFGTSLSLFGWLGVLVGTVAVFMLSSKGGLRTLSPKTLLLGLASGSA FALTSLWVREASLCLDVPFPHRAAWVLLLVILIQTVILLLWLLVRKPDELKAMMARNRLTLAISVSSCLGSIGWFSAMSL TAVPYVKTLGQVEIFFMMLVSSLYLKQKVQVKDMAALVLIALAAIMVMWPQ >Mature_291_residues MWVMFTLMAAFMQAWRNAFQSELSRDVGVLGVTLARFLYAGPLAALYLAGLYLWQDASIPNFGADALGFILGAALMQILA TALMVKLFQLKNFAIGAGLAKSEALVAAILGVAFFGTSLSLFGWLGVLVGTVAVFMLSSKGGLRTLSPKTLLLGLASGSA FALTSLWVREASLCLDVPFPHRAAWVLLLVILIQTVILLLWLLVRKPDELKAMMARNRLTLAISVSSCLGSIGWFSAMSL TAVPYVKTLGQVEIFFMMLVSSLYLKQKVQVKDMAALVLIALAAIMVMWPQ
Specific function: Unknown
COG id: COG0697
COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31459; Mature: 31459
Theoretical pI: Translated: 10.34; Mature: 10.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 5.2 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 5.2 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MWVMFTLMAAFMQAWRNAFQSELSRDVGVLGVTLARFLYAGPLAALYLAGLYLWQDASIP CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC NFGADALGFILGAALMQILATALMVKLFQLKNFAIGAGLAKSEALVAAILGVAFFGTSLS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH LFGWLGVLVGTVAVFMLSSKGGLRTLSPKTLLLGLASGSAFALTSLWVREASLCLDVPFP HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHEEEECCCCHHHHHHHHHHHHHHEEECCCC HRAAWVLLLVILIQTVILLLWLLVRKPDELKAMMARNRLTLAISVSSCLGSIGWFSAMSL CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHH TAVPYVKTLGQVEIFFMMLVSSLYLKQKVQVKDMAALVLIALAAIMVMWPQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MWVMFTLMAAFMQAWRNAFQSELSRDVGVLGVTLARFLYAGPLAALYLAGLYLWQDASIP CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC NFGADALGFILGAALMQILATALMVKLFQLKNFAIGAGLAKSEALVAAILGVAFFGTSLS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH LFGWLGVLVGTVAVFMLSSKGGLRTLSPKTLLLGLASGSAFALTSLWVREASLCLDVPFP HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHEEEECCCCHHHHHHHHHHHHHHEEECCCC HRAAWVLLLVILIQTVILLLWLLVRKPDELKAMMARNRLTLAISVSSCLGSIGWFSAMSL CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHH TAVPYVKTLGQVEIFFMMLVSSLYLKQKVQVKDMAALVLIALAAIMVMWPQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA