Click here to switch to the map view.

The map label for this gene is 119775679

Identifier: 119775679

GI number: 119775679

Start: 3056010

End: 3056630

Strand: Reverse

Name: 119775679

Synonym: Sama_2547

Alternate gene names: NA

Gene position: 3056630-3056010 (Counterclockwise)

Preceding gene: 119775681

Following gene: 119775678

Centisome position: 70.98

GC content: 56.84

Gene sequence:

>621_bases
GTGACCAATCAGCTTGAACTCACATTGGCGCGTGCCACAGGGGCAAAGTCAGAGCCGCCTGTCAGCCATGTACCGGCCTT
TCTGAGCCCCCGGCAACAGGCGCTGTTGATGACCGAGGCCGCTGATTACCCCTTCGAGTCGCCAATGATTAAAGTCTATG
GCAAGTGGCACCCCATACCCCGGCAGCAGGTGTGGTTTGCCGATGAAGGTTGCAGCTACCGATACTCTTCTTTACTCATC
TCTCCAACGCCCTGGCCACATTATTTATTGCGGCTTAAGCAGGCGCTGGAAGCACATTGTGGCGCCGGTTTTAATGGTTG
CCTCGTTAATCATTATCGCGGCGGCGAAGATACCATGGGATTTCATGCAGACGATGAGCCTGAGCTGGTGGAGGAGTCTC
TTATCGCCATCGTCAGCCTGGGCGCCTCACGCCCCTTGGTGATGCGCCGCCGCGAAGATGGTCTTCGCTGCCGGGTGCTG
TTACAAAGTGGCGATCTGCTGCTGATGCATCCCCCAATGCAGTCTACCTGGGAGCACGCCATCCCCCGCAGCCAAAAGTC
GCTGCCTGCGCGGATAAGCTTTACCTTCAGAAACCTCAAGCCCTATTTTCACGGTCGCTGA

Upstream 100 bases:

>100_bases
GGTCGTCATATGTCAGAGTATCTCATCAGTGGGGGCGCGATTATCGCAAATTGTCGTGCCGCTTGCGACTCTTCCTGTTA
CCTCAAGCATAGGAGCAGAT

Downstream 100 bases:

>100_bases
TTGTCATGGCTTACCCTGAACTGTGCACTTAGCCACAGACCCGGGTGTCTGCCCCAAGTAGAGTGAGACATCACCCAGCA
GTGTTTAGGGAGTCGAGTCC

Product: 2OG-Fe(II) oxygenase

Products: NA

Alternate protein names: Alkylated DNA Repair Protein; DNA-N1-Methyladenine Dioxygenase; DNA Repair System Specific For Alkylated DNA; 2OG-Fe(II) Oxygenase Superfamily Protein; 2OG-Fe(II) Oxygenase Family Oxidoreductase; Oxidoreductase 2OG-Fe(II) Oxygenase Family; Alkylated DNA Repair Protein-Like Protein; Oxidoreductase 2OG-Fe(II) Oxygenase Family Protein; Alkylated DNA Repair Protein AlkB; CRISPR-Associated Family Protein; DNA Repair System Specific For Alkylated DNA Protein; 2OG-Fe(II) Oxygenase Family Protein; DNA Repair System Protein

Number of amino acids: Translated: 206; Mature: 205

Protein sequence:

>206_residues
MTNQLELTLARATGAKSEPPVSHVPAFLSPRQQALLMTEAADYPFESPMIKVYGKWHPIPRQQVWFADEGCSYRYSSLLI
SPTPWPHYLLRLKQALEAHCGAGFNGCLVNHYRGGEDTMGFHADDEPELVEESLIAIVSLGASRPLVMRRREDGLRCRVL
LQSGDLLLMHPPMQSTWEHAIPRSQKSLPARISFTFRNLKPYFHGR

Sequences:

>Translated_206_residues
MTNQLELTLARATGAKSEPPVSHVPAFLSPRQQALLMTEAADYPFESPMIKVYGKWHPIPRQQVWFADEGCSYRYSSLLI
SPTPWPHYLLRLKQALEAHCGAGFNGCLVNHYRGGEDTMGFHADDEPELVEESLIAIVSLGASRPLVMRRREDGLRCRVL
LQSGDLLLMHPPMQSTWEHAIPRSQKSLPARISFTFRNLKPYFHGR
>Mature_205_residues
TNQLELTLARATGAKSEPPVSHVPAFLSPRQQALLMTEAADYPFESPMIKVYGKWHPIPRQQVWFADEGCSYRYSSLLIS
PTPWPHYLLRLKQALEAHCGAGFNGCLVNHYRGGEDTMGFHADDEPELVEESLIAIVSLGASRPLVMRRREDGLRCRVLL
QSGDLLLMHPPMQSTWEHAIPRSQKSLPARISFTFRNLKPYFHGR

Specific function: Unknown

COG id: COG3145

COG function: function code L; Alkylated DNA repair protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI224451107, Length=158, Percent_Identity=37.9746835443038, Blast_Score=119, Evalue=2e-27,
Organism=Homo sapiens, GI48717226, Length=158, Percent_Identity=37.9746835443038, Blast_Score=119, Evalue=2e-27,
Organism=Homo sapiens, GI224451103, Length=158, Percent_Identity=37.9746835443038, Blast_Score=119, Evalue=2e-27,
Organism=Homo sapiens, GI21040275, Length=152, Percent_Identity=35.5263157894737, Blast_Score=95, Evalue=5e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23352; Mature: 23221

Theoretical pI: Translated: 8.34; Mature: 8.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNQLELTLARATGAKSEPPVSHVPAFLSPRQQALLMTEAADYPFESPMIKVYGKWHPIP
CCCCEEEEEEECCCCCCCCCHHHCCHHCCCCHHEEEEECCCCCCCCCCEEEEEECCCCCC
RQQVWFADEGCSYRYSSLLISPTPWPHYLLRLKQALEAHCGAGFNGCLVNHYRGGEDTMG
CCEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCC
FHADDEPELVEESLIAIVSLGASRPLVMRRREDGLRCRVLLQSGDLLLMHPPMQSTWEHA
CCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEEECCCEEEECCCCHHHHHHH
IPRSQKSLPARISFTFRNLKPYFHGR
CCCCCCCCCEEEEEEEECCCCCCCCC
>Mature Secondary Structure 
TNQLELTLARATGAKSEPPVSHVPAFLSPRQQALLMTEAADYPFESPMIKVYGKWHPIP
CCCEEEEEEECCCCCCCCCHHHCCHHCCCCHHEEEEECCCCCCCCCCEEEEEECCCCCC
RQQVWFADEGCSYRYSSLLISPTPWPHYLLRLKQALEAHCGAGFNGCLVNHYRGGEDTMG
CCEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCC
FHADDEPELVEESLIAIVSLGASRPLVMRRREDGLRCRVLLQSGDLLLMHPPMQSTWEHA
CCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEEECCCEEEECCCCHHHHHHH
IPRSQKSLPARISFTFRNLKPYFHGR
CCCCCCCCCEEEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA