| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is ycbZ [H]
Identifier: 119775540
GI number: 119775540
Start: 2891733
End: 2894108
Strand: Direct
Name: ycbZ [H]
Synonym: Sama_2406
Alternate gene names: 119775540
Gene position: 2891733-2894108 (Clockwise)
Preceding gene: 119775537
Following gene: 119775542
Centisome position: 67.15
GC content: 54.67
Gene sequence:
>2376_bases ATGGCCATCACAACTCTTGCCACCGACAAGCTGTACCGGGTATCGACCCTGGCGGGACTGGCACCGGACTGCTTTTCCAC GGCCACCTTGCCGCCACTGGATGACATTATTGGCCAAGAGCGTGCCCAGAGTGCGGTCGAGTTCGCCATGTCTATCCATG AGAAGGGCTACAACATCTACGCCATCGGCCAAAACGGTCTGGGCAAGCGCACCATGATGCTGAGGTACCTTAAACGTCAT CATTTTGATGCCAATCAGCGCTTTGACTGGTGTTACGTAGCCAACTTCGATGACAACCGGGTGCCCCGGGTATTGCGTCT GCCTGCCGGTAAGGGCAACGGCTTTAAAAAAGACATCGAGAAGCTGTCACTTCGGCTGGTAAAGGCATTGCCGCTCGCCT TCGACAACGAGATGTATTATTCCCGCGCCGACAAGCTGAAAACAGAGCTGTCGCGGCAGCAGGAAGCGGCGCTGACGGCA CTCACCGAAGAGGCGAAAAACAAGAGCATCAGCCTGTCGCTGTCGGTACAGGGCGATTACCAACTGATGGCCATGAACGG TGAAGAGCCCCACACCGAAGAAAGCTACAGCGCCCTGACGGACGAAGAACGTGAAGTCTTTGAAAACAGTATAAAAGGTC TGGAAAAGCGCCTCAGGGGCATCATACGTCAGCTCACCGAGTGGGAAGAAGAGTTCTCGCAAAAACAGCAGGAGCACGAC GAGCAGGTCGCCAAGGAAGTGCTGGCTCACTTCTTTAAACCCCTGAAGGCCAAGTATCGCGAACTGGATGATATCAAAGC CTTTTTGGGTGAGATGCAAAGAGATATCCTCGACAATCTGGATATCTTTCTGGAAGAAAGTGAAGAGCAGCTGGGGCTGG CTTACGCGGCGCTGGATAAGAAAATGCCCCGCCGCTACCAAATCAATGTGTTGGTGTGCCAGGACGAACATAAGTTTCCT GTGGTGGTGGAAGAAAGCCCCAACTACCACAGCCTGTTTGGTTACATCGAAAATGCCACTTTCAAGGGTACTGTATTTAC CGACTTTTCGCTGATCCGTCCCGGCTCACTGCACAAGGCAAACGGCGGCGTACTGCTGATGGATGCCATCAAAGTGCTGG AACGACCTTACGTATGGGATGGCCTGAAAAAAGCGCTGCGTTCCCGCAGTCTGGATTTGAACAGCCTGGAGCGGGAAGTC ACCCTGTCGGGCACCATATCGCTGGCGCCCGAACCCATTCCGCTGGATGTGAAGATCATTCTTTTTGGCGACTACCAGAC CTATCAACTGCTTCAGCAATACGACCCTGACTTCAATGAGCTGTTCAGGGTAACGGCCGACTTTGAGGACGTGATGCCAA GGCATGATGAGTCCGAAGCCCTCTATGCACGCTTTATCTCATCCATAGTGCACGATAACAACATGCTGCACTGCAATCGC TCGGCACTGGCCCGAATTATCGAGTATTCCAGCCGCCAGGCAGATGACCAGACCCGCCTTTCACTGCATTCGGCCAACAT CGCCAACCTGCTGAGGGAAACCAACTACTGCGCCAACAATGTCGGCGCCAGCGAGATAGGTCGCGAGCATGTGGAGATGG CACTGAGAAATCAGGAACTCCGGGTGTGCCGTCTGAAAGACATGGTGATGCAGCAGTTTCACAGCGGCCAGACGCTCTTC AGTGCTGAGGGCGCCGTTACCGGCCAGGTGAATGCCCTGTCGGTGATTTCCACAACGGATCATGAGTTCGGCGCACCAAA CCGTATCACCGCCACTACCGCCTACGGGAAAGGGGAAGTGCTGGATATTGAGCACAAGGTGCGACTTGGCGGCCGTATCC ACAGCAAGGGCGTATGGATCCTCACCGCCTATCTGTCGTCTCTGCTGGGTAAGCAAAGGCCTATTCCACTCACCACCTTC CTGACATTTGAGCAATCCTACAGCGGTGTGGATGGCGACAGCGCGTCCATGGCGGAATGCTGCGCCATCGTATCGGCCAT CAGCGGTGTGCCAATCCGTCAGGATCTGGCCATCACAGGTTCCATGAACCAGTTTGGTGAGTCCCAACCCATCGGCGGTG TGAACGAGAAAATAGAAGGCTTTTATGATGTTTGTGGCATCAAGGGCCGTACCGGCACCCAGGGCGTGATAATTCCATCG AGTAACGTGAAAAACCTGATGCTGAGAAGCGATATAGTCGATGCGGCGGGTCGCGGTGAGTTTCACATCTATGCCGTGGA CCATGTGACCGAAGCCATGGCGCTGCTGACCGGGCTTGAAGTGGGTAACGTGGATGATGCCAGCTTCGATACCCTGCTCG GACGGGCTGTGTCGCGGCTCACTGTGCTGGGCAAACATAAACTCGACAACGATTGA
Upstream 100 bases:
>100_bases GCCTGAAATTTAGACAGTCGTTTTGCGGGGGTTTGCCTTAGTCTCCCGGCTATCTTATTGTCGGTTATAGAAATATTAAA TTGGTACTCAAAGGGACCCT
Downstream 100 bases:
>100_bases TGCGCCCCTGACAGAAAAAAGCCCCGCTGCTGCGGGGCTTTTTTATTGGTATCACCAAGCGGATCAGTAAAGCACTGGCA GCAGCTCATCACTGTAGGGC
Product: ATP-dependent protease
Products: NA
Alternate protein names: ATP-dependent protease La homolog [H]
Number of amino acids: Translated: 791; Mature: 790
Protein sequence:
>791_residues MAITTLATDKLYRVSTLAGLAPDCFSTATLPPLDDIIGQERAQSAVEFAMSIHEKGYNIYAIGQNGLGKRTMMLRYLKRH HFDANQRFDWCYVANFDDNRVPRVLRLPAGKGNGFKKDIEKLSLRLVKALPLAFDNEMYYSRADKLKTELSRQQEAALTA LTEEAKNKSISLSLSVQGDYQLMAMNGEEPHTEESYSALTDEEREVFENSIKGLEKRLRGIIRQLTEWEEEFSQKQQEHD EQVAKEVLAHFFKPLKAKYRELDDIKAFLGEMQRDILDNLDIFLEESEEQLGLAYAALDKKMPRRYQINVLVCQDEHKFP VVVEESPNYHSLFGYIENATFKGTVFTDFSLIRPGSLHKANGGVLLMDAIKVLERPYVWDGLKKALRSRSLDLNSLEREV TLSGTISLAPEPIPLDVKIILFGDYQTYQLLQQYDPDFNELFRVTADFEDVMPRHDESEALYARFISSIVHDNNMLHCNR SALARIIEYSSRQADDQTRLSLHSANIANLLRETNYCANNVGASEIGREHVEMALRNQELRVCRLKDMVMQQFHSGQTLF SAEGAVTGQVNALSVISTTDHEFGAPNRITATTAYGKGEVLDIEHKVRLGGRIHSKGVWILTAYLSSLLGKQRPIPLTTF LTFEQSYSGVDGDSASMAECCAIVSAISGVPIRQDLAITGSMNQFGESQPIGGVNEKIEGFYDVCGIKGRTGTQGVIIPS SNVKNLMLRSDIVDAAGRGEFHIYAVDHVTEAMALLTGLEVGNVDDASFDTLLGRAVSRLTVLGKHKLDND
Sequences:
>Translated_791_residues MAITTLATDKLYRVSTLAGLAPDCFSTATLPPLDDIIGQERAQSAVEFAMSIHEKGYNIYAIGQNGLGKRTMMLRYLKRH HFDANQRFDWCYVANFDDNRVPRVLRLPAGKGNGFKKDIEKLSLRLVKALPLAFDNEMYYSRADKLKTELSRQQEAALTA LTEEAKNKSISLSLSVQGDYQLMAMNGEEPHTEESYSALTDEEREVFENSIKGLEKRLRGIIRQLTEWEEEFSQKQQEHD EQVAKEVLAHFFKPLKAKYRELDDIKAFLGEMQRDILDNLDIFLEESEEQLGLAYAALDKKMPRRYQINVLVCQDEHKFP VVVEESPNYHSLFGYIENATFKGTVFTDFSLIRPGSLHKANGGVLLMDAIKVLERPYVWDGLKKALRSRSLDLNSLEREV TLSGTISLAPEPIPLDVKIILFGDYQTYQLLQQYDPDFNELFRVTADFEDVMPRHDESEALYARFISSIVHDNNMLHCNR SALARIIEYSSRQADDQTRLSLHSANIANLLRETNYCANNVGASEIGREHVEMALRNQELRVCRLKDMVMQQFHSGQTLF SAEGAVTGQVNALSVISTTDHEFGAPNRITATTAYGKGEVLDIEHKVRLGGRIHSKGVWILTAYLSSLLGKQRPIPLTTF LTFEQSYSGVDGDSASMAECCAIVSAISGVPIRQDLAITGSMNQFGESQPIGGVNEKIEGFYDVCGIKGRTGTQGVIIPS SNVKNLMLRSDIVDAAGRGEFHIYAVDHVTEAMALLTGLEVGNVDDASFDTLLGRAVSRLTVLGKHKLDND >Mature_790_residues AITTLATDKLYRVSTLAGLAPDCFSTATLPPLDDIIGQERAQSAVEFAMSIHEKGYNIYAIGQNGLGKRTMMLRYLKRHH FDANQRFDWCYVANFDDNRVPRVLRLPAGKGNGFKKDIEKLSLRLVKALPLAFDNEMYYSRADKLKTELSRQQEAALTAL TEEAKNKSISLSLSVQGDYQLMAMNGEEPHTEESYSALTDEEREVFENSIKGLEKRLRGIIRQLTEWEEEFSQKQQEHDE QVAKEVLAHFFKPLKAKYRELDDIKAFLGEMQRDILDNLDIFLEESEEQLGLAYAALDKKMPRRYQINVLVCQDEHKFPV VVEESPNYHSLFGYIENATFKGTVFTDFSLIRPGSLHKANGGVLLMDAIKVLERPYVWDGLKKALRSRSLDLNSLEREVT LSGTISLAPEPIPLDVKIILFGDYQTYQLLQQYDPDFNELFRVTADFEDVMPRHDESEALYARFISSIVHDNNMLHCNRS ALARIIEYSSRQADDQTRLSLHSANIANLLRETNYCANNVGASEIGREHVEMALRNQELRVCRLKDMVMQQFHSGQTLFS AEGAVTGQVNALSVISTTDHEFGAPNRITATTAYGKGEVLDIEHKVRLGGRIHSKGVWILTAYLSSLLGKQRPIPLTTFL TFEQSYSGVDGDSASMAECCAIVSAISGVPIRQDLAITGSMNQFGESQPIGGVNEKIEGFYDVCGIKGRTGTQGVIIPSS NVKNLMLRSDIVDAAGRGEFHIYAVDHVTEAMALLTGLEVGNVDDASFDTLLGRAVSRLTVLGKHKLDND
Specific function: Unknown
COG id: COG1067
COG function: function code O; Predicted ATP-dependent protease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S16 family [H]
Homologues:
Organism=Escherichia coli, GI1787188, Length=446, Percent_Identity=37.4439461883408, Blast_Score=286, Evalue=4e-78,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008269 - InterPro: IPR001984 - InterPro: IPR020568 [H]
Pfam domain/function: PF05362 Lon_C [H]
EC number: 3.4.21.- [C]
Molecular weight: Translated: 88626; Mature: 88494
Theoretical pI: Translated: 5.39; Mature: 5.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAITTLATDKLYRVSTLAGLAPDCFSTATLPPLDDIIGQERAQSAVEFAMSIHEKGYNIY CEEEEECCCHHHHHHHHHCCCCHHHCCCCCCCHHHHHCHHHHHHHHHHHHHHHHCCCEEE AIGQNGLGKRTMMLRYLKRHHFDANQRFDWCYVANFDDNRVPRVLRLPAGKGNGFKKDIE EECCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCHHHHHH KLSLRLVKALPLAFDNEMYYSRADKLKTELSRQQEAALTALTEEAKNKSISLSLSVQGDY HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCE QLMAMNGEEPHTEESYSALTDEEREVFENSIKGLEKRLRGIIRQLTEWEEEFSQKQQEHD EEEEECCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EQVAKEVLAHFFKPLKAKYRELDDIKAFLGEMQRDILDNLDIFLEESEEQLGLAYAALDK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCHHHHHHHHHHHHH KMPRRYQINVLVCQDEHKFPVVVEESPNYHSLFGYIENATFKGTVFTDFSLIRPGSLHKA CCCCEEEEEEEEECCCCCCCEEEECCCCHHHHHHHHHCCEEEEEEEECEEEECCCCCEEC NGGVLLMDAIKVLERPYVWDGLKKALRSRSLDLNSLEREVTLSGTISLAPEPIPLDVKII CCCEEHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHCCEEEEEEEEEECCCCCCCEEEEE LFGDYQTYQLLQQYDPDFNELFRVTADFEDVMPRHDESEALYARFISSIVHDNNMLHCNR EECCCHHHHHHHHHCCCHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEECH SALARIIEYSSRQADDQTRLSLHSANIANLLRETNYCANNVGASEIGREHVEMALRNQEL HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCH RVCRLKDMVMQQFHSGQTLFSAEGAVTGQVNALSVISTTDHEFGAPNRITATTAYGKGEV HHHHHHHHHHHHHCCCCEEEECCCCEECCCCEEEEEEECCCCCCCCCCEEEEEECCCCCE LDIEHKVRLGGRIHSKGVWILTAYLSSLLGKQRPIPLTTFLTFEQSYSGVDGDSASMAEC EEEHHHHEECCEEECCCHHHHHHHHHHHHCCCCCCCEEEEEEEHHHCCCCCCCCHHHHHH CAIVSAISGVPIRQDLAITGSMNQFGESQPIGGVNEKIEGFYDVCGIKGRTGTQGVIIPS HHHHHHHCCCCCCCCEEEECCHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEECC SNVKNLMLRSDIVDAAGRGEFHIYAVDHVTEAMALLTGLEVGNVDDASFDTLLGRAVSRL CCCHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH TVLGKHKLDND HHHHCCCCCCC >Mature Secondary Structure AITTLATDKLYRVSTLAGLAPDCFSTATLPPLDDIIGQERAQSAVEFAMSIHEKGYNIY EEEEECCCHHHHHHHHHCCCCHHHCCCCCCCHHHHHCHHHHHHHHHHHHHHHHCCCEEE AIGQNGLGKRTMMLRYLKRHHFDANQRFDWCYVANFDDNRVPRVLRLPAGKGNGFKKDIE EECCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCHHHHHH KLSLRLVKALPLAFDNEMYYSRADKLKTELSRQQEAALTALTEEAKNKSISLSLSVQGDY HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCE QLMAMNGEEPHTEESYSALTDEEREVFENSIKGLEKRLRGIIRQLTEWEEEFSQKQQEHD EEEEECCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EQVAKEVLAHFFKPLKAKYRELDDIKAFLGEMQRDILDNLDIFLEESEEQLGLAYAALDK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCHHHHHHHHHHHHH KMPRRYQINVLVCQDEHKFPVVVEESPNYHSLFGYIENATFKGTVFTDFSLIRPGSLHKA CCCCEEEEEEEEECCCCCCCEEEECCCCHHHHHHHHHCCEEEEEEEECEEEECCCCCEEC NGGVLLMDAIKVLERPYVWDGLKKALRSRSLDLNSLEREVTLSGTISLAPEPIPLDVKII CCCEEHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHCCEEEEEEEEEECCCCCCCEEEEE LFGDYQTYQLLQQYDPDFNELFRVTADFEDVMPRHDESEALYARFISSIVHDNNMLHCNR EECCCHHHHHHHHHCCCHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEECH SALARIIEYSSRQADDQTRLSLHSANIANLLRETNYCANNVGASEIGREHVEMALRNQEL HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCH RVCRLKDMVMQQFHSGQTLFSAEGAVTGQVNALSVISTTDHEFGAPNRITATTAYGKGEV HHHHHHHHHHHHHCCCCEEEECCCCEECCCCEEEEEEECCCCCCCCCCEEEEEECCCCCE LDIEHKVRLGGRIHSKGVWILTAYLSSLLGKQRPIPLTTFLTFEQSYSGVDGDSASMAEC EEEHHHHEECCEEECCCHHHHHHHHHHHHCCCCCCCEEEEEEEHHHCCCCCCCCHHHHHH CAIVSAISGVPIRQDLAITGSMNQFGESQPIGGVNEKIEGFYDVCGIKGRTGTQGVIIPS HHHHHHHCCCCCCCCEEEECCHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEECC SNVKNLMLRSDIVDAAGRGEFHIYAVDHVTEAMALLTGLEVGNVDDASFDTLLGRAVSRL CCCHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH TVLGKHKLDND HHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503 [H]