| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775683
Identifier: 119775683
GI number: 119775683
Start: 3059646
End: 3060629
Strand: Reverse
Name: 119775683
Synonym: Sama_2551
Alternate gene names: NA
Gene position: 3060629-3059646 (Counterclockwise)
Preceding gene: 119775684
Following gene: 119775682
Centisome position: 71.08
GC content: 56.4
Gene sequence:
>984_bases ATGGCTGCCGGGCGTCCCTGTTTTGGGCATTTCGATGGCCCGGTTGCGTCTTTGGGGCTCGATGACTTTATCCTGATGAA CGACATGGATAAGCCTGCCTCCCGCTTGCAACGCCATTTTGGCTATAAGCAGTTCGAGTTTATTGCCGTTAACACCCCCA ATTACCTGATAGGCATCGCCCTGGCTGATATTCGCTATCTCGGCAGCGGCTTTTGCTACGTCTACGATGTCAGCAAAAAA CGTGTGTATGAGAAGCATTGGATAAGGCCACCGGGCAGCTTCAGCCTTGGCCCGTCGCCTGTGTCGGCATCCAGTTCCAT GGCTGGTGTCAGTATTCACCGCCGGGATGGTCGCTGGTCGGTGGCGCTGGATTTGGTGCTGGACACACTGCCGCTGAAGG CCGAGTTACAACTGGACGCAATGCCGCTGTCGCTGCCCATGGCCCTTTGCAGCCCTACCGGCTACAGCGGCTGGACGTAC ACCCAAAAGCACAACGCCTTGAGTGTCAAAGGCAGCCTTTATATCAATCACGAGCCGCAACCCCTCGGGCGTGCGCTCGC AGGATACGATTTTTCAGCAGGCTACATGCGCCGGGAAACCAGTTGGCGCTGGGCCTCCATTAACGCCCATGTGGGTAACA GCCTGCTGGGGCTCAATATTGCCGCAGGGGTAAATGAAACCGGTAGCAGTGAAAACGTGCTTTGGCTCGATGGCGTGCGT AAACACCTGGGGCCTGTGCATTTCGAATTTGACCGCAGCCAGGCTGAACATGGCCGCTGGCGCTTGTGGTCTGAGCGGGA TGAGCTTGAACTCGAATTTACGCCCCAGGCCTGCCGCTCTGAGCGGCTTAACCTGATACTGCTGAAAAGCAACTTCCGCC AGTATCAGGGACACTTTTCGGGATGGGTACGTGATGTGGAAGGGGGCAAGGTTCACCTCGATAGGGTGCTCGGACTCACC GAAGATCATTTTGCCAAGTGGTAA
Upstream 100 bases:
>100_bases AACCAAAAAAATAATAAATTGTACGATGGAACATTCAACAAGCACACCAGGGATGACCAATTCAGCCACATTCAAAACCT TGGGGATCCAGGATTGCCTG
Downstream 100 bases:
>100_bases GTGCACACTGCACCAGGAATAGAAAAGCAAGAACAACAAGTGGCCCACAAGTGTCAGGACTTTTGGGCACAGACAACAGG GAAGATAATGAACCTCGACA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 327; Mature: 326
Protein sequence:
>327_residues MAAGRPCFGHFDGPVASLGLDDFILMNDMDKPASRLQRHFGYKQFEFIAVNTPNYLIGIALADIRYLGSGFCYVYDVSKK RVYEKHWIRPPGSFSLGPSPVSASSSMAGVSIHRRDGRWSVALDLVLDTLPLKAELQLDAMPLSLPMALCSPTGYSGWTY TQKHNALSVKGSLYINHEPQPLGRALAGYDFSAGYMRRETSWRWASINAHVGNSLLGLNIAAGVNETGSSENVLWLDGVR KHLGPVHFEFDRSQAEHGRWRLWSERDELELEFTPQACRSERLNLILLKSNFRQYQGHFSGWVRDVEGGKVHLDRVLGLT EDHFAKW
Sequences:
>Translated_327_residues MAAGRPCFGHFDGPVASLGLDDFILMNDMDKPASRLQRHFGYKQFEFIAVNTPNYLIGIALADIRYLGSGFCYVYDVSKK RVYEKHWIRPPGSFSLGPSPVSASSSMAGVSIHRRDGRWSVALDLVLDTLPLKAELQLDAMPLSLPMALCSPTGYSGWTY TQKHNALSVKGSLYINHEPQPLGRALAGYDFSAGYMRRETSWRWASINAHVGNSLLGLNIAAGVNETGSSENVLWLDGVR KHLGPVHFEFDRSQAEHGRWRLWSERDELELEFTPQACRSERLNLILLKSNFRQYQGHFSGWVRDVEGGKVHLDRVLGLT EDHFAKW >Mature_326_residues AAGRPCFGHFDGPVASLGLDDFILMNDMDKPASRLQRHFGYKQFEFIAVNTPNYLIGIALADIRYLGSGFCYVYDVSKKR VYEKHWIRPPGSFSLGPSPVSASSSMAGVSIHRRDGRWSVALDLVLDTLPLKAELQLDAMPLSLPMALCSPTGYSGWTYT QKHNALSVKGSLYINHEPQPLGRALAGYDFSAGYMRRETSWRWASINAHVGNSLLGLNIAAGVNETGSSENVLWLDGVRK HLGPVHFEFDRSQAEHGRWRLWSERDELELEFTPQACRSERLNLILLKSNFRQYQGHFSGWVRDVEGGKVHLDRVLGLTE DHFAKW
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36785; Mature: 36654
Theoretical pI: Translated: 8.04; Mature: 8.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAGRPCFGHFDGPVASLGLDDFILMNDMDKPASRLQRHFGYKQFEFIAVNTPNYLIGIA CCCCCCCCCCCCCCCHHCCCCCEEEECCCCCHHHHHHHHCCCCEEEEEEECCCCEEEEEE LADIRYLGSGFCYVYDVSKKRVYEKHWIRPPGSFSLGPSPVSASSSMAGVSIHRRDGRWS HHHHHHHCCCEEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEE VALDLVLDTLPLKAELQLDAMPLSLPMALCSPTGYSGWTYTQKHNALSVKGSLYINHEPQ EEEEEEHHCCCCEEEEEEECCCCCCCHHHHCCCCCCCCEEEECCCEEEEEEEEEECCCCC PLGRALAGYDFSAGYMRRETSWRWASINAHVGNSLLGLNIAAGVNETGSSENVLWLDGVR HHHHHHHCCCCCCCCEECCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCEEECCCHH KHLGPVHFEFDRSQAEHGRWRLWSERDELELEFTPQACRSERLNLILLKSNFRQYQGHFS HHCCCEEEEECCCCCCCCCEEEECCCCCEEEEECCHHHHCCCCEEEEEECCHHHHHCHHH GWVRDVEGGKVHLDRVLGLTEDHFAKW HEEEECCCCEEEEEHHHCCCHHHHCCC >Mature Secondary Structure AAGRPCFGHFDGPVASLGLDDFILMNDMDKPASRLQRHFGYKQFEFIAVNTPNYLIGIA CCCCCCCCCCCCCCHHCCCCCEEEECCCCCHHHHHHHHCCCCEEEEEEECCCCEEEEEE LADIRYLGSGFCYVYDVSKKRVYEKHWIRPPGSFSLGPSPVSASSSMAGVSIHRRDGRWS HHHHHHHCCCEEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEE VALDLVLDTLPLKAELQLDAMPLSLPMALCSPTGYSGWTYTQKHNALSVKGSLYINHEPQ EEEEEEHHCCCCEEEEEEECCCCCCCHHHHCCCCCCCCEEEECCCEEEEEEEEEECCCCC PLGRALAGYDFSAGYMRRETSWRWASINAHVGNSLLGLNIAAGVNETGSSENVLWLDGVR HHHHHHHCCCCCCCCEECCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCEEECCCHH KHLGPVHFEFDRSQAEHGRWRLWSERDELELEFTPQACRSERLNLILLKSNFRQYQGHFS HHCCCEEEEECCCCCCCCCEEEECCCCCEEEEECCHHHHCCCCEEEEEECCHHHHHCHHH GWVRDVEGGKVHLDRVLGLTEDHFAKW HEEEECCCCEEEEEHHHCCCHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA