Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is yajQ [C]

Identifier: 119775689

GI number: 119775689

Start: 3064679

End: 3065164

Strand: Reverse

Name: yajQ [C]

Synonym: Sama_2557

Alternate gene names: 119775689

Gene position: 3065164-3064679 (Counterclockwise)

Preceding gene: 119775692

Following gene: 119775684

Centisome position: 71.18

GC content: 50.0

Gene sequence:

>486_bases
ATGCCGTCATTTGATATTGTTTCGGAAGTGGATGCCGTTGAGCTTAAAAACGCTGTGGAAAACACCCGCCGTGAAATGGA
TGGCCGTTTTGATTTTCGTGGTGTTGAGTACAGTGTGGATTTCAAGGATATGGTGGTCATCCTGCGTTCAGAGTCGGATT
TCCAGTGTCGTCAGATGGTGGATATTCTCAGAGGCCAGCTTGCCAAACGCAACGTGGATGCCAAGGCCATGGAAGTGGAC
GACAAGATAGTCCACACCGGCAAAACCTTTGCACAAAACGTGAAGTTCAAGCAGGGCATAGAGCAGGATGTGGCCAAGAA
GCTTATCAAGCTGATTAAAGACAGCAAGGTGAAGGTGCAGGCGCAAATTCAGGGTGATTCGATTCGGGTCACAGGCAAGA
AGCGCGATGACTTGCAGGCCATTATGCAACTGGCCCGCACATCAGAGCTGGGCCAGCCTTTTCAGTTCAATAACTTCCGC
GACTGA

Upstream 100 bases:

>100_bases
TTGGGGCTTCAACTGTGCTGGCCGGATCGTTACACTATGCTCTATTCGGATTGAGGCCCGTTTTGTCAGAGGCCTGTTTT
GCTTTTCAAGGGGTTAAAAA

Downstream 100 bases:

>100_bases
TTTAAGCCTTCTCTCAGTCTGTCACCTGCTCGCTCCTTGCCTCGGCGTGGGCAGGGGGCGACAGCTTTCCTACCAGCCAT
ACCAGCAGCAATACCGGTAG

Product: putative nucleotide-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 160

Protein sequence:

>161_residues
MPSFDIVSEVDAVELKNAVENTRREMDGRFDFRGVEYSVDFKDMVVILRSESDFQCRQMVDILRGQLAKRNVDAKAMEVD
DKIVHTGKTFAQNVKFKQGIEQDVAKKLIKLIKDSKVKVQAQIQGDSIRVTGKKRDDLQAIMQLARTSELGQPFQFNNFR
D

Sequences:

>Translated_161_residues
MPSFDIVSEVDAVELKNAVENTRREMDGRFDFRGVEYSVDFKDMVVILRSESDFQCRQMVDILRGQLAKRNVDAKAMEVD
DKIVHTGKTFAQNVKFKQGIEQDVAKKLIKLIKDSKVKVQAQIQGDSIRVTGKKRDDLQAIMQLARTSELGQPFQFNNFR
D
>Mature_160_residues
PSFDIVSEVDAVELKNAVENTRREMDGRFDFRGVEYSVDFKDMVVILRSESDFQCRQMVDILRGQLAKRNVDAKAMEVDD
KIVHTGKTFAQNVKFKQGIEQDVAKKLIKLIKDSKVKVQAQIQGDSIRVTGKKRDDLQAIMQLARTSELGQPFQFNNFRD

Specific function: Unknown

COG id: COG1666

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0234 family

Homologues:

Organism=Escherichia coli, GI87081737, Length=163, Percent_Identity=58.8957055214724, Blast_Score=195, Evalue=1e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2557_SHEAM (A1S8Q3)

Other databases:

- EMBL:   CP000507
- RefSeq:   YP_928429.1
- ProteinModelPortal:   A1S8Q3
- SMR:   A1S8Q3
- STRING:   A1S8Q3
- GeneID:   4604804
- GenomeReviews:   CP000507_GR
- KEGG:   saz:Sama_2557
- NMPDR:   fig|326297.7.peg.2397
- eggNOG:   COG1666
- HOGENOM:   HBG290634
- OMA:   LQFTNYR
- PhylomeDB:   A1S8Q3
- ProtClustDB:   PRK05412
- HAMAP:   MF_00632
- InterPro:   IPR007551

Pfam domain/function: PF04461 DUF520

EC number: NA

Molecular weight: Translated: 18473; Mature: 18342

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSFDIVSEVDAVELKNAVENTRREMDGRFDFRGVEYSVDFKDMVVILRSESDFQCRQMV
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECHHHEEEEEECCCCCHHHHHH
DILRGQLAKRNVDAKAMEVDDKIVHTGKTFAQNVKFKQGIEQDVAKKLIKLIKDSKVKVQ
HHHHHHHHHCCCCCHHHHCCHHHHHCCHHHHHCCHHHCCHHHHHHHHHHHHHCCCCEEEE
AQIQGDSIRVTGKKRDDLQAIMQLARTSELGQPFQFNNFRD
EEECCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
PSFDIVSEVDAVELKNAVENTRREMDGRFDFRGVEYSVDFKDMVVILRSESDFQCRQMV
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECHHHEEEEEECCCCCHHHHHH
DILRGQLAKRNVDAKAMEVDDKIVHTGKTFAQNVKFKQGIEQDVAKKLIKLIKDSKVKVQ
HHHHHHHHHCCCCCHHHHCCHHHHHCCHHHHHCCHHHCCHHHHHHHHHHHHHCCCCEEEE
AQIQGDSIRVTGKKRDDLQAIMQLARTSELGQPFQFNNFRD
EEECCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA