| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is 119775617
Identifier: 119775617
GI number: 119775617
Start: 2985297
End: 2987174
Strand: Direct
Name: 119775617
Synonym: Sama_2484
Alternate gene names: NA
Gene position: 2985297-2987174 (Clockwise)
Preceding gene: 119775616
Following gene: 119775623
Centisome position: 69.33
GC content: 51.6
Gene sequence:
>1878_bases ATGCCAAATACGTATAACAAAAAAAATAAAATCTCTCTCATCGCCGCCAGTCTGTTGCTTGCGCTGGGCTCAGCCTCCAG TTTTACCGCACAGGCCGAGACACAGGGCACAGCTCAGCAAGGCACAGCGCAGCAAGTGACCAGCGAATCTGCCAAAGCCA ATGCCCTGTTCGAGACCCAGTTTATGGAAAACGTCATGGCAAGCCCTATCAGTCAAACCCTGATGGGCATCAAGGGCGAA GACTATGGCAAGTGGGATGAAATCAGTGAAGCGGCAGATGCCCGCGAATTGGAGAGAGCCAAACGCCATCTGGCTGAGCT CAGAGCTATCGATGCCAATGCCCTGGATTCTCAAACGGCACTCAGCTTGGCGTTGGCGCTGCAAAGCCTGGAAAATGAGA TTGCCGACTACAAATGGCGACTGCACAACTACCCGGTCAATCAAATGTATGGCGTCCACTCGCTCACAGCCTCCATTCTT ATCAACCAGCACACGGTTGATAACCTGGATGACGCCAAGGCCTATATCAGCCGTCTCAATGCCGTACCCAAGCGTTTCAG TGAGCTTAAAGACGCTCTGGAATTGAGAGCAGCCAAAGGCATCATTGCGCCCAGGTTTGTGTTCCCCCTCGTGATTAACG ACAGCCGTAATATCATCAAAGGCGAGCCCTTTGAAGAAGGTGAAGACAGCACCCTGTGGGCTGACTTCAAACGGAAAGTC GACGCTCTGAATTTGGATGCCACCACCAAGGAGAACCTCTTCAGCGAAGCTAAACTGGCCCTGAACAATGCGGTAAAACC AGCTTACGATGACCTGATTGTTTACCTGAACACTCTGGAACAAAAAGCCGATACCCGAGATGGAGTTTGGAAACTGCCAG ATGGTAACGACTTCTACAACAATGCCCTTAAGCGCACCACCACCACCGATATGGATGCCATCGCCATCCATGAGCTCGGC TTGAAGGAAGTGGCCCGCATTCATAACGAAATGCGCGACATCATGAAAGAAGTGGGCTTCAAAGGCAGCCTGAATGACTT CTTTATCTTTATGCGTAACGACGAGCAGTTTTACTACCCCGATACTGACGATGGGAAAGCTGCCTATATCAACGATGCCA AGGCATTGATTGACAATATGTCTGCCCGCCTTGATGAGGTCTTTGCCATCAAACCCAAAGCTGGCCTGATAGTAAAACCC GTTGAATCATTCCGGGAAAAAAGTGCCGGAAAGGCATTCTACGACCAGCCAGCCCCGGATGGCAGTCGCCCGGGCACATA CTACGCCAACCTGTACAGCATGAAGGCCATGCCCAAGTACCAGATGGAAGCACTGGCATACCATGAAGGATTACCCGGTC ACCATATGCAAATCGCCATCGCCCAGGAGCTGGAAGGCATTCCCAAATTCCGTCGCTTTGGCAGATATACTGCCTATGTT GAGGGTTGGGGCCTATACACAGAGTTCTTCCCTCGGGAAATGGGCCTGTACCAAGACCCTTACTCCAACTTCGGCCGCCT GGCCATGGAGCTCTGGCGCGCCTGCCGTTTGGTGGTGGACACAGGTATTCACGCCAAGAAATGGACCCGCGAACAGGGCA TTGCCTATTACAAAGAAAACACACCCAACGCCGAGTCAGATGCCGTCAAAATGGTTGAACGTCATATCGTGATGCCTTCG CAGGCAACGGCCTACAAGGTGGGTATGAATCGAATTTTAGATCTGCGTGCCTATGCCCAGAAGTCTCTGGGAGACGCGTT TGATATCCGCGAATTCCATACTCTACTGCTGAAAAATGGCCCACTACCATTGGATGTACTCGAGACCAAGGTGCAGGAAT GGGTAAAAGACAGCAAACAGCAAGCCGCCAAGCTGTAA
Upstream 100 bases:
>100_bases TGCCTGCCTCTGGGAACCGGGAAACATTTACTAACACTAAACTCTGAAATTTACCCATGGCTTCTTTAGGATGTTCCCAT TAACACGAGGAAGCCAAGTC
Downstream 100 bases:
>100_bases TGCACTGAAAAATAAAGGAACGAAAAAAAGCCACAACCTCAGGGTTGTGGCTTTTTTTCTTGGGGCTTTCCCCAATTGGC TGCCTATACACCGCACTTGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 625; Mature: 624
Protein sequence:
>625_residues MPNTYNKKNKISLIAASLLLALGSASSFTAQAETQGTAQQGTAQQVTSESAKANALFETQFMENVMASPISQTLMGIKGE DYGKWDEISEAADARELERAKRHLAELRAIDANALDSQTALSLALALQSLENEIADYKWRLHNYPVNQMYGVHSLTASIL INQHTVDNLDDAKAYISRLNAVPKRFSELKDALELRAAKGIIAPRFVFPLVINDSRNIIKGEPFEEGEDSTLWADFKRKV DALNLDATTKENLFSEAKLALNNAVKPAYDDLIVYLNTLEQKADTRDGVWKLPDGNDFYNNALKRTTTTDMDAIAIHELG LKEVARIHNEMRDIMKEVGFKGSLNDFFIFMRNDEQFYYPDTDDGKAAYINDAKALIDNMSARLDEVFAIKPKAGLIVKP VESFREKSAGKAFYDQPAPDGSRPGTYYANLYSMKAMPKYQMEALAYHEGLPGHHMQIAIAQELEGIPKFRRFGRYTAYV EGWGLYTEFFPREMGLYQDPYSNFGRLAMELWRACRLVVDTGIHAKKWTREQGIAYYKENTPNAESDAVKMVERHIVMPS QATAYKVGMNRILDLRAYAQKSLGDAFDIREFHTLLLKNGPLPLDVLETKVQEWVKDSKQQAAKL
Sequences:
>Translated_625_residues MPNTYNKKNKISLIAASLLLALGSASSFTAQAETQGTAQQGTAQQVTSESAKANALFETQFMENVMASPISQTLMGIKGE DYGKWDEISEAADARELERAKRHLAELRAIDANALDSQTALSLALALQSLENEIADYKWRLHNYPVNQMYGVHSLTASIL INQHTVDNLDDAKAYISRLNAVPKRFSELKDALELRAAKGIIAPRFVFPLVINDSRNIIKGEPFEEGEDSTLWADFKRKV DALNLDATTKENLFSEAKLALNNAVKPAYDDLIVYLNTLEQKADTRDGVWKLPDGNDFYNNALKRTTTTDMDAIAIHELG LKEVARIHNEMRDIMKEVGFKGSLNDFFIFMRNDEQFYYPDTDDGKAAYINDAKALIDNMSARLDEVFAIKPKAGLIVKP VESFREKSAGKAFYDQPAPDGSRPGTYYANLYSMKAMPKYQMEALAYHEGLPGHHMQIAIAQELEGIPKFRRFGRYTAYV EGWGLYTEFFPREMGLYQDPYSNFGRLAMELWRACRLVVDTGIHAKKWTREQGIAYYKENTPNAESDAVKMVERHIVMPS QATAYKVGMNRILDLRAYAQKSLGDAFDIREFHTLLLKNGPLPLDVLETKVQEWVKDSKQQAAKL >Mature_624_residues PNTYNKKNKISLIAASLLLALGSASSFTAQAETQGTAQQGTAQQVTSESAKANALFETQFMENVMASPISQTLMGIKGED YGKWDEISEAADARELERAKRHLAELRAIDANALDSQTALSLALALQSLENEIADYKWRLHNYPVNQMYGVHSLTASILI NQHTVDNLDDAKAYISRLNAVPKRFSELKDALELRAAKGIIAPRFVFPLVINDSRNIIKGEPFEEGEDSTLWADFKRKVD ALNLDATTKENLFSEAKLALNNAVKPAYDDLIVYLNTLEQKADTRDGVWKLPDGNDFYNNALKRTTTTDMDAIAIHELGL KEVARIHNEMRDIMKEVGFKGSLNDFFIFMRNDEQFYYPDTDDGKAAYINDAKALIDNMSARLDEVFAIKPKAGLIVKPV ESFREKSAGKAFYDQPAPDGSRPGTYYANLYSMKAMPKYQMEALAYHEGLPGHHMQIAIAQELEGIPKFRRFGRYTAYVE GWGLYTEFFPREMGLYQDPYSNFGRLAMELWRACRLVVDTGIHAKKWTREQGIAYYKENTPNAESDAVKMVERHIVMPSQ ATAYKVGMNRILDLRAYAQKSLGDAFDIREFHTLLLKNGPLPLDVLETKVQEWVKDSKQQAAKL
Specific function: Unknown
COG id: COG4805
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 70448; Mature: 70316
Theoretical pI: Translated: 6.00; Mature: 6.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPNTYNKKNKISLIAASLLLALGSASSFTAQAETQGTAQQGTAQQVTSESAKANALFETQ CCCCCCCCHHHHHHHHHHHHHHCCCCCCEECHHCCCCHHCCHHHHHHHHHHHHHHHHHHH FMENVMASPISQTLMGIKGEDYGKWDEISEAADARELERAKRHLAELRAIDANALDSQTA HHHHHHHCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH LSLALALQSLENEIADYKWRLHNYPVNQMYGVHSLTASILINQHTVDNLDDAKAYISRLN HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHH AVPKRFSELKDALELRAAKGIIAPRFVFPLVINDSRNIIKGEPFEEGEDSTLWADFKRKV HHHHHHHHHHHHHHHHHHCCCCCCHHEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHH DALNLDATTKENLFSEAKLALNNAVKPAYDDLIVYLNTLEQKADTRDGVWKLPDGNDFYN HHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHH NALKRTTTTDMDAIAIHELGLKEVARIHNEMRDIMKEVGFKGSLNDFFIFMRNDEQFYYP HHHHHCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEECC DTDDGKAAYINDAKALIDNMSARLDEVFAIKPKAGLIVKPVESFREKSAGKAFYDQPAPD CCCCCCEEEECHHHHHHHHHHHHHHHHEEECCCCCEEECCHHHHHHHCCCCCCCCCCCCC GSRPGTYYANLYSMKAMPKYQMEALAYHEGLPGHHMQIAIAQELEGIPKFRRFGRYTAYV CCCCCCEEEHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEEHHHHCCCHHHHHCCCEEEEE EGWGLYTEFFPREMGLYQDPYSNFGRLAMELWRACRLVVDTGIHAKKWTREQGIAYYKEN ECCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCEEEECC TPNAESDAVKMVERHIVMPSQATAYKVGMNRILDLRAYAQKSLGDAFDIREFHTLLLKNG CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC PLPLDVLETKVQEWVKDSKQQAAKL CCCHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure PNTYNKKNKISLIAASLLLALGSASSFTAQAETQGTAQQGTAQQVTSESAKANALFETQ CCCCCCCHHHHHHHHHHHHHHCCCCCCEECHHCCCCHHCCHHHHHHHHHHHHHHHHHHH FMENVMASPISQTLMGIKGEDYGKWDEISEAADARELERAKRHLAELRAIDANALDSQTA HHHHHHHCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH LSLALALQSLENEIADYKWRLHNYPVNQMYGVHSLTASILINQHTVDNLDDAKAYISRLN HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHH AVPKRFSELKDALELRAAKGIIAPRFVFPLVINDSRNIIKGEPFEEGEDSTLWADFKRKV HHHHHHHHHHHHHHHHHHCCCCCCHHEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHH DALNLDATTKENLFSEAKLALNNAVKPAYDDLIVYLNTLEQKADTRDGVWKLPDGNDFYN HHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHH NALKRTTTTDMDAIAIHELGLKEVARIHNEMRDIMKEVGFKGSLNDFFIFMRNDEQFYYP HHHHHCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEECC DTDDGKAAYINDAKALIDNMSARLDEVFAIKPKAGLIVKPVESFREKSAGKAFYDQPAPD CCCCCCEEEECHHHHHHHHHHHHHHHHEEECCCCCEEECCHHHHHHHCCCCCCCCCCCCC GSRPGTYYANLYSMKAMPKYQMEALAYHEGLPGHHMQIAIAQELEGIPKFRRFGRYTAYV CCCCCCEEEHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEEHHHHCCCHHHHHCCCEEEEE EGWGLYTEFFPREMGLYQDPYSNFGRLAMELWRACRLVVDTGIHAKKWTREQGIAYYKEN ECCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCEEEECC TPNAESDAVKMVERHIVMPSQATAYKVGMNRILDLRAYAQKSLGDAFDIREFHTLLLKNG CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC PLPLDVLETKVQEWVKDSKQQAAKL CCCHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA