| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is 119775550
Identifier: 119775550
GI number: 119775550
Start: 2905885
End: 2907759
Strand: Reverse
Name: 119775550
Synonym: Sama_2416
Alternate gene names: NA
Gene position: 2907759-2905885 (Counterclockwise)
Preceding gene: 119775556
Following gene: 119775549
Centisome position: 67.53
GC content: 54.93
Gene sequence:
>1875_bases ATGAATGTCTTGTTATACTCAAGCCCTTTTATTGGATTCCATCATACCTATAAGGACAACAGAGTGGAACAAAAGTTAAC TGCCTTTTTACCCTTGTCACTGTTTATTTCGACTTGTGCATTTGCCGGTGTGGATTATCACATCGATCTTTCTTCTCCGA CCCATCATCTGGCCAAAGTCGAAGTACGTTTTCCCAAGGTGGAGGCCGGAGACTTTCCGGTGAATTTACCCGTATGGCGA ACCGGTAAATATCAGGTGTTGCCTCTGGCTGACGGCGTGCGCGCCTTTCAGGCCATAGATGCCAGTGGCAATGCTGTGCC GTGGCGACGCAGCGCCAGCGGCGAGTGGGTGTTGAGTCTGCCCGTGGCGTCGGAAGTGACAGTGTCCTATCAGCTCTATG CCGACGAGCTTGGGCTCAGAACCCGCCATATTGATGCCACCCATGCTTATCTGGATGCCAGCAGCGTGTTTATGTACAGT CCAAAGTTTCGGGATCAGGAACTCAGTGTCAGTCTCACGGTTCCGGAAGGCTGGCAAAGCTATTCGGGGATGAGCAAGGG GGACGGTGCCCACAGCTTTGTGGCGCCCAACTACGATGTGCTGGTGGACTCACCCATCGAAACCGGTGTAAGCCATCACC GTCGTTTTTCATCCGCCAAGCGTGACTATGAGCTGGTTGTGTGGGGAGAGGGGAACTATGACCTGGATAAAATGGTCACC GACTTGACCAAGCTTGGCACCCAGGCCAGCGCCATATGGGACGGTTTCCCCTTCGAGCGTTATGTTTATATGGTGCACGC CACCAGTGGAGCCCGGGGGGCCACCGAGCATCTCAACTCCACCGTCATTCAGCTGCCGCGTTTTATGTTCCGTGAGCGCA AGGACTATCTGAGATTTATCTCCACCGCCTCCCACGAGTTTATCCATACCTGGAACGTGAAAGCCTATCGCCCAGCCGGT TTGGTGCCCTATGACTATCAACAGGAAGGACTGACCTCTTTGCTGTGGATAGCCGAAGGCTCCACCAGTTACTTTCAGCA TCAGCTGCTGGCGCGGGCGGGCGTGATCACCGCCAAAGAGCTGCTGGAAGATATCGCCGGGCGTATTGACCGTCATCAGC AAACCCCCGGCCGTGAAATCCAGTCGGTGGCCGAGGCCAGTCTCGGGGAGTGGGTTGCTCAGGGCGGCGATTATGCCCAT AACCACAGCGTAAACATTTACTCTGAGGGGTATATGGCGTCGCTGGCCCTGGATATGGCGATTCTCTCTGATACCAAACT CAAGCACTCCTATCGCGACGTCCACCGGGCCTTATACCGTGATTTTGCTGTGCCCAAGGGCTACCGCGTCGACGATGTTA AAGGCATTCTGACCCAACTGACCGGCAAGGACTATGGCCCCTGGTGGCAGAGTCATATCGATTCCCCCATGGTGCTGGAT TTTGATGAGCTGTTGTCCCGCGCCGGGTTGAGACTGGTTTATGGCAAAGACGACGGCGATGGCAAAACCAAAGTCTACCC GGGCTTTAGCCTGGTATCAGGCAGTCTCAAGCTGCAAACTCTCGATAGGGGTGGCAAGGCATGGGAAGCAGGCCTGGTTG CCGGTAACGAGCTGGTTGCCATCAATGGTCTCAAGGTCACGGGTGAGGGCTTTGATAAACGTCTGGCCGATTTCAAGGCA GGCGACAGCATCACTGTGACCTACTTTGCTGACGACAGCCTCAAGCAGACCACATTGGTACTTGGCGAGCGGCCGGAGGG TAAAGCGGCGCTCAAACCGCTGGAGAAGGTGTCTGACAAGCAAAAGGCCTTCTTCAAGGCCTGGCTGGGCATCGACTGGC CGTTCGACAAAAAAGGCGAGTTCAGAAAGAGTTGA
Upstream 100 bases:
>100_bases AAAAGCCAATAAAATGAGTCGCATAAATTATCCGTTGCTCAAGTCTGCCCCTGCAAAAATCAGGAAATTGTCAGCATTTG TGACATCAGGATGAGGGGAG
Downstream 100 bases:
>100_bases TGAAAGGCCGGCGCAAGCCGGCTTTTTTATTCCCAAGGCCATCGCCGGTGTTTGCAAAAACAGGACAGTGTTGCACAGGA CACATTTGCTAAAACTTCTG
Product: peptidase M61
Products: NA
Alternate protein names: Peptidase M; Protease; Glycyl Aminopeptidase; M61 Family Peptidase; M61 Glycyl Aminopeptidase; Pdz/Dhr/Glgf; M61 Family Glycyl Aminopeptidase; Trypsin-Like Serine Protease; Aminopeptidase N Family Protein; Metallopeptidase; Glycyl Aminopeptidase Protein; PDZ Domain-Containing Protein; PDZ Domain Family Protein; Protease With C-Terminal PDZ Domain-Containing Protein; PDZ/DHR/GLGFPeptidase M; PDZ Domain Protein; Protease With C-Terminal PDZ Domain; Aminopeptidase; Signaling Protein; M61 Glycyl Aminopeptidase Protein; M61 Glycyl Aminopeptidase Family Protein
Number of amino acids: Translated: 624; Mature: 624
Protein sequence:
>624_residues MNVLLYSSPFIGFHHTYKDNRVEQKLTAFLPLSLFISTCAFAGVDYHIDLSSPTHHLAKVEVRFPKVEAGDFPVNLPVWR TGKYQVLPLADGVRAFQAIDASGNAVPWRRSASGEWVLSLPVASEVTVSYQLYADELGLRTRHIDATHAYLDASSVFMYS PKFRDQELSVSLTVPEGWQSYSGMSKGDGAHSFVAPNYDVLVDSPIETGVSHHRRFSSAKRDYELVVWGEGNYDLDKMVT DLTKLGTQASAIWDGFPFERYVYMVHATSGARGATEHLNSTVIQLPRFMFRERKDYLRFISTASHEFIHTWNVKAYRPAG LVPYDYQQEGLTSLLWIAEGSTSYFQHQLLARAGVITAKELLEDIAGRIDRHQQTPGREIQSVAEASLGEWVAQGGDYAH NHSVNIYSEGYMASLALDMAILSDTKLKHSYRDVHRALYRDFAVPKGYRVDDVKGILTQLTGKDYGPWWQSHIDSPMVLD FDELLSRAGLRLVYGKDDGDGKTKVYPGFSLVSGSLKLQTLDRGGKAWEAGLVAGNELVAINGLKVTGEGFDKRLADFKA GDSITVTYFADDSLKQTTLVLGERPEGKAALKPLEKVSDKQKAFFKAWLGIDWPFDKKGEFRKS
Sequences:
>Translated_624_residues MNVLLYSSPFIGFHHTYKDNRVEQKLTAFLPLSLFISTCAFAGVDYHIDLSSPTHHLAKVEVRFPKVEAGDFPVNLPVWR TGKYQVLPLADGVRAFQAIDASGNAVPWRRSASGEWVLSLPVASEVTVSYQLYADELGLRTRHIDATHAYLDASSVFMYS PKFRDQELSVSLTVPEGWQSYSGMSKGDGAHSFVAPNYDVLVDSPIETGVSHHRRFSSAKRDYELVVWGEGNYDLDKMVT DLTKLGTQASAIWDGFPFERYVYMVHATSGARGATEHLNSTVIQLPRFMFRERKDYLRFISTASHEFIHTWNVKAYRPAG LVPYDYQQEGLTSLLWIAEGSTSYFQHQLLARAGVITAKELLEDIAGRIDRHQQTPGREIQSVAEASLGEWVAQGGDYAH NHSVNIYSEGYMASLALDMAILSDTKLKHSYRDVHRALYRDFAVPKGYRVDDVKGILTQLTGKDYGPWWQSHIDSPMVLD FDELLSRAGLRLVYGKDDGDGKTKVYPGFSLVSGSLKLQTLDRGGKAWEAGLVAGNELVAINGLKVTGEGFDKRLADFKA GDSITVTYFADDSLKQTTLVLGERPEGKAALKPLEKVSDKQKAFFKAWLGIDWPFDKKGEFRKS >Mature_624_residues MNVLLYSSPFIGFHHTYKDNRVEQKLTAFLPLSLFISTCAFAGVDYHIDLSSPTHHLAKVEVRFPKVEAGDFPVNLPVWR TGKYQVLPLADGVRAFQAIDASGNAVPWRRSASGEWVLSLPVASEVTVSYQLYADELGLRTRHIDATHAYLDASSVFMYS PKFRDQELSVSLTVPEGWQSYSGMSKGDGAHSFVAPNYDVLVDSPIETGVSHHRRFSSAKRDYELVVWGEGNYDLDKMVT DLTKLGTQASAIWDGFPFERYVYMVHATSGARGATEHLNSTVIQLPRFMFRERKDYLRFISTASHEFIHTWNVKAYRPAG LVPYDYQQEGLTSLLWIAEGSTSYFQHQLLARAGVITAKELLEDIAGRIDRHQQTPGREIQSVAEASLGEWVAQGGDYAH NHSVNIYSEGYMASLALDMAILSDTKLKHSYRDVHRALYRDFAVPKGYRVDDVKGILTQLTGKDYGPWWQSHIDSPMVLD FDELLSRAGLRLVYGKDDGDGKTKVYPGFSLVSGSLKLQTLDRGGKAWEAGLVAGNELVAINGLKVTGEGFDKRLADFKA GDSITVTYFADDSLKQTTLVLGERPEGKAALKPLEKVSDKQKAFFKAWLGIDWPFDKKGEFRKS
Specific function: Unknown
COG id: COG3975
COG function: function code R; Predicted protease with the C-terminal PDZ domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 69757; Mature: 69757
Theoretical pI: Translated: 6.81; Mature: 6.81
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNVLLYSSPFIGFHHTYKDNRVEQKLTAFLPLSLFISTCAFAGVDYHIDLSSPTHHLAKV CEEEEECCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEE EVRFPKVEAGDFPVNLPVWRTGKYQVLPLADGVRAFQAIDASGNAVPWRRSASGEWVLSL EEECCCEECCCCCCCCCEEECCCEEEEECCCCHHHHHEECCCCCCCCCCCCCCCCEEEEE PVASEVTVSYQLYADELGLRTRHIDATHAYLDASSVFMYSPKFRDQELSVSLTVPEGWQS CCCCCEEEEEEEEEHHHCCEEEECCCHHHEECCCCEEEECCCCCCCEEEEEEECCCCHHH YSGMSKGDGAHSFVAPNYDVLVDSPIETGVSHHRRFSSAKRDYELVVWGEGNYDLDKMVT HCCCCCCCCCCCEECCCCCEEECCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHH DLTKLGTQASAIWDGFPFERYVYMVHATSGARGATEHLNSTVIQLPRFMFRERKDYLRFI HHHHHCCCHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH STASHEFIHTWNVKAYRPAGLVPYDYQQEGLTSLLWIAEGSTSYFQHQLLARAGVITAKE HHCCCCEEEEECCEEECCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCHHHHH LLEDIAGRIDRHQQTPGREIQSVAEASLGEWVAQGGDYAHNHSVNIYSEGYMASLALDMA HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHH ILSDTKLKHSYRDVHRALYRDFAVPKGYRVDDVKGILTQLTGKDYGPWWQSHIDSPMVLD HHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHCCCCEEEC FDELLSRAGLRLVYGKDDGDGKTKVYPGFSLVSGSLKLQTLDRGGKAWEAGLVAGNELVA HHHHHHHCCEEEEEECCCCCCCEEEECCHHEEECCEEEEEECCCCCEEECCEEECCEEEE INGLKVTGEGFDKRLADFKAGDSITVTYFADDSLKQTTLVLGERPEGKAALKPLEKVSDK EECEEEECCCHHHHHHHCCCCCCEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHH QKAFFKAWLGIDWPFDKKGEFRKS HHHHHHHHHCCCCCCCCCCCCCCC >Mature Secondary Structure MNVLLYSSPFIGFHHTYKDNRVEQKLTAFLPLSLFISTCAFAGVDYHIDLSSPTHHLAKV CEEEEECCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEE EVRFPKVEAGDFPVNLPVWRTGKYQVLPLADGVRAFQAIDASGNAVPWRRSASGEWVLSL EEECCCEECCCCCCCCCEEECCCEEEEECCCCHHHHHEECCCCCCCCCCCCCCCCEEEEE PVASEVTVSYQLYADELGLRTRHIDATHAYLDASSVFMYSPKFRDQELSVSLTVPEGWQS CCCCCEEEEEEEEEHHHCCEEEECCCHHHEECCCCEEEECCCCCCCEEEEEEECCCCHHH YSGMSKGDGAHSFVAPNYDVLVDSPIETGVSHHRRFSSAKRDYELVVWGEGNYDLDKMVT HCCCCCCCCCCCEECCCCCEEECCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHH DLTKLGTQASAIWDGFPFERYVYMVHATSGARGATEHLNSTVIQLPRFMFRERKDYLRFI HHHHHCCCHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH STASHEFIHTWNVKAYRPAGLVPYDYQQEGLTSLLWIAEGSTSYFQHQLLARAGVITAKE HHCCCCEEEEECCEEECCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCHHHHH LLEDIAGRIDRHQQTPGREIQSVAEASLGEWVAQGGDYAHNHSVNIYSEGYMASLALDMA HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHH ILSDTKLKHSYRDVHRALYRDFAVPKGYRVDDVKGILTQLTGKDYGPWWQSHIDSPMVLD HHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHCCCCEEEC FDELLSRAGLRLVYGKDDGDGKTKVYPGFSLVSGSLKLQTLDRGGKAWEAGLVAGNELVA HHHHHHHCCEEEEEECCCCCCCEEEECCHHEEECCEEEEEECCCCCEEECCEEECCEEEE INGLKVTGEGFDKRLADFKAGDSITVTYFADDSLKQTTLVLGERPEGKAALKPLEKVSDK EECEEEECCCHHHHHHHCCCCCCEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHH QKAFFKAWLGIDWPFDKKGEFRKS HHHHHHHHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA