| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is yajQ [C]
Identifier: 119775689
GI number: 119775689
Start: 3064679
End: 3065164
Strand: Reverse
Name: yajQ [C]
Synonym: Sama_2557
Alternate gene names: 119775689
Gene position: 3065164-3064679 (Counterclockwise)
Preceding gene: 119775692
Following gene: 119775684
Centisome position: 71.18
GC content: 50.0
Gene sequence:
>486_bases ATGCCGTCATTTGATATTGTTTCGGAAGTGGATGCCGTTGAGCTTAAAAACGCTGTGGAAAACACCCGCCGTGAAATGGA TGGCCGTTTTGATTTTCGTGGTGTTGAGTACAGTGTGGATTTCAAGGATATGGTGGTCATCCTGCGTTCAGAGTCGGATT TCCAGTGTCGTCAGATGGTGGATATTCTCAGAGGCCAGCTTGCCAAACGCAACGTGGATGCCAAGGCCATGGAAGTGGAC GACAAGATAGTCCACACCGGCAAAACCTTTGCACAAAACGTGAAGTTCAAGCAGGGCATAGAGCAGGATGTGGCCAAGAA GCTTATCAAGCTGATTAAAGACAGCAAGGTGAAGGTGCAGGCGCAAATTCAGGGTGATTCGATTCGGGTCACAGGCAAGA AGCGCGATGACTTGCAGGCCATTATGCAACTGGCCCGCACATCAGAGCTGGGCCAGCCTTTTCAGTTCAATAACTTCCGC GACTGA
Upstream 100 bases:
>100_bases TTGGGGCTTCAACTGTGCTGGCCGGATCGTTACACTATGCTCTATTCGGATTGAGGCCCGTTTTGTCAGAGGCCTGTTTT GCTTTTCAAGGGGTTAAAAA
Downstream 100 bases:
>100_bases TTTAAGCCTTCTCTCAGTCTGTCACCTGCTCGCTCCTTGCCTCGGCGTGGGCAGGGGGCGACAGCTTTCCTACCAGCCAT ACCAGCAGCAATACCGGTAG
Product: putative nucleotide-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 161; Mature: 160
Protein sequence:
>161_residues MPSFDIVSEVDAVELKNAVENTRREMDGRFDFRGVEYSVDFKDMVVILRSESDFQCRQMVDILRGQLAKRNVDAKAMEVD DKIVHTGKTFAQNVKFKQGIEQDVAKKLIKLIKDSKVKVQAQIQGDSIRVTGKKRDDLQAIMQLARTSELGQPFQFNNFR D
Sequences:
>Translated_161_residues MPSFDIVSEVDAVELKNAVENTRREMDGRFDFRGVEYSVDFKDMVVILRSESDFQCRQMVDILRGQLAKRNVDAKAMEVD DKIVHTGKTFAQNVKFKQGIEQDVAKKLIKLIKDSKVKVQAQIQGDSIRVTGKKRDDLQAIMQLARTSELGQPFQFNNFR D >Mature_160_residues PSFDIVSEVDAVELKNAVENTRREMDGRFDFRGVEYSVDFKDMVVILRSESDFQCRQMVDILRGQLAKRNVDAKAMEVDD KIVHTGKTFAQNVKFKQGIEQDVAKKLIKLIKDSKVKVQAQIQGDSIRVTGKKRDDLQAIMQLARTSELGQPFQFNNFRD
Specific function: Unknown
COG id: COG1666
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0234 family
Homologues:
Organism=Escherichia coli, GI87081737, Length=163, Percent_Identity=58.8957055214724, Blast_Score=195, Evalue=1e-51,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y2557_SHEAM (A1S8Q3)
Other databases:
- EMBL: CP000507 - RefSeq: YP_928429.1 - ProteinModelPortal: A1S8Q3 - SMR: A1S8Q3 - STRING: A1S8Q3 - GeneID: 4604804 - GenomeReviews: CP000507_GR - KEGG: saz:Sama_2557 - NMPDR: fig|326297.7.peg.2397 - eggNOG: COG1666 - HOGENOM: HBG290634 - OMA: LQFTNYR - PhylomeDB: A1S8Q3 - ProtClustDB: PRK05412 - HAMAP: MF_00632 - InterPro: IPR007551
Pfam domain/function: PF04461 DUF520
EC number: NA
Molecular weight: Translated: 18473; Mature: 18342
Theoretical pI: Translated: 9.12; Mature: 9.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSFDIVSEVDAVELKNAVENTRREMDGRFDFRGVEYSVDFKDMVVILRSESDFQCRQMV CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECHHHEEEEEECCCCCHHHHHH DILRGQLAKRNVDAKAMEVDDKIVHTGKTFAQNVKFKQGIEQDVAKKLIKLIKDSKVKVQ HHHHHHHHHCCCCCHHHHCCHHHHHCCHHHHHCCHHHCCHHHHHHHHHHHHHCCCCEEEE AQIQGDSIRVTGKKRDDLQAIMQLARTSELGQPFQFNNFRD EEECCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure PSFDIVSEVDAVELKNAVENTRREMDGRFDFRGVEYSVDFKDMVVILRSESDFQCRQMV CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECHHHEEEEEECCCCCHHHHHH DILRGQLAKRNVDAKAMEVDDKIVHTGKTFAQNVKFKQGIEQDVAKKLIKLIKDSKVKVQ HHHHHHHHHCCCCCHHHHCCHHHHHCCHHHHHCCHHHCCHHHHHHHHHHHHHCCCCEEEE AQIQGDSIRVTGKKRDDLQAIMQLARTSELGQPFQFNNFRD EEECCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA