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The map label for this gene is ycfQ [H]

Identifier: 119775542

GI number: 119775542

Start: 2895344

End: 2895922

Strand: Direct

Name: ycfQ [H]

Synonym: Sama_2408

Alternate gene names: 119775542

Gene position: 2895344-2895922 (Clockwise)

Preceding gene: 119775540

Following gene: 119775544

Centisome position: 67.24

GC content: 55.27

Gene sequence:

>579_bases
ATGCGCAGCGCCGAATTTGATCGCGAGCAAGTGCTCCGCCAAGCCATGCAAGCCTTTATGCAAAAGGGCTACAGCAAAAC
CAGCATGCAGGATTTAACCCGCGCCACCGGGTTGCATCCGGGATCAATTTACTGTGCGTTCGAAAATAAACGAGGCTTGT
TGTTGGCGGCTATTGGTCAGTATCAGGCCGATCGTACCGCACAGTTTCAGGCGTTCTTCCCCGAGTCAGGTTCTGTTGTT
GCAGGGCTTGACGCCTATCTGAATAATCTGGTGGCCGAATGCCAGTGCGGCGCCGACAAGGGCTGTTTGCTGACCAAGTC
CTTGAATGAACTGGCAGAGCAAGACAGTGAGATAAGTGCGCTCTTGTGCAAGAGCCTGGGAAGTTGCCAGCAAGGTTTGG
CGGCCCAATTTCAGCGCGCCATGGACAGTGGTGAAATTCCTGCGACCCAAACGGCAATGGAGCGGGCTGAGTACCTGGTG
ATGGGGATCTACGGCCTGCGCACGTTGGCGCAAACACACCCTTCTGCCCAAACCCTTAAACGACTGGCGGTAAAGTTACG
GATGGACAGCTGCGCCTGA

Upstream 100 bases:

>100_bases
TTCAAAATAATCATTCTTGAACATACATTCAAGAACTTTTTTGAACATACATTCAAAAAAGTCTGTTACCCTATTCCTAT
CCCAACCACAGGAACCCAGA

Downstream 100 bases:

>100_bases
GAATAGTGCGCGCGATTTGGCAGAGACAAAAGGGCTGACTGTCTCCCCCCTTCAAACCGCTGTATCACAGACACAAAAAA
TCCCGGACATACCGGGATTT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MRSAEFDREQVLRQAMQAFMQKGYSKTSMQDLTRATGLHPGSIYCAFENKRGLLLAAIGQYQADRTAQFQAFFPESGSVV
AGLDAYLNNLVAECQCGADKGCLLTKSLNELAEQDSEISALLCKSLGSCQQGLAAQFQRAMDSGEIPATQTAMERAEYLV
MGIYGLRTLAQTHPSAQTLKRLAVKLRMDSCA

Sequences:

>Translated_192_residues
MRSAEFDREQVLRQAMQAFMQKGYSKTSMQDLTRATGLHPGSIYCAFENKRGLLLAAIGQYQADRTAQFQAFFPESGSVV
AGLDAYLNNLVAECQCGADKGCLLTKSLNELAEQDSEISALLCKSLGSCQQGLAAQFQRAMDSGEIPATQTAMERAEYLV
MGIYGLRTLAQTHPSAQTLKRLAVKLRMDSCA
>Mature_192_residues
MRSAEFDREQVLRQAMQAFMQKGYSKTSMQDLTRATGLHPGSIYCAFENKRGLLLAAIGQYQADRTAQFQAFFPESGSVV
AGLDAYLNNLVAECQCGADKGCLLTKSLNELAEQDSEISALLCKSLGSCQQGLAAQFQRAMDSGEIPATQTAMERAEYLV
MGIYGLRTLAQTHPSAQTLKRLAVKLRMDSCA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081833, Length=187, Percent_Identity=33.1550802139037, Blast_Score=75, Evalue=3e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 20949; Mature: 20949

Theoretical pI: Translated: 7.18; Mature: 7.18

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
7.8 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
7.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSAEFDREQVLRQAMQAFMQKGYSKTSMQDLTRATGLHPGSIYCAFENKRGLLLAAIGQ
CCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCEEEEECCH
YQADRTAQFQAFFPESGSVVAGLDAYLNNLVAECQCGADKGCLLTKSLNELAEQDSEISA
HCCCCCCHHEEECCCCCCEEEHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHCCHHHHH
LLCKSLGSCQQGLAAQFQRAMDSGEIPATQTAMERAEYLVMGIYGLRTLAQTHPSAQTLK
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
RLAVKLRMDSCA
HHHHHHHHHCCC
>Mature Secondary Structure
MRSAEFDREQVLRQAMQAFMQKGYSKTSMQDLTRATGLHPGSIYCAFENKRGLLLAAIGQ
CCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCEEEEECCH
YQADRTAQFQAFFPESGSVVAGLDAYLNNLVAECQCGADKGCLLTKSLNELAEQDSEISA
HCCCCCCHHEEECCCCCCEEEHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHCCHHHHH
LLCKSLGSCQQGLAAQFQRAMDSGEIPATQTAMERAEYLVMGIYGLRTLAQTHPSAQTLK
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
RLAVKLRMDSCA
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]