| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is glgP [H]
Identifier: 119775585
GI number: 119775585
Start: 2952717
End: 2955191
Strand: Reverse
Name: glgP [H]
Synonym: Sama_2451
Alternate gene names: 119775585
Gene position: 2955191-2952717 (Counterclockwise)
Preceding gene: 119775586
Following gene: 119775584
Centisome position: 68.63
GC content: 58.02
Gene sequence:
>2475_bases ATGGCGACCAAACGACTGAAAGCGGCCGGACCCGAAACGGATACCGGCAGACCCCAGCCCTGTGAACCCTGCGATGCACT GCCGGCCTGTCTCGAGCGGCAGCTGAGATACAACCTGTGCCGGGAAGAGTCCCGCCATCAGGATTTGTTTCATGCACTGG CCCATGGCGTTAAGGAACAGCTGCTGGACAGCTGGCGTGAAACCCGCAAACGGGATGCCGCTGGTCAGCAACGTCAGGTG GCTTATTTGTCGCTGGAGTTCCTGATGGGTCGAACCCTGGGGAATGCGCTTTTGAGTCTGGGGATAAGCGATGATGCCCG CAAGGCGTTGCTGCCCTACAGCGTGACCCTGGAGGATCTCGAGTCCGAGGAGCATGATGCCGGGCTGGGTAACGGTGGTC TTGGGCGTCTTGCGGCCTGTTTTCTCGATTCCTGCGCCAGTATGGACATTGCCGCCACCGGATATGGCATCCGCTACGAG TACGGCATGTTTGCCCAAAAAATTGTCGATGGCTATCAAATAGAAAGACCGGACCGCTGGCTCAAAGAAGGCAACCCCTG GGAGGTGCGTTTGCACGGACAGGCGGTGATGGTGCCTTTCTTTGGTCATACCCAGTCCTATGTGGACAGGGACGGCCGTC GTCATATGCAGTGGGTCGGTACCCAGGACGTGGTGGCCGTGCCCCACGATATGCCGGTGCCTGGTTATCGCAATGGCCGC ATCAATACCCTGAGGCTGTGGAAGGCCGAGGCCACCGATGATTTTGATTTGGAAGAATTCAATCAGGGTGACTATGCCGA GGCGGTGGCCCGGAAAAATCTGGCCGAACAGATCACCATGGTGCTCTATCCCAACGACGCCAGCGAAAACGGTAAGGAGC TGAGGCTGCGTCAGCAGTACTTTTTGTCATCCGCCAGCCTGCAGGACTTGCTGCGCCGCCACTGCGCCCGCTTCGGCGAC AACTTTGCCGATTTCCATCGCCACAATGTGATTCAGCTGAATGACACCCATCCCGCCATTGCCGTGCCCGAACTGATGCG CCTCCTGCTCGATGTGTATTGTCTGGAGTGGGACGAGGCCTGGCATATCACCAGCCATACCATGGCGTACACCAACCACA CCCTGCTGCCGGAAGCCCTGGAGTGCTGGAGCGTGCGCATGCTGGGGCACATGCTGCCGCGGGTGCTGGAAATTATTTAT GAAATCAACGCCCGTTACCTGGATGAAGCGGCCCACCACTGGCCCGGAGACGGCGAGATGCTGGCGCGTATGTCCATCAT TGAGGAAGGCGCCGAGCCTCGGGTACGCATGGCCTATCTGGCCATAGTGGCGAGCTTTTCGGTAAACGGGGTAGCGGCGC TTCACACCGAGCTTTTGCGCCGTGGACTCTTTAAAGACTTCCATGCGCTGTGGCCACACAAGTTCAACAACAAGACCAAT GGCGTCACCCCGAGGCGTTGGCTGATGAATGCCAACCCACGTTTGTCGGCCCTGATTGACCGGCGCCTTGGCAGCGCCTG GCGCGAAGACTTAAGTCGCCTGGAAAGCCTGAATGCCTTTACCTCAGATTCTGACTTTATCCATGCCTGGCGCGAGGTGA AGTCGGTCAACAAAGAGGCACTGGCGGCCCTGGTTGAGCGTGAGTGTCATGTGCAGTTTGACACCGCCATGATGTTCGAT GTGCAGGTGAAGCGCATCCATGAATACAAGCGCCAGCTGCTGAACATTCTGCATGTGATTCATCTCTACCAGCGTATTTT AAGCGGCGACACCCACGGCATGGTGCCCCGCTGCGTGCTGATTGGTGGCAAGGCGGCGCCCGGATACGCCATGGCCAAAC TCATTATCAAGCTGGCGGGCAATGTGGCCCACATGGTCAACAGTGACCCCCATGTGACGCCCTGGCTGAGGTTTGCCTTT TTGCCCAACTACAACGTCAGCGCCATGGAAGTGATAGCACCGGGCACCGACCTGTCCGAGCAAATTTCCACCGCAGGCAA GGAGGCTTCGGGCACAGGCAATATGAAGTTCATGATGAACGGTGCCCTCACCATAGGCACCCTGGATGGGGCCAATATTG AAATTCTTGAAGCCGTTGGGCCGGATAACTTCTTCCTCTTTGGCCTCAATGCCGACGAGGTGGCGGCCTTGAAACCCCAC TATCGCCCCGATGAGTACATTCGCCATTCGGTTGCACTGGAAGGCGTAATCGAACTTATCCGCAGCGGTCATTTCAGCTT GCAGGAGCCGGGCATCTTCGACCCCATTGTCAGTGCCATCGAAAGCCCATGGGACCAGTGGATGACCGCGGCCGACTTTG AGTCTTACCTCAGTGCCCAGCATCAGGCGGCGGCGCTTTATGCCAATAAGGACGCCTGGACCCTTTGCAGTATTCGTAAC ACCGCGGCCAGTGGCCGTTTTTCATCCGACGCCACCATAGCCCGCTACCGGGATGAGATCTGGACCGGTGCCTGA
Upstream 100 bases:
>100_bases ATAGAGGCGGGCGACACCCTGACGCTACCCGGCGTCAGTATCTGGATTTTTCACGGACACAGGGATGCCGACCCCGGCAC TCAATAACGGAGACCACACC
Downstream 100 bases:
>100_bases ATTTGACGCAGCCAAGGAGCCTCTAATGCCCAATCACAGCCCTCGCTTCATCAGTAATCTGACCCGTGAAACCTATGCCC TGATCCTCGCGGGAGGTCGT
Product: phosphorylase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 824; Mature: 823
Protein sequence:
>824_residues MATKRLKAAGPETDTGRPQPCEPCDALPACLERQLRYNLCREESRHQDLFHALAHGVKEQLLDSWRETRKRDAAGQQRQV AYLSLEFLMGRTLGNALLSLGISDDARKALLPYSVTLEDLESEEHDAGLGNGGLGRLAACFLDSCASMDIAATGYGIRYE YGMFAQKIVDGYQIERPDRWLKEGNPWEVRLHGQAVMVPFFGHTQSYVDRDGRRHMQWVGTQDVVAVPHDMPVPGYRNGR INTLRLWKAEATDDFDLEEFNQGDYAEAVARKNLAEQITMVLYPNDASENGKELRLRQQYFLSSASLQDLLRRHCARFGD NFADFHRHNVIQLNDTHPAIAVPELMRLLLDVYCLEWDEAWHITSHTMAYTNHTLLPEALECWSVRMLGHMLPRVLEIIY EINARYLDEAAHHWPGDGEMLARMSIIEEGAEPRVRMAYLAIVASFSVNGVAALHTELLRRGLFKDFHALWPHKFNNKTN GVTPRRWLMNANPRLSALIDRRLGSAWREDLSRLESLNAFTSDSDFIHAWREVKSVNKEALAALVERECHVQFDTAMMFD VQVKRIHEYKRQLLNILHVIHLYQRILSGDTHGMVPRCVLIGGKAAPGYAMAKLIIKLAGNVAHMVNSDPHVTPWLRFAF LPNYNVSAMEVIAPGTDLSEQISTAGKEASGTGNMKFMMNGALTIGTLDGANIEILEAVGPDNFFLFGLNADEVAALKPH YRPDEYIRHSVALEGVIELIRSGHFSLQEPGIFDPIVSAIESPWDQWMTAADFESYLSAQHQAAALYANKDAWTLCSIRN TAASGRFSSDATIARYRDEIWTGA
Sequences:
>Translated_824_residues MATKRLKAAGPETDTGRPQPCEPCDALPACLERQLRYNLCREESRHQDLFHALAHGVKEQLLDSWRETRKRDAAGQQRQV AYLSLEFLMGRTLGNALLSLGISDDARKALLPYSVTLEDLESEEHDAGLGNGGLGRLAACFLDSCASMDIAATGYGIRYE YGMFAQKIVDGYQIERPDRWLKEGNPWEVRLHGQAVMVPFFGHTQSYVDRDGRRHMQWVGTQDVVAVPHDMPVPGYRNGR INTLRLWKAEATDDFDLEEFNQGDYAEAVARKNLAEQITMVLYPNDASENGKELRLRQQYFLSSASLQDLLRRHCARFGD NFADFHRHNVIQLNDTHPAIAVPELMRLLLDVYCLEWDEAWHITSHTMAYTNHTLLPEALECWSVRMLGHMLPRVLEIIY EINARYLDEAAHHWPGDGEMLARMSIIEEGAEPRVRMAYLAIVASFSVNGVAALHTELLRRGLFKDFHALWPHKFNNKTN GVTPRRWLMNANPRLSALIDRRLGSAWREDLSRLESLNAFTSDSDFIHAWREVKSVNKEALAALVERECHVQFDTAMMFD VQVKRIHEYKRQLLNILHVIHLYQRILSGDTHGMVPRCVLIGGKAAPGYAMAKLIIKLAGNVAHMVNSDPHVTPWLRFAF LPNYNVSAMEVIAPGTDLSEQISTAGKEASGTGNMKFMMNGALTIGTLDGANIEILEAVGPDNFFLFGLNADEVAALKPH YRPDEYIRHSVALEGVIELIRSGHFSLQEPGIFDPIVSAIESPWDQWMTAADFESYLSAQHQAAALYANKDAWTLCSIRN TAASGRFSSDATIARYRDEIWTGA >Mature_823_residues ATKRLKAAGPETDTGRPQPCEPCDALPACLERQLRYNLCREESRHQDLFHALAHGVKEQLLDSWRETRKRDAAGQQRQVA YLSLEFLMGRTLGNALLSLGISDDARKALLPYSVTLEDLESEEHDAGLGNGGLGRLAACFLDSCASMDIAATGYGIRYEY GMFAQKIVDGYQIERPDRWLKEGNPWEVRLHGQAVMVPFFGHTQSYVDRDGRRHMQWVGTQDVVAVPHDMPVPGYRNGRI NTLRLWKAEATDDFDLEEFNQGDYAEAVARKNLAEQITMVLYPNDASENGKELRLRQQYFLSSASLQDLLRRHCARFGDN FADFHRHNVIQLNDTHPAIAVPELMRLLLDVYCLEWDEAWHITSHTMAYTNHTLLPEALECWSVRMLGHMLPRVLEIIYE INARYLDEAAHHWPGDGEMLARMSIIEEGAEPRVRMAYLAIVASFSVNGVAALHTELLRRGLFKDFHALWPHKFNNKTNG VTPRRWLMNANPRLSALIDRRLGSAWREDLSRLESLNAFTSDSDFIHAWREVKSVNKEALAALVERECHVQFDTAMMFDV QVKRIHEYKRQLLNILHVIHLYQRILSGDTHGMVPRCVLIGGKAAPGYAMAKLIIKLAGNVAHMVNSDPHVTPWLRFAFL PNYNVSAMEVIAPGTDLSEQISTAGKEASGTGNMKFMMNGALTIGTLDGANIEILEAVGPDNFFLFGLNADEVAALKPHY RPDEYIRHSVALEGVIELIRSGHFSLQEPGIFDPIVSAIESPWDQWMTAADFESYLSAQHQAAALYANKDAWTLCSIRNT AASGRFSSDATIARYRDEIWTGA
Specific function: Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties [
COG id: COG0058
COG function: function code G; Glucan phosphorylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycogen phosphorylase family [H]
Homologues:
Organism=Homo sapiens, GI5032009, Length=811, Percent_Identity=50.1849568434032, Blast_Score=761, Evalue=0.0, Organism=Homo sapiens, GI21361370, Length=801, Percent_Identity=50.6866416978777, Blast_Score=758, Evalue=0.0, Organism=Homo sapiens, GI71037379, Length=812, Percent_Identity=49.5073891625616, Blast_Score=749, Evalue=0.0, Organism=Homo sapiens, GI255653002, Length=693, Percent_Identity=51.3708513708514, Blast_Score=706, Evalue=0.0, Organism=Homo sapiens, GI257900462, Length=664, Percent_Identity=51.6566265060241, Blast_Score=672, Evalue=0.0, Organism=Escherichia coli, GI2367228, Length=807, Percent_Identity=46.7162329615861, Blast_Score=713, Evalue=0.0, Organism=Escherichia coli, GI48994936, Length=768, Percent_Identity=46.3541666666667, Blast_Score=686, Evalue=0.0, Organism=Caenorhabditis elegans, GI17564550, Length=814, Percent_Identity=49.1400491400491, Blast_Score=762, Evalue=0.0, Organism=Caenorhabditis elegans, GI32566204, Length=814, Percent_Identity=49.1400491400491, Blast_Score=761, Evalue=0.0, Organism=Saccharomyces cerevisiae, GI6325418, Length=814, Percent_Identity=46.0687960687961, Blast_Score=675, Evalue=0.0, Organism=Drosophila melanogaster, GI78706832, Length=801, Percent_Identity=49.438202247191, Blast_Score=745, Evalue=0.0, Organism=Drosophila melanogaster, GI24581010, Length=801, Percent_Identity=49.438202247191, Blast_Score=745, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011833 - InterPro: IPR000811 [H]
Pfam domain/function: PF00343 Phosphorylase [H]
EC number: =2.4.1.1 [H]
Molecular weight: Translated: 92954; Mature: 92822
Theoretical pI: Translated: 6.23; Mature: 6.23
Prosite motif: PS00102 PHOSPHORYLASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATKRLKAAGPETDTGRPQPCEPCDALPACLERQLRYNLCREESRHQDLFHALAHGVKEQ CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLDSWRETRKRDAAGQQRQVAYLSLEFLMGRTLGNALLSLGISDDARKALLPYSVTLEDL HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCEEEHHHH ESEEHDAGLGNGGLGRLAACFLDSCASMDIAATGYGIRYEYGMFAQKIVDGYQIERPDRW CCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCEEEHHHHHHHHHHCCCCCCCCHHH LKEGNPWEVRLHGQAVMVPFFGHTQSYVDRDGRRHMQWVGTQDVVAVPHDMPVPGYRNGR HHCCCCEEEEECCCEEEEEECCCCHHHHHCCCHHHHHCCCCCCEEECCCCCCCCCCCCCC INTLRLWKAEATDDFDLEEFNQGDYAEAVARKNLAEQITMVLYPNDASENGKELRLRQQY EEEEEEEECCCCCCCCHHHCCCCHHHHHHHHHHHHHHEEEEEECCCCCCCCHHHHHHHHH FLSSASLQDLLRRHCARFGDNFADFHRHNVIQLNDTHPAIAVPELMRLLLDVYCLEWDEA HHHHHHHHHHHHHHHHHHCCCHHHHHCCCEEEECCCCCCEEHHHHHHHHHHHHHHCCCCC WHITSHTMAYTNHTLLPEALECWSVRMLGHMLPRVLEIIYEINARYLDEAAHHWPGDGEM EEEECCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH LARMSIIEEGAEPRVRMAYLAIVASFSVNGVAALHTELLRRGLFKDFHALWPHKFNNKTN HHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC GVTPRRWLMNANPRLSALIDRRLGSAWREDLSRLESLNAFTSDSDFIHAWREVKSVNKEA CCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHH LAALVERECHVQFDTAMMFDVQVKRIHEYKRQLLNILHVIHLYQRILSGDTHGMVPRCVL HHHHHHHHHCEEECCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE IGGKAAPGYAMAKLIIKLAGNVAHMVNSDPHVTPWLRFAFLPNYNVSAMEVIAPGTDLSE ECCCCCCHHHHHHHHHHHHCCHHHHCCCCCCCCHHHHEEECCCCCCCEEEEECCCCCHHH QISTAGKEASGTGNMKFMMNGALTIGTLDGANIEILEAVGPDNFFLFGLNADEVAALKPH HHHHCCCCCCCCCCEEEEEECCEEEEECCCCCEEEEEECCCCCEEEEECCCCCHHHCCCC YRPDEYIRHSVALEGVIELIRSGHFSLQEPGIFDPIVSAIESPWDQWMTAADFESYLSAQ CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHH HQAAALYANKDAWTLCSIRNTAASGRFSSDATIARYRDEIWTGA HHHHEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCC >Mature Secondary Structure ATKRLKAAGPETDTGRPQPCEPCDALPACLERQLRYNLCREESRHQDLFHALAHGVKEQ CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLDSWRETRKRDAAGQQRQVAYLSLEFLMGRTLGNALLSLGISDDARKALLPYSVTLEDL HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCEEEHHHH ESEEHDAGLGNGGLGRLAACFLDSCASMDIAATGYGIRYEYGMFAQKIVDGYQIERPDRW CCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCEEEHHHHHHHHHHCCCCCCCCHHH LKEGNPWEVRLHGQAVMVPFFGHTQSYVDRDGRRHMQWVGTQDVVAVPHDMPVPGYRNGR HHCCCCEEEEECCCEEEEEECCCCHHHHHCCCHHHHHCCCCCCEEECCCCCCCCCCCCCC INTLRLWKAEATDDFDLEEFNQGDYAEAVARKNLAEQITMVLYPNDASENGKELRLRQQY EEEEEEEECCCCCCCCHHHCCCCHHHHHHHHHHHHHHEEEEEECCCCCCCCHHHHHHHHH FLSSASLQDLLRRHCARFGDNFADFHRHNVIQLNDTHPAIAVPELMRLLLDVYCLEWDEA HHHHHHHHHHHHHHHHHHCCCHHHHHCCCEEEECCCCCCEEHHHHHHHHHHHHHHCCCCC WHITSHTMAYTNHTLLPEALECWSVRMLGHMLPRVLEIIYEINARYLDEAAHHWPGDGEM EEEECCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH LARMSIIEEGAEPRVRMAYLAIVASFSVNGVAALHTELLRRGLFKDFHALWPHKFNNKTN HHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC GVTPRRWLMNANPRLSALIDRRLGSAWREDLSRLESLNAFTSDSDFIHAWREVKSVNKEA CCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHH LAALVERECHVQFDTAMMFDVQVKRIHEYKRQLLNILHVIHLYQRILSGDTHGMVPRCVL HHHHHHHHHCEEECCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE IGGKAAPGYAMAKLIIKLAGNVAHMVNSDPHVTPWLRFAFLPNYNVSAMEVIAPGTDLSE ECCCCCCHHHHHHHHHHHHCCHHHHCCCCCCCCHHHHEEECCCCCCCEEEEECCCCCHHH QISTAGKEASGTGNMKFMMNGALTIGTLDGANIEILEAVGPDNFFLFGLNADEVAALKPH HHHHCCCCCCCCCCEEEEEECCEEEEECCCCCEEEEEECCCCCEEEEECCCCCHHHCCCC YRPDEYIRHSVALEGVIELIRSGHFSLQEPGIFDPIVSAIESPWDQWMTAADFESYLSAQ CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHH HQAAALYANKDAWTLCSIRNTAASGRFSSDATIARYRDEIWTGA HHHHEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]