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The map label for this gene is rhaS [H]

Identifier: 119775640

GI number: 119775640

Start: 3012955

End: 3013965

Strand: Reverse

Name: rhaS [H]

Synonym: Sama_2508

Alternate gene names: 119775640

Gene position: 3013965-3012955 (Counterclockwise)

Preceding gene: 119775642

Following gene: 119775639

Centisome position: 69.99

GC content: 56.78

Gene sequence:

>1011_bases
ATGCCAAAAATATTGCTGCTTGCCATGCCCGGCTGTATGGCGTCGTCAGTGCAGGTTGCACTGGATATGTTTTATGTGGC
CAATCGCTGCCTGGAAAAACGCGATGGCAGTGCGCTTATCGATAATGCGCATTTCACTGCTCAGGTAGTTTCTCCCGATG
GCAAGGCGGTGGAGTCAGCATCCGGTCAATTAATACAGCCGGAGCTGGCCATGGCTGACGCGAAGATCGCAGATATTGTC
CTGGTCACCAGTCTGTTTGCGGCGTCCGCTTCGCACTCCGAGGTCGACAATTACCTTACGGCGCAGCAAGAGGCCGCTGC
CTGGCTGAAAGGCATGTCAGATGCGGGTGCGCTGGTGGCCAGTGCCTGCAGCGGTACCTTTCTTCTCGCTGAGGCCGGGA
TAATGGATGGCCGCGAGGCGACCACCCATTGGTTACTGGAGGCTGTATTCCGCCGTCGTTACCCCCGGGTTCGCTATCAC
GGCGAGCGGATGCTGTTGGAGTATGGCAATGTGATTTGCGGCGGTGCGTTTTTTGCTTTTACCGACATACTGCTCAAGTT
GCTCGAGCGTTATGGCGGACGGGAGCTGGCGTTGATGTGTGCCCGCTTGATGCTGCTGGAACCCAATCGCGAGCTGCAAC
AACCGTTTATGCAATCAAGTGGCAGATCCCATGAAGATGAGGCAATTCGCAAAGCCGAGCAGTGGCTTAAACACCATTTT
GATCAGCAAATCAGTGTCGATTCGGCCGCCGACGCCATTTCCATGGGCGCCCGTAATTTCAAGCGGCGTTTTAAAGCGGC
CACAGGGGTTACCCCAATCGAATACCTGCAGCGGCTGCGTGTCGATGCCGCCAAACGCCAGCTGGAACACTCCAGTCGTG
CCAGTACAGAGGTGATCTGGTCGGTGGGTTACGAGGATGCCAGTTCCTTCAGGCGATTGTTCAAGCGCCAAACCGGCGTA
ACCATGGAGCAATACCGGCGCCGCTTTGGCCCTGCCAGTGCCAGCGGGTGA

Upstream 100 bases:

>100_bases
TAATCATACAAACTCCTTGTTGATGGTTTCGTCCAGTGTAGAGCTTGCGCTGGCAGCGATTAATGGTCATATTTGCCCAA
ATAAATGCGAGAAGTGACAA

Downstream 100 bases:

>100_bases
ACCGGTGCGGTTGGCTTGGCGAAGAGCCGGGGGTAAAATGAGGAACAAACAGCGTTCTTCTCGGCTTTAAAGGATTAATA
AACATGAAAAAACTACTTAC

Product: transcriptional regulator

Products: NA

Alternate protein names: L-rhamnose operon regulatory protein rhaS [H]

Number of amino acids: Translated: 336; Mature: 335

Protein sequence:

>336_residues
MPKILLLAMPGCMASSVQVALDMFYVANRCLEKRDGSALIDNAHFTAQVVSPDGKAVESASGQLIQPELAMADAKIADIV
LVTSLFAASASHSEVDNYLTAQQEAAAWLKGMSDAGALVASACSGTFLLAEAGIMDGREATTHWLLEAVFRRRYPRVRYH
GERMLLEYGNVICGGAFFAFTDILLKLLERYGGRELALMCARLMLLEPNRELQQPFMQSSGRSHEDEAIRKAEQWLKHHF
DQQISVDSAADAISMGARNFKRRFKAATGVTPIEYLQRLRVDAAKRQLEHSSRASTEVIWSVGYEDASSFRRLFKRQTGV
TMEQYRRRFGPASASG

Sequences:

>Translated_336_residues
MPKILLLAMPGCMASSVQVALDMFYVANRCLEKRDGSALIDNAHFTAQVVSPDGKAVESASGQLIQPELAMADAKIADIV
LVTSLFAASASHSEVDNYLTAQQEAAAWLKGMSDAGALVASACSGTFLLAEAGIMDGREATTHWLLEAVFRRRYPRVRYH
GERMLLEYGNVICGGAFFAFTDILLKLLERYGGRELALMCARLMLLEPNRELQQPFMQSSGRSHEDEAIRKAEQWLKHHF
DQQISVDSAADAISMGARNFKRRFKAATGVTPIEYLQRLRVDAAKRQLEHSSRASTEVIWSVGYEDASSFRRLFKRQTGV
TMEQYRRRFGPASASG
>Mature_335_residues
PKILLLAMPGCMASSVQVALDMFYVANRCLEKRDGSALIDNAHFTAQVVSPDGKAVESASGQLIQPELAMADAKIADIVL
VTSLFAASASHSEVDNYLTAQQEAAAWLKGMSDAGALVASACSGTFLLAEAGIMDGREATTHWLLEAVFRRRYPRVRYHG
ERMLLEYGNVICGGAFFAFTDILLKLLERYGGRELALMCARLMLLEPNRELQQPFMQSSGRSHEDEAIRKAEQWLKHHFD
QQISVDSAADAISMGARNFKRRFKAATGVTPIEYLQRLRVDAAKRQLEHSSRASTEVIWSVGYEDASSFRRLFKRQTGVT
MEQYRRRFGPASASG

Specific function: Activates expression of the rhaBAD and rhaT operons [H]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=83, Percent_Identity=37.3493975903614, Blast_Score=71, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 37251; Mature: 37120

Theoretical pI: Translated: 8.22; Mature: 8.22

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKILLLAMPGCMASSVQVALDMFYVANRCLEKRDGSALIDNAHFTAQVVSPDGKAVESA
CCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEEECCCCCHHHHC
SGQLIQPELAMADAKIADIVLVTSLFAASASHSEVDNYLTAQQEAAAWLKGMSDAGALVA
CCCEECCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
SACSGTFLLAEAGIMDGREATTHWLLEAVFRRRYPRVRYHGERMLLEYGNVICGGAFFAF
HHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHCCCCCCHHHHHH
TDILLKLLERYGGRELALMCARLMLLEPNRELQQPFMQSSGRSHEDEAIRKAEQWLKHHF
HHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
DQQISVDSAADAISMGARNFKRRFKAATGVTPIEYLQRLRVDAAKRQLEHSSRASTEVIW
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHEE
SVGYEDASSFRRLFKRQTGVTMEQYRRRFGPASASG
ECCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCC
>Mature Secondary Structure 
PKILLLAMPGCMASSVQVALDMFYVANRCLEKRDGSALIDNAHFTAQVVSPDGKAVESA
CCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEEECCCCCHHHHC
SGQLIQPELAMADAKIADIVLVTSLFAASASHSEVDNYLTAQQEAAAWLKGMSDAGALVA
CCCEECCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
SACSGTFLLAEAGIMDGREATTHWLLEAVFRRRYPRVRYHGERMLLEYGNVICGGAFFAF
HHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHCCCCCCHHHHHH
TDILLKLLERYGGRELALMCARLMLLEPNRELQQPFMQSSGRSHEDEAIRKAEQWLKHHF
HHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
DQQISVDSAADAISMGARNFKRRFKAATGVTPIEYLQRLRVDAAKRQLEHSSRASTEVIW
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHEE
SVGYEDASSFRRLFKRQTGVTMEQYRRRFGPASASG
ECCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA